mRNA_C-tenellus_contig7319.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7319.1.1
Unique NamemRNA_C-tenellus_contig7319.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7319.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7319contigC-tenellus_contig7319:27..218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FMS8
Model size192
Max annot lvl2759|Eukaryota
KEGG koko:K17579
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.32e-10
EggNOG OGs2CZ6V@1|root,2S8SX@2759|Eukaryota
Cds size192
BRITEko00000,ko01009,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790028.7535136-CDS-C-tenellus_contig7319:26..2181680790028.7535136-CDS-C-tenellus_contig7319:26..218Choristocarpus tenellus KU2346CDSC-tenellus_contig7319 27..218 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7319.1.1prot_C-tenellus_contig7319.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7319 27..218 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7319.1.1

>prot_C-tenellus_contig7319.1.1 ID=prot_C-tenellus_contig7319.1.1|Name=mRNA_C-tenellus_contig7319.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=64bp
SIARSGDLLTSLDGKSVHRRHREMLRKLDAHRKADARKKPSALIAKQKTR
QHAPMADPGSVLA*
back to top

mRNA from alignment at C-tenellus_contig7319:27..218-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7319.1.1 ID=mRNA_C-tenellus_contig7319.1.1|Name=mRNA_C-tenellus_contig7319.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=192bp|location=Sequence derived from alignment at C-tenellus_contig7319:27..218- (Choristocarpus tenellus KU2346)
TCGATTGCAAGGTCTGGGGATCTGTTGACCAGCCTAGATGGCAAATCCGT
CCACAGGCGCCACAGGGAGATGCTTCGCAAGCTGGATGCACACAGGAAAG
CTGACGCAAGGAAAAAGCCGTCCGCTCTCATTGCAAAGCAAAAAACGAGA
CAGCACGCTCCCATGGCTGATCCCGGGTCTGTTCTTGCTTGA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig7319:27..218-

>mRNA_C-tenellus_contig7319.1.1 ID=mRNA_C-tenellus_contig7319.1.1|Name=mRNA_C-tenellus_contig7319.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=192bp|location=Sequence derived from alignment at C-tenellus_contig7319:27..218- (Choristocarpus tenellus KU2346)
TCGATTGCAAGGTCTGGGGATCTGTTGACCAGCCTAGATGGCAAATCCGT
CCACAGGCGCCACAGGGAGATGCTTCGCAAGCTGGATGCACACAGGAAAG
CTGACGCAAGGAAAAAGCCGTCCGCTCTCATTGCAAAGCAAAAAACGAGA
CAGCACGCTCCCATGGCTGATCCCGGGTCTGTTCTTGCTTGA
back to top