mRNA_C-tenellus_contig704.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig704.3.1
Unique NamemRNA_C-tenellus_contig704.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig704.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig704contigC-tenellus_contig704:5293..5838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size546
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790009.0406144-UTR-C-tenellus_contig704:5292..54311680790009.0406144-UTR-C-tenellus_contig704:5292..5431Choristocarpus tenellus KU2346UTRC-tenellus_contig704 5293..5431 +
1680790009.0704792-UTR-C-tenellus_contig704:5740..58381680790009.0704792-UTR-C-tenellus_contig704:5740..5838Choristocarpus tenellus KU2346UTRC-tenellus_contig704 5741..5838 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790009.0520139-CDS-C-tenellus_contig704:5431..57401680790009.0520139-CDS-C-tenellus_contig704:5431..5740Choristocarpus tenellus KU2346CDSC-tenellus_contig704 5432..5740 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig704.3.1prot_C-tenellus_contig704.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig704 5432..5740 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig704.3.1

>prot_C-tenellus_contig704.3.1 ID=prot_C-tenellus_contig704.3.1|Name=mRNA_C-tenellus_contig704.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=103bp
MSPNAHSMGSGGDESQVPGNTYDHTVRRSENHVHAGPTPTPRDKPSEKGK
GKGKRTIVRKKRVREGAGRMRPFKQPRGSDGSTLEPGFFADVFTSAKRAD
TQ*
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mRNA from alignment at C-tenellus_contig704:5293..5838+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig704.3.1 ID=mRNA_C-tenellus_contig704.3.1|Name=mRNA_C-tenellus_contig704.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=546bp|location=Sequence derived from alignment at C-tenellus_contig704:5293..5838+ (Choristocarpus tenellus KU2346)
GTTGAGAGAAGACTCTGAAGGCGATGGGGACCGACCCGATTGTTACGCTT
TGTCAGGTCCAGAGGAACTTGTACGGGAGGACGTGGGTGGGCGGCTAGGC
AGGGACTCAGAGTTCACACCTGTCGGTTGTGACCCCAGAATGTCCCCAAA
CGCCCATTCGATGGGCAGCGGCGGCGATGAGTCCCAAGTGCCAGGGAACA
CCTACGACCATACTGTGAGGCGAAGTGAGAACCACGTCCATGCCGGTCCT
ACCCCAACACCGAGGGACAAGCCTTCCGAGAAGGGTAAAGGAAAGGGGAA
AAGGACAATAGTTAGGAAGAAGAGGGTGAGAGAAGGTGCTGGACGGATGA
GACCCTTCAAACAGCCTCGTGGTTCTGATGGTAGCACTTTAGAACCTGGC
TTCTTCGCAGACGTCTTCACTTCTGCCAAAAGGGCAGATACGCAGTAAAT
CCGTCTTCACCTACCTCAAGGTACAATTGTGTTACACAGGACGCAGCCGA
CTCCAGCGATGCATCTGATGTGGGGATCACAAAGCCTTCATGGAGG
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Coding sequence (CDS) from alignment at C-tenellus_contig704:5293..5838+

>mRNA_C-tenellus_contig704.3.1 ID=mRNA_C-tenellus_contig704.3.1|Name=mRNA_C-tenellus_contig704.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=309bp|location=Sequence derived from alignment at C-tenellus_contig704:5293..5838+ (Choristocarpus tenellus KU2346)
ATGTCCCCAAACGCCCATTCGATGGGCAGCGGCGGCGATGAGTCCCAAGT
GCCAGGGAACACCTACGACCATACTGTGAGGCGAAGTGAGAACCACGTCC
ATGCCGGTCCTACCCCAACACCGAGGGACAAGCCTTCCGAGAAGGGTAAA
GGAAAGGGGAAAAGGACAATAGTTAGGAAGAAGAGGGTGAGAGAAGGTGC
TGGACGGATGAGACCCTTCAAACAGCCTCGTGGTTCTGATGGTAGCACTT
TAGAACCTGGCTTCTTCGCAGACGTCTTCACTTCTGCCAAAAGGGCAGAT
ACGCAGTAA
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