mRNA_C-tenellus_contig7127.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7127.2.1
Unique NamemRNA_C-tenellus_contig7127.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7127.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7127contigC-tenellus_contig7127:4011..6250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2242
Hectar predicted targeting categoryother localisation
Exons1
Cds size2058
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790014.3660965-UTR-C-tenellus_contig7127:4010..41921680790014.3660965-UTR-C-tenellus_contig7127:4010..4192Choristocarpus tenellus KU2346UTRC-tenellus_contig7127 4011..4192 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790014.379784-CDS-C-tenellus_contig7127:4192..62501680790014.379784-CDS-C-tenellus_contig7127:4192..6250Choristocarpus tenellus KU2346CDSC-tenellus_contig7127 4193..6250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7127.2.1prot_C-tenellus_contig7127.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7127 4193..6250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7127.2.1

>prot_C-tenellus_contig7127.2.1 ID=prot_C-tenellus_contig7127.2.1|Name=mRNA_C-tenellus_contig7127.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=686bp
MQNPTSTVISDCQVTHPAESNPLLRKSILPHNRTLARYFPHLSLLSTTMN
TDRLAAAENFALSKEIAELEGRRAPITVEIDPCPFRLHADTVLVARTSMH
PSEDVPQISHFSPSLVGSSPNTPMPKTNEKTVGISPRREKKQARESDLEN
SAKSSQRSMEGIEDGHPPPASMEEVPSVHSYMNAPDALPAPPPLVGPSPV
ELTMMAQEGIAMVAPEAGEEEQARGTNSRNPAKNSQRLVEGIREGRTLPV
PVARTSKPCPSEDSLDILPIPTPLEQPASVTPTNITRKVSVRVEQEAGGE
ELVRETIRETPAKNSQGSINIELVEEVHAPMRSPEVIAPATMKPPFSSDD
SPLANNKFSPSSKVVSDMDVGDWTGTKMGNGAALAQEKISMVSETSSVLS
STSFKDTLNSWEDHIEEAAVISDGVTVAEAAAFMMDEKPPLSRPGSYMSH
TTEGNGASVFPVESEEAFATPFDSVVSGASGGLVVTEWGPEAEGTLCGDS
LFSSGVAMVMTGMKAEEVVMMDSRFQTATDIASTSTVCATNGLQPASESL
VAPSPSPSLKLAPFHLDHKNNKGSQQDRDPEERNGICLNAAMGDPEAEPG
SENPGPPLHTPSVVTTHDGPQRESSERRKGPNTISNLSNPPAYSTSILSN
GVSHYIEKGEELEDTGSHRGGKGHSLATQAADLGLE
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mRNA from alignment at C-tenellus_contig7127:4011..6250+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7127.2.1 ID=mRNA_C-tenellus_contig7127.2.1|Name=mRNA_C-tenellus_contig7127.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2240bp|location=Sequence derived from alignment at C-tenellus_contig7127:4011..6250+ (Choristocarpus tenellus KU2346)
TAGAGAAGGTGGTGAGGATAAGAACAAGGAATGCCGCTGGGAATGAGGGA
AGAGGACCTGAGGGAAAGCTGGAATTGCTGTTAGGTGAGGTATCGCCTCC
CCTATTTGGCCCTCTCGATTGCCAAAAGTAGTCGAGGTCACCCTTTCGCA
TGTAATCTATGTAAAAGGCAACCCTGAAGATAATGCAAAACCCAACCTCC
ACCGTGATATCCGACTGCCAAGTCACTCACCCCGCAGAATCCAATCCACT
TCTGAGGAAATCCATCCTTCCGCATAATCGTACCCTTGCTCGATACTTCC
CACACCTGTCCCTGCTCTCAACTACCATGAATACAGATCGCCTGGCAGCT
GCTGAGAACTTCGCATTAAGCAAGGAGATTGCTGAGCTGGAGGGTAGACG
CGCACCCATCACCGTTGAAATCGACCCTTGCCCGTTCAGGTTGCACGCGG
ACACTGTTTTGGTGGCAAGAACTTCCATGCACCCTTCTGAAGATGTACCA
CAGATTTCGCACTTCTCGCCATCGTTGGTAGGGTCTTCTCCAAACACTCC
CATGCCAAAGACCAATGAGAAAACGGTGGGGATATCGCCTCGACGAGAGA
AGAAACAGGCTAGAGAAAGCGATTTAGAAAATTCAGCGAAGAGCTCCCAA
AGGTCCATGGAAGGGATCGAGGATGGTCACCCCCCACCTGCTTCTATGGA
AGAAGTCCCTTCCGTCCACTCCTATATGAATGCACCGGATGCATTACCCG
CTCCACCACCGTTAGTGGGGCCAAGTCCAGTGGAATTAACCATGATGGCT
CAAGAGGGAATTGCCATGGTAGCACCGGAAGCAGGAGAGGAAGAGCAGGC
TAGAGGGACAAACAGTCGGAATCCAGCAAAGAATTCCCAGAGGTTGGTCG
AGGGGATCAGGGAAGGTCGTACTCTGCCTGTCCCAGTGGCAAGAACATCC
AAACCGTGCCCCTCTGAGGATTCGCTGGATATTCTACCAATCCCAACACC
GTTAGAACAGCCCGCTTCAGTAACTCCCACTAACATAACACGGAAGGTAA
GTGTGAGGGTAGAGCAGGAAGCAGGAGGGGAGGAACTGGTGAGGGAGACA
ATTAGAGAGACTCCAGCAAAGAACTCCCAAGGGTCTATTAATATTGAGTT
GGTCGAGGAGGTTCATGCCCCAATGAGGTCACCAGAGGTCATCGCCCCTG
CAACTATGAAACCTCCATTCAGTTCAGACGACTCTCCTCTTGCCAACAAC
AAATTCTCTCCCTCCTCTAAAGTCGTATCCGACATGGATGTGGGAGACTG
GACTGGGACTAAAATGGGGAATGGGGCAGCACTGGCACAGGAGAAAATCT
CGATGGTGAGTGAAACGTCATCGGTGTTGAGTAGTACATCGTTCAAGGAT
ACTTTAAATTCTTGGGAAGATCACATTGAAGAGGCAGCAGTAATATCTGA
TGGGGTGACAGTGGCAGAGGCAGCTGCTTTTATGATGGATGAGAAACCAC
CACTCTCCCGACCTGGATCGTATATGTCCCATACTACTGAAGGCAATGGA
GCCTCAGTATTTCCTGTGGAGAGTGAAGAAGCGTTTGCTACTCCTTTTGA
TAGTGTTGTATCAGGGGCAAGTGGAGGGCTAGTGGTGACGGAATGGGGAC
CAGAAGCTGAGGGCACCCTTTGTGGAGACAGTCTGTTCTCCAGTGGTGTG
GCGATGGTGATGACCGGGATGAAGGCTGAGGAGGTTGTAATGATGGACTC
TCGATTTCAAACGGCAACAGACATAGCATCCACTTCAACAGTGTGTGCCA
CAAATGGTCTCCAACCAGCTTCAGAGTCGCTTGTCGCCCCCTCACCCTCA
CCCTCACTCAAACTTGCACCTTTCCACTTGGACCACAAGAACAACAAAGG
AAGTCAGCAAGATAGAGATCCAGAAGAGAGGAATGGGATATGCTTGAATG
CTGCTATGGGGGACCCTGAAGCTGAGCCAGGGAGTGAGAACCCTGGTCCT
CCCCTCCATACTCCCTCAGTAGTGACAACACACGATGGGCCCCAGCGAGA
ATCTAGTGAGAGAAGAAAAGGACCAAATACCATTTCCAACCTCTCCAACC
CTCCAGCATACTCAACATCGATATTATCCAATGGCGTCTCTCATTATATC
GAGAAAGGCGAAGAGTTGGAAGATACAGGGTCCCATAGGGGAGGCAAAGG
ACACAGCTTGGCAACACAGGCAGCAGATCTGGGGTTGGAA
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Coding sequence (CDS) from alignment at C-tenellus_contig7127:4011..6250+

>mRNA_C-tenellus_contig7127.2.1 ID=mRNA_C-tenellus_contig7127.2.1|Name=mRNA_C-tenellus_contig7127.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=2058bp|location=Sequence derived from alignment at C-tenellus_contig7127:4011..6250+ (Choristocarpus tenellus KU2346)
ATGCAAAACCCAACCTCCACCGTGATATCCGACTGCCAAGTCACTCACCC
CGCAGAATCCAATCCACTTCTGAGGAAATCCATCCTTCCGCATAATCGTA
CCCTTGCTCGATACTTCCCACACCTGTCCCTGCTCTCAACTACCATGAAT
ACAGATCGCCTGGCAGCTGCTGAGAACTTCGCATTAAGCAAGGAGATTGC
TGAGCTGGAGGGTAGACGCGCACCCATCACCGTTGAAATCGACCCTTGCC
CGTTCAGGTTGCACGCGGACACTGTTTTGGTGGCAAGAACTTCCATGCAC
CCTTCTGAAGATGTACCACAGATTTCGCACTTCTCGCCATCGTTGGTAGG
GTCTTCTCCAAACACTCCCATGCCAAAGACCAATGAGAAAACGGTGGGGA
TATCGCCTCGACGAGAGAAGAAACAGGCTAGAGAAAGCGATTTAGAAAAT
TCAGCGAAGAGCTCCCAAAGGTCCATGGAAGGGATCGAGGATGGTCACCC
CCCACCTGCTTCTATGGAAGAAGTCCCTTCCGTCCACTCCTATATGAATG
CACCGGATGCATTACCCGCTCCACCACCGTTAGTGGGGCCAAGTCCAGTG
GAATTAACCATGATGGCTCAAGAGGGAATTGCCATGGTAGCACCGGAAGC
AGGAGAGGAAGAGCAGGCTAGAGGGACAAACAGTCGGAATCCAGCAAAGA
ATTCCCAGAGGTTGGTCGAGGGGATCAGGGAAGGTCGTACTCTGCCTGTC
CCAGTGGCAAGAACATCCAAACCGTGCCCCTCTGAGGATTCGCTGGATAT
TCTACCAATCCCAACACCGTTAGAACAGCCCGCTTCAGTAACTCCCACTA
ACATAACACGGAAGGTAAGTGTGAGGGTAGAGCAGGAAGCAGGAGGGGAG
GAACTGGTGAGGGAGACAATTAGAGAGACTCCAGCAAAGAACTCCCAAGG
GTCTATTAATATTGAGTTGGTCGAGGAGGTTCATGCCCCAATGAGGTCAC
CAGAGGTCATCGCCCCTGCAACTATGAAACCTCCATTCAGTTCAGACGAC
TCTCCTCTTGCCAACAACAAATTCTCTCCCTCCTCTAAAGTCGTATCCGA
CATGGATGTGGGAGACTGGACTGGGACTAAAATGGGGAATGGGGCAGCAC
TGGCACAGGAGAAAATCTCGATGGTGAGTGAAACGTCATCGGTGTTGAGT
AGTACATCGTTCAAGGATACTTTAAATTCTTGGGAAGATCACATTGAAGA
GGCAGCAGTAATATCTGATGGGGTGACAGTGGCAGAGGCAGCTGCTTTTA
TGATGGATGAGAAACCACCACTCTCCCGACCTGGATCGTATATGTCCCAT
ACTACTGAAGGCAATGGAGCCTCAGTATTTCCTGTGGAGAGTGAAGAAGC
GTTTGCTACTCCTTTTGATAGTGTTGTATCAGGGGCAAGTGGAGGGCTAG
TGGTGACGGAATGGGGACCAGAAGCTGAGGGCACCCTTTGTGGAGACAGT
CTGTTCTCCAGTGGTGTGGCGATGGTGATGACCGGGATGAAGGCTGAGGA
GGTTGTAATGATGGACTCTCGATTTCAAACGGCAACAGACATAGCATCCA
CTTCAACAGTGTGTGCCACAAATGGTCTCCAACCAGCTTCAGAGTCGCTT
GTCGCCCCCTCACCCTCACCCTCACTCAAACTTGCACCTTTCCACTTGGA
CCACAAGAACAACAAAGGAAGTCAGCAAGATAGAGATCCAGAAGAGAGGA
ATGGGATATGCTTGAATGCTGCTATGGGGGACCCTGAAGCTGAGCCAGGG
AGTGAGAACCCTGGTCCTCCCCTCCATACTCCCTCAGTAGTGACAACACA
CGATGGGCCCCAGCGAGAATCTAGTGAGAGAAGAAAAGGACCAAATACCA
TTTCCAACCTCTCCAACCCTCCAGCATACTCAACATCGATATTATCCAAT
GGCGTCTCTCATTATATCGAGAAAGGCGAAGAGTTGGAAGATACAGGGTC
CCATAGGGGAGGCAAAGGACACAGCTTGGCAACACAGGCAGCAGATCTGG
GGTTGGAA
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