mRNA_C-tenellus_contig7144.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7144.3.1
Unique NamemRNA_C-tenellus_contig7144.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7144.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7144contigC-tenellus_contig7144:3573..6407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1581
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_005420.1
Cds size825
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7144.3.1prot_C-tenellus_contig7144.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7144 3622..5700 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790016.070886-UTR-C-tenellus_contig7144:3572..36211680790016.070886-UTR-C-tenellus_contig7144:3572..3621Choristocarpus tenellus KU2346UTRC-tenellus_contig7144 3573..3621 +
1680790016.13661-UTR-C-tenellus_contig7144:5700..64071680790016.13661-UTR-C-tenellus_contig7144:5700..6407Choristocarpus tenellus KU2346UTRC-tenellus_contig7144 5701..6407 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790016.0831308-CDS-C-tenellus_contig7144:3621..39291680790016.0831308-CDS-C-tenellus_contig7144:3621..3929Choristocarpus tenellus KU2346CDSC-tenellus_contig7144 3622..3929 +
1680790016.099408-CDS-C-tenellus_contig7144:4058..43021680790016.099408-CDS-C-tenellus_contig7144:4058..4302Choristocarpus tenellus KU2346CDSC-tenellus_contig7144 4059..4302 +
1680790016.113159-CDS-C-tenellus_contig7144:4655..48091680790016.113159-CDS-C-tenellus_contig7144:4655..4809Choristocarpus tenellus KU2346CDSC-tenellus_contig7144 4656..4809 +
1680790016.124533-CDS-C-tenellus_contig7144:5581..57001680790016.124533-CDS-C-tenellus_contig7144:5581..5700Choristocarpus tenellus KU2346CDSC-tenellus_contig7144 5582..5700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7144.3.1

>prot_C-tenellus_contig7144.3.1 ID=prot_C-tenellus_contig7144.3.1|Name=mRNA_C-tenellus_contig7144.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=275bp
MDLHAFLRTQGWLHQIPTEKWESRYAILSNSCCCFTTQEEVPKTTAFKPR
LCFNPPESTLSRKRKRGRGSRSPSGMEDVLVTDLEFDIAIVTTEQAIHQR
ANSSPAERMSALYFRFEGTTYFVEHTLMDGIMYPQGAGAASDGKGDQQGA
ASYAAGRKDRESTNSVETIPFAGFIFPGVVLKFWTPKIQGKEEAVQTLQD
VIKRMMNRLTPGDCAHPLSVPGASACEDLTNETLQGLSEAADGFRARLTS
WDKFVLGTHRFLEGASGRVPIMAR*
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mRNA from alignment at C-tenellus_contig7144:3573..6407+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7144.3.1 ID=mRNA_C-tenellus_contig7144.3.1|Name=mRNA_C-tenellus_contig7144.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2835bp|location=Sequence derived from alignment at C-tenellus_contig7144:3573..6407+ (Choristocarpus tenellus KU2346)
GGATGGATGATCAACAAATGCATGCACCAAAAAACCCTTTGGTAAAACCA
TGGATCTCCATGCCTTTCTCAGGACACAGGGATGGCTCCACCAAATCCCT
ACCGAGAAGTGGGAAAGTAGATATGCTATACTCTCCAACTCGTGTTGTTG
CTTCACCACGCAAGAGGAGGTGCCGAAAACGACGGCATTCAAACCTCGAC
TTTGTTTCAACCCACCCGAATCAACCCTGTCGCGCAAGCGAAAGAGAGGC
AGAGGTTCTAGATCCCCTTCAGGAATGGAAGATGTTCTTGTAACCGACCT
CGAATTCGATATCGCGATTGTTACCACCGAACAAGCTATTCATCAACGCG
CCAACAGGTACATGATATGTGTATTTCACTTCCAAGGCATGGTTGAGAGG
AGTGCATCCACTAGCAGACTTTAGGTTTCGACCTGAATAAATCTCCTTAC
TAGTGTTCCCCCGCTCTAACCTCTTGTGCCCTGCAGTTCACCAGCCGAAA
GGATGTCGGCCCTATACTTTCGTTTCGAAGGTACTACGTACTTCGTTGAG
CACACTCTCATGGACGGGATCATGTACCCTCAAGGTGCTGGAGCTGCATC
CGATGGCAAAGGGGACCAACAGGGCGCAGCCAGCTATGCAGCCGGAAGAA
AAGACAGAGAATCAACCAATTCTGTGGAAACTATACCCTTTGCTGGTTTC
ATTTTCCCTGGTGTGGTCCTCAAGTTTTGGGTGAGTGCCCTTACCAGGCC
ATGTTTTTATGTTGCAAGGTCAAGTAGCTGGAGTGGTGATGAGGCAAACC
TACGAGGTGCTGATGAAACATTGGGTAAGATCAGGTTCCAGGAGTTATAT
GTAACTATAACCACGTATCGATCCAGTAACCATATAAACGTAGAAGCTAG
AGCGATAGGAATGCCATCCCTCCACGCAATATCATTTTCCATTTAGACCT
ACCTGCACCCCAACCGAACGACTATGTTAGCTGTTAAAAATCTGCGAGTA
GAAGGAGGAAGAAATGTGTCCGTATTTATGCGGTCCCGAAGCAAGTGCTG
GTCTCGGTTGCAATATTTTCCCCCTGATTCCAGACACCGAAGATCCAAGG
AAAGGAGGAGGCAGTGCAAACCCTACAGGATGTGATCAAGAGAATGATGA
ACCGCCTCACCCCAGGAGACTGCGCACACCCACTCTCCGTGCCTGGGGCA
TCAGCTTGCGAAGATCTGACGAATGAGACTTTGCAAGGTGGGTGTAAGAA
TTTTATTGTCGAGTTCTGCCTACGACTGCCATGTCCGGGTAGTGTATAAA
TTATAAGTTGCACAAGAGTTGGGTCGCCAGTTTTGTTGTTGACTCTTTGG
GCAGTTTTTTCAACCAGGTTCAATTGGGAAAGGGGTGCAGCTTAAAGGAC
ACTGCCCTTGGTCTCTACTCCCAGCACTACTGCACTGGAGGAGGGGGGTA
GGAAGTAGGTCGTCTTCAGCGTCTGATTGAATCCTCTCCGCTCATAATTG
AGTTGCTTCAGCAAAGAGACCATGGTATTACGAATTATGTAGAGTCCAGA
AGCCCAGCAGGATGGTCATGTCAGACTGCTGTGCCCAGTAGTCAGTCACA
GTTTGAGGTCTGGAAGGTCCTACCTGGCCACAACACATTTATGTGCATGT
TGCCCACTCCTTCCTAACACACCACCCAGAACCAACATGTTTTGCACTAA
ACGATCTTGTTCTATTAGTACTACTGCAAAGTCCCTCTCCTTCACTCGAT
TCTAAAGTTCCTACCAAGGAAGTAACGACCACTCAGTGTACCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCACCCCGCGCACACG
AACGAGGCAGTGAAGGAACGNNNNNNNNNNTATTTTGACTACTTTTTCAT
CCCAAATCACACACAAAAAAAAAAAAAAAAAAAAAACTGGGGGTGGATTT
CGGTGCCCCCCCCCCCCCCCCGCACCATTCCACCGCCGTTTTTCCTTGCA
TACACCCAGGTCTAAGTGAAGCAGCAGATGGTTTCAGGGCACGGTTGACA
TCGTGGGACAAGTTTGTGTTAGGGACGCATAGATTTTTGGAGGGTGCTTC
CGGGCGTGTTCCGATTATGGCAAGGTGATTTTTTATTTGTTTATTTATAC
TCTCTTGGTCTTTTTTTGTTTCCCCTCCACTTCGCCAACACAGTAGTACT
CCGTAATCTTTTTCGAGACACCTCTCAAGTCTACGACTCCTGTAGAAGGT
ACACATCAATCGATGAACACAGCGTAGTACTGTCTCATTTTTTGCGCCGA
CGATGTCGTGTGGTGCAGTACTAGTCCCTACTACTCATAGAAAGAGTGAT
ACGTCATTTGAAGGCGTTCACCGTGGATTGGATTGTGCATACACGTGTAG
TACGTATGTCGATTTTTTTTTTTTTAACTAAGATACCCTTCGCCACTTCT
TTTGAATCTCTTGCGCTTCTGGTCTGTCTTCTTTTTTTTTCTTTCTTTTT
TTTTTCCAAAGCTTCGGTCATGTTAGATTAAGCACAGGCAGGGGAGGGGG
ACTCAACCACCCCCCCGTAAACCCTAAAAACAGTTCTCGCCCCTTGAACT
ACTGCAGTAGGGGTTGAACTGGTACGCCTTGAGAACCGCATATGGCACCC
TCGGCACCACAGTTGGGAGGGCCGGGGTAAGACGTATGAGACAGAACTGT
TGTGAAGGGGATGCCCTTCCAAAGTGGCCGGAAACACGAGCAAGAATAGA
TACTAAGTGCCTGTCCGCGAGTAGATACTCCTTTTATTGGTGTAACACAA
GCAGTCAAGCCCTGTGATGGTATTGGCGGGCGGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig7144:3573..6407+

>mRNA_C-tenellus_contig7144.3.1 ID=mRNA_C-tenellus_contig7144.3.1|Name=mRNA_C-tenellus_contig7144.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=825bp|location=Sequence derived from alignment at C-tenellus_contig7144:3573..6407+ (Choristocarpus tenellus KU2346)
ATGGATCTCCATGCCTTTCTCAGGACACAGGGATGGCTCCACCAAATCCC
TACCGAGAAGTGGGAAAGTAGATATGCTATACTCTCCAACTCGTGTTGTT
GCTTCACCACGCAAGAGGAGGTGCCGAAAACGACGGCATTCAAACCTCGA
CTTTGTTTCAACCCACCCGAATCAACCCTGTCGCGCAAGCGAAAGAGAGG
CAGAGGTTCTAGATCCCCTTCAGGAATGGAAGATGTTCTTGTAACCGACC
TCGAATTCGATATCGCGATTGTTACCACCGAACAAGCTATTCATCAACGC
GCCAACAGTTCACCAGCCGAAAGGATGTCGGCCCTATACTTTCGTTTCGA
AGGTACTACGTACTTCGTTGAGCACACTCTCATGGACGGGATCATGTACC
CTCAAGGTGCTGGAGCTGCATCCGATGGCAAAGGGGACCAACAGGGCGCA
GCCAGCTATGCAGCCGGAAGAAAAGACAGAGAATCAACCAATTCTGTGGA
AACTATACCCTTTGCTGGTTTCATTTTCCCTGGTGTGGTCCTCAAGTTTT
GGACACCGAAGATCCAAGGAAAGGAGGAGGCAGTGCAAACCCTACAGGAT
GTGATCAAGAGAATGATGAACCGCCTCACCCCAGGAGACTGCGCACACCC
ACTCTCCGTGCCTGGGGCATCAGCTTGCGAAGATCTGACGAATGAGACTT
TGCAAGGTCTAAGTGAAGCAGCAGATGGTTTCAGGGCACGGTTGACATCG
TGGGACAAGTTTGTGTTAGGGACGCATAGATTTTTGGAGGGTGCTTCCGG
GCGTGTTCCGATTATGGCAAGGTGA
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