mRNA_C-tenellus_contig7034.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7034.1.2
Unique NamemRNA_C-tenellus_contig7034.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7034.1.2 vs. uniprot
Match: A0A6H5L145_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L145_9PHAE)

HSP 1 Score: 377 bits (969), Expect = 2.170e-125
Identity = 202/342 (59.06%), Postives = 244/342 (71.35%), Query Frame = 1
Query:    1 MAHKVQLALYDLSRGLAKSMSMAILGKQIDGIWHTGVIVYGKEYFFGGGLQSMPHDVFVASHGGVGPNEYIDMGATDLPQDVFEDFNREISSRYTAQTYDLLKHNCNNYSDEVTTFLLGKGIPEYIINLPNEVLNSPMGGMLRPMLEQMTMQMNGADPFAASH---QQPNGVGGGVGDNGVGPPVPLAPAPSPNHNTAPNSMRAVVTGSSGQE-----FPVLDKHTKPLVGSDTGGAAATVAARLKAIGAGVEGLLSKEESALLDALPASLLSSKGTPVCPGSYALLLKILKKPSKWSEKAEFLALLILSLVVLHALEGQEHMATISEVLRRVQIEGDFSDK 1002
            MAH+VQLALYDLSRG+AK+MSMAILGKQIDGIWHTG+IVYGKEYFFGGGLQSMPH+ FV  HGGVGP EYI++G TDL Q++FEDFNRE+  R+TAQTYDL+KHNCN YS+E + FLLGKGIPEYI+NLP EVLNSPMGGMLRP++EQMT QMNGADP++A H   QQ                                        +   +     FP+LDKHTKPLVGSDT  AA  V AR+KA+GA V+ LLS+EE A+LDALP S+ ++K TPV PG + L+ KIL K S W EKA FLAL+++SL+VLH  EG E    + +V +RVQ  G+  ++
Sbjct:    1 MAHRVQLALYDLSRGMAKAMSMAILGKQIDGIWHTGIIVYGKEYFFGGGLQSMPHEQFVQMHGGVGPTEYIELGYTDLTQELFEDFNREVQPRFTAQTYDLMKHNCNTYSNEASQFLLGKGIPEYIVNLPQEVLNSPMGGMLRPLVEQMTTQMNGADPYSALHHLQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAADPPQCKTDGFPILDKHTKPLVGSDTAKAAPGVVARVKALGATVK-LLSEEEIAVLDALPPSMAATKTTPVAPGGFRLMQKILTKDSGWPEKATFLALVLMSLMVLHQAEGTEMEEAMMQVAKRVQTAGNVQEQ 341          
BLAST of mRNA_C-tenellus_contig7034.1.2 vs. uniprot
Match: A0A835YYT1_9STRA (PPPDE putative peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYT1_9STRA)

HSP 1 Score: 261 bits (668), Expect = 2.370e-80
Identity = 153/324 (47.22%), Postives = 201/324 (62.04%), Query Frame = 1
Query:   10 KVQLALYDLSRGLAKSMSMAILGKQIDGIWHTGVIVYGKEYFFGGGLQSMPHDVFVASHGGVGPNEYIDMGATDLPQDVFEDFNREISSRYTAQTYDLLKHNCNNYSDEVTTFLLGKGIPEYIINLPNEVLNSPMGGMLRPMLEQMTMQMNGADPFA-ASHQQPNGVGGGVGDNGVGPPVPLAPAPSPNHNTAPNSMRAVVTG-------------SSGQEFPVLDKHTKPLVGSDTGGAAATVAARLKAIGAGVEGLLSKEESALLDALPASLLSSKGTPVCPGSYALLLKILKKPSKWSEKAEFLALLILSLVVLHALEGQE 939
            KVQLALYDLSRGLA+SMSMA+LG+Q+DGIWHTGVIVYGKEYFF GG+Q+M H+ F A HGG  P +YID+G T +P+D+ +DF REIS R+TA TY+L +HNCNN+SDEV+ FLL +GIPEYIINLPNEVL +PMG M+ PM+EQMT +++G DP A A  Q P  V            V   PAP+     AP                      +SG  +P+L KHTKPL+  DT     TV  RL+  G+     +S  +  +L AL  +L +     +  G+Y LL ++        +++EF  + +L ++ LHA E  E
Sbjct:    3 KVQLALYDLSRGLARSMSMALLGRQVDGIWHTGVIVYGKEYFFSGGIQAMKHEDFCAMHGGFRPEQYIDLGKTQIPEDLLQDFLREISPRFTAMTYNLFRHNCNNFSDEVSRFLLDRGIPEYIINLPNEVLQTPMGRMMVPMVEQMTTELHGGDPLAHAPFQPPASV------------VHATPAPT----AAPXXXXXXXXXXXXXXPAAVPQRDASGNIYPLLSKHTKPLLSPDTS-VITTVVKRLE--GSDAVHHMSPGDKEVLKALSTALTAGSTASLPAGAYGLLARLRAA----HQESEFKLMCLLRVMALHAPESLE 303          
BLAST of mRNA_C-tenellus_contig7034.1.2 vs. uniprot
Match: A0A7S3XW21_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XW21_HETAK)

HSP 1 Score: 201 bits (510), Expect = 1.970e-58
Identity = 92/166 (55.42%), Postives = 124/166 (74.70%), Query Frame = 1
Query:    1 MAHKVQLALYDLSRGLAKSMSMAILGKQIDGIWHTGVIVYGKEYFFGGGLQSMPHDVFVASHGGVGPNEYIDMGATDLPQDVFEDFNREISSRYTAQTYDLLKHNCNNYSDEVTTFLLGKGIPEYIINLPNEVLNSPMGGMLRPMLEQMTMQMNGA------DPFA 480
            MAHKVQLA+YD+S G+A  MS AILG+QI+ I+HTG++VYGKE+FFGGG+Q   H+ FVASHGG+ P +Y+D+G T++P+  F+ F R+ + R+T QTYDL+++NCNN+ D    FLL KGIPEYI+ LP  V ++PMG ML+PM+E M   +N        DPFA
Sbjct:    9 MAHKVQLAVYDISMGMAAQMSAAILGEQIEAIYHTGILVYGKEFFFGGGIQQCAHETFVASHGGIRPIQYLDLGTTNIPEHEFQKFLRDNNHRFTMQTYDLIRNNCNNFCDACAHFLLDKGIPEYIVKLPERVFSTPMGMMLKPMIENMQSSINSPMGGGTLDPFA 174          
BLAST of mRNA_C-tenellus_contig7034.1.2 vs. uniprot
Match: K3WZI6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZI6_GLOUD)

HSP 1 Score: 197 bits (500), Expect = 1.710e-55
Identity = 92/165 (55.76%), Postives = 128/165 (77.58%), Query Frame = 1
Query:   13 VQLALYDLSRGLAKSMSMAILGKQIDGIWHTGVIVYGKEYFFGGGLQSMPHDVFVASHGGVGPNEYIDMGATDLPQDVFEDFNREISSRYTAQTYDLLKHNCNNYSDEVTTFLLGKGIPEYIINLPNEVLNSPMGGMLRPMLEQMTMQMN--GADPFAASHQQPN 501
            V L +YDLSRG+A+ +S A+LGKQIDGIWHTGV+VYGKEYFFGGG+Q M  ++ VA +G + P + + +G T +P + FEDF ++IS R+T  TYDLL++NCNN+S+E++ FL+G GIP++I++LPNE L++P+G MLRPM+E M  +MN  GA PFA     P+
Sbjct:   15 VSLRVYDLSRGMARQLSPALLGKQIDGIWHTGVLVYGKEYFFGGGIQVMAPELVVARYG-MQPVQVVPLGTTSVPMERFEDFLQQISPRFTTMTYDLLRNNCNNFSNELSMFLVGTGIPQHILDLPNEALSTPLGAMLRPMIENMQREMNATGAQPFAIPFNDPS 178          
BLAST of mRNA_C-tenellus_contig7034.1.2 vs. uniprot
Match: A0A6D2HV83_9BRAS (PPPDE domain-containing protein n=2 Tax=Coluteocarpeae TaxID=1394505 RepID=A0A6D2HV83_9BRAS)

HSP 1 Score: 191 bits (484), Expect = 1.830e-55
Identity = 102/205 (49.76%), Postives = 136/205 (66.34%), Query Frame = 1
Query:    4 AHKVQLALYDLSRGLAKSMSMAILGKQIDGIWHTGVIVYGKEYFFGGGLQSMPHDVFVASHGGVGPNEYIDMGATDLPQDVFEDFNREISSRYTAQTYDLLKHNCNNYSDEVTTFLLGKGIPEYIINLPNEVLNSPMGGMLRPMLEQMTMQMN-GADPFAAS---HQQPNGVGGGVGDNGVGPPVPLAPAPSPNHNTAPNSMRAV 606
            AH+V L +YDLS+GLA+ +S ++LGK I+G+WHTGV+VYG EYFFGGG+Q +P       +G   P   I++G + +PQDVFE + +EIS RYTA++Y+LL HNCNN+S+EV  FL+GKGIP+YI+ LPNEV+NSPMGG+L PM++ +   +  GA P A      QQP   G    D G   P P   A  P  + A  S   V
Sbjct:    5 AHRVTLNVYDLSQGLARQLSASLLGKVIEGVWHTGVVVYGNEYFFGGGIQHLPAGT--TPYGA--PLRIIELGESHVPQDVFEMYLQEISPRYTAESYNLLTHNCNNFSNEVAQFLVGKGIPDYILQLPNEVMNSPMGGLLMPMIQNLETTLRAGAVPHAPQFRPQQQPQPFGAFSRDEG---PKPSEKASKPEDSKASASTTKV 202          
BLAST of mRNA_C-tenellus_contig7034.1.2 vs. uniprot
Match: A9SH91_PHYPA (Predicted protein (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SH91_PHYPA)

HSP 1 Score: 187 bits (476), Expect = 2.140e-54
Identity = 110/229 (48.03%), Postives = 144/229 (62.88%), Query Frame = 1
Query:   10 KVQLALYDLSRGLAKSMSMAILGKQIDGIWHTGVIVYGKEYFFGGGLQSMPHDVFVASHGGVGPNEYIDMGATDLPQDVFEDFNREISSRYTAQTYDLLKHNCNNYSDEVTTFLLGKGIPEYIINLPNEVLNSPMGGMLRPMLEQM-TMQMNGADPFAASHQQPNGVGGGV-----------------GDNGVGPPVPLAPAPSPNHNTAPNSMRAVVTGSSGQEFPVL 642
            KV+L +YDLS+GLA+ +S   LGK I+GIWHTGV VYGKEYFFGGG+QS+P  +  + +G   P +   +G T++PQ+VFE++ R+I  RYT QTY L+KHNCNN+SDEV  FL+G GIPEYI+ LP EVL+SPMGG+LRPM+E + T   NG  P A     P  VG G                  G+  +   +P  PAP   H+    + RA VT    QEF ++
Sbjct:    5 KVELYVYDLSQGLARQLSSQFLGKVIEGIWHTGVGVYGKEYFFGGGIQSVP--LKQSPYGQ--PVQVAQLGTTEVPQEVFEEYLRDIQPRYTQQTYSLMKHNCNNFSDEVCQFLVGSGIPEYILRLPEEVLSSPMGGLLRPMIENLETTLRNGGVPGA-----PYQVGSGQAVPNFANTSTSEGTEKKGNEDLPTSLPT-PAPPAGHDLT--NARAKVTQEITQEFALI 221          
BLAST of mRNA_C-tenellus_contig7034.1.2 vs. uniprot
Match: UPI00053C6B0B (desumoylating isopeptidase 1-like n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C6B0B)

HSP 1 Score: 188 bits (477), Expect = 2.500e-54
Identity = 91/166 (54.82%), Postives = 119/166 (71.69%), Query Frame = 1
Query:    4 AHKVQLALYDLSRGLAKSMSMAILGKQIDGIWHTGVIVYGKEYFFGGGLQSMPHDVFVASHGGVG-PNEYIDMGATDLPQDVFEDFNREISSRYTAQTYDLLKHNCNNYSDEVTTFLLGKGIPEYIINLPNEVLNSPMGGMLRPMLEQMTMQMNGADPFAASHQQP 498
            AH+V L +YDLS+GLA+ +S   LGK IDGIWHTGV+VYG EYFFGGG+QS+P     A     G P   I++G T +P DVFE + +EIS RYTA+TY LL HNCNN+S+EV+ FL+GKGIP+YI+ LPNEV+NSPMGG++ PM++ +   +         H +P
Sbjct:    5 AHRVTLNVYDLSQGLARQLSTTFLGKAIDGIWHTGVVVYGNEYFFGGGIQSLP-----AGRTPYGTPVRVIELGETHVPNDVFEMYLQEISPRYTAETYSLLSHNCNNFSNEVSQFLVGKGIPDYILQLPNEVMNSPMGGLIMPMIQNIEATLRAGAVPQVPHFRP 165          
BLAST of mRNA_C-tenellus_contig7034.1.2 vs. uniprot
Match: V4LZM7_EUTSA (PPPDE domain-containing protein n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4LZM7_EUTSA)

HSP 1 Score: 187 bits (474), Expect = 7.020e-54
Identity = 105/221 (47.51%), Postives = 142/221 (64.25%), Query Frame = 1
Query:    4 AHKVQLALYDLSRGLAKSMSMAILGKQIDGIWHTGVIVYGKEYFFGGGLQSMPHDVFVASHGGVGPNEYIDMGATDLPQDVFEDFNREISSRYTAQTYDLLKHNCNNYSDEVTTFLLGKGIPEYIINLPNEVLNSPMGGMLRPMLEQMTMQMN-GADPFAASHQ-QPNGVGGGVGDNGVGPPVPLAPAPSPNHN-----TAPNSMRAVVTGSSGQEFPVLD 645
            AH V L +YDLSRGLA+ +S ++LGK I+G+WHTG+++YG EYFFGGG+Q +P       +G   P   I++G + +PQDVFE + +EIS RYTA +Y+LL HNCNN+S+EV  FL+GKGIP+YI+ LPNEVLNSPMGG+L PM++ +   +  GA P A   + QP   G    D G        P PS N +      A NS  A  +  S +  PV++
Sbjct:    5 AHWVSLNVYDLSRGLARQLSASLLGKVIEGVWHTGIVIYGNEYFFGGGIQHLPAGT--TPYGT--PVRTIELGQSHIPQDVFEMYLQEISPRYTADSYNLLTHNCNNFSNEVAQFLVGKGIPDYILQLPNEVLNSPMGGLLMPMIQNLETTLRAGAVPNAPQFRPQPQPFGAFSKDEG--------PKPSDNGDHFKFENASNSDDAKTSDPSEKVAPVVE 213          
BLAST of mRNA_C-tenellus_contig7034.1.2 vs. uniprot
Match: A0A5D6XW69_9STRA (PPPDE domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XW69_9STRA)

HSP 1 Score: 188 bits (478), Expect = 1.340e-53
Identity = 91/165 (55.15%), Postives = 124/165 (75.15%), Query Frame = 1
Query:   13 VQLALYDLSRGLAKSMSMAILGKQIDGIWHTGVIVYGKEYFFGGGLQSMPHDVFVASHGGVGPNEYIDMGATDLPQDVFEDFNREISSRYTAQTYDLLKHNCNNYSDEVTTFLLGKGIPEYIINLPNEVLNSPMGGMLRPMLEQMTMQMN--GADPFAASHQQPN 501
            V L +YDLSRG+A+ +S A+LGKQIDGIWHTGV+VYG+EYF+GGG+Q M  ++ V  +G + P + + +GAT +P + FE F REIS R+TA  YDLL++NCNN+S+E+  FLLG GIP++I+ LP+EVL++P G MLRPML+ M  +M   GA PFA     P+
Sbjct:   11 VSLRVYDLSRGMARQLSPALLGKQIDGIWHTGVLVYGQEYFYGGGIQKMAPELVVERYG-MPPVQVVPLGATSVPVERFEAFLREISPRFTAANYDLLRNNCNNFSNELAGFLLGSGIPQHILALPDEVLSTPFGAMLRPMLDNMQREMGAAGAQPFAIPFNDPS 174          
BLAST of mRNA_C-tenellus_contig7034.1.2 vs. uniprot
Match: A0A8K1CM77_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CM77_PYTOL)

HSP 1 Score: 199 bits (506), Expect = 1.610e-53
Identity = 96/165 (58.18%), Postives = 129/165 (78.18%), Query Frame = 1
Query:   13 VQLALYDLSRGLAKSMSMAILGKQIDGIWHTGVIVYGKEYFFGGGLQSMPHDVFVASHGGVGPNEYIDMGATDLPQDVFEDFNREISSRYTAQTYDLLKHNCNNYSDEVTTFLLGKGIPEYIINLPNEVLNSPMGGMLRPMLEQMTMQMN--GADPFAASHQQPN 501
            V L +YDLSRG+A+ +S ++LGKQIDGIWHTGV+VYG+EYF+GGG+Q M  ++ VA +G + P + IDMG T + Q  FE F R IS R+TAQ YDLL+HNCNN+S+E+TT+LLGK IP++I++LPNE L++PMG MLRPM+E M  QM+  G++PFA     P+
Sbjct:  812 VVLRVYDLSRGMARQLSPSLLGKQIDGIWHTGVLVYGQEYFYGGGVQVMAPELVVARYG-MQPVQQIDMGTTHVAQHDFETFLRGISPRFTAQAYDLLRHNCNNFSNELTTYLLGKSIPQHILDLPNEALSTPMGAMLRPMIENMQQQMHATGSEPFAIPFNDPS 975          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7034.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L145_9PHAE2.170e-12559.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YYT1_9STRA2.370e-8047.22PPPDE putative peptidase domain-containing protein... [more]
A0A7S3XW21_HETAK1.970e-5855.42Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
K3WZI6_GLOUD1.710e-5555.76Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6D2HV83_9BRAS1.830e-5549.76PPPDE domain-containing protein n=2 Tax=Coluteocar... [more]
A9SH91_PHYPA2.140e-5448.03Predicted protein (Fragment) n=1 Tax=Physcomitrium... [more]
UPI00053C6B0B2.500e-5454.82desumoylating isopeptidase 1-like n=1 Tax=Tarenaya... [more]
V4LZM7_EUTSA7.020e-5447.51PPPDE domain-containing protein n=1 Tax=Eutrema sa... [more]
A0A5D6XW69_9STRA1.340e-5355.15PPPDE domain-containing protein n=1 Tax=Pythium br... [more]
A0A8K1CM77_PYTOL1.610e-5358.18Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7034contigC-tenellus_contig7034:3485..6919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FR46
PFAMsPUB,PUL,Peptidase_C69,Peptidase_C97,UBA
Model size1002
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons8
Evalue2.33e-132
EggNOG OGsKOG0324@1|root,KOG0324@2759|Eukaryota
DescriptionLys63-specific deubiquitinase activity
Cds size1002
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7034.1.2prot_C-tenellus_contig7034.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7034 3485..6919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790008.7231572-CDS-C-tenellus_contig7034:3484..35391680790008.7231572-CDS-C-tenellus_contig7034:3484..3539Choristocarpus tenellus KU2346CDSC-tenellus_contig7034 3485..3539 +
1680790008.7338111-CDS-C-tenellus_contig7034:3776..38461680790008.7338111-CDS-C-tenellus_contig7034:3776..3846Choristocarpus tenellus KU2346CDSC-tenellus_contig7034 3777..3846 +
1680790008.7464387-CDS-C-tenellus_contig7034:4048..41631680790008.7464387-CDS-C-tenellus_contig7034:4048..4163Choristocarpus tenellus KU2346CDSC-tenellus_contig7034 4049..4163 +
1680790008.7597241-CDS-C-tenellus_contig7034:4467..46001680790008.7597241-CDS-C-tenellus_contig7034:4467..4600Choristocarpus tenellus KU2346CDSC-tenellus_contig7034 4468..4600 +
1680790008.7694707-CDS-C-tenellus_contig7034:4809..48921680790008.7694707-CDS-C-tenellus_contig7034:4809..4892Choristocarpus tenellus KU2346CDSC-tenellus_contig7034 4810..4892 +
1680790008.779821-CDS-C-tenellus_contig7034:5114..53451680790008.779821-CDS-C-tenellus_contig7034:5114..5345Choristocarpus tenellus KU2346CDSC-tenellus_contig7034 5115..5345 +
1680790008.7936285-CDS-C-tenellus_contig7034:6057..62451680790008.7936285-CDS-C-tenellus_contig7034:6057..6245Choristocarpus tenellus KU2346CDSC-tenellus_contig7034 6058..6245 +
1680790008.8080013-CDS-C-tenellus_contig7034:6792..69191680790008.8080013-CDS-C-tenellus_contig7034:6792..6919Choristocarpus tenellus KU2346CDSC-tenellus_contig7034 6793..6919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7034.1.2

>prot_C-tenellus_contig7034.1.2 ID=prot_C-tenellus_contig7034.1.2|Name=mRNA_C-tenellus_contig7034.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=334bp
MAHKVQLALYDLSRGLAKSMSMAILGKQIDGIWHTGVIVYGKEYFFGGGL
QSMPHDVFVASHGGVGPNEYIDMGATDLPQDVFEDFNREISSRYTAQTYD
LLKHNCNNYSDEVTTFLLGKGIPEYIINLPNEVLNSPMGGMLRPMLEQMT
MQMNGADPFAASHQQPNGVGGGVGDNGVGPPVPLAPAPSPNHNTAPNSMR
AVVTGSSGQEFPVLDKHTKPLVGSDTGGAAATVAARLKAIGAGVEGLLSK
EESALLDALPASLLSSKGTPVCPGSYALLLKILKKPSKWSEKAEFLALLI
LSLVVLHALEGQEHMATISEVLRRVQIEGDFSDK
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mRNA from alignment at C-tenellus_contig7034:3485..6919+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7034.1.2 ID=mRNA_C-tenellus_contig7034.1.2|Name=mRNA_C-tenellus_contig7034.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3435bp|location=Sequence derived from alignment at C-tenellus_contig7034:3485..6919+ (Choristocarpus tenellus KU2346)
ATGGCTCACAAGGTGCAACTGGCACTCTATGACCTGTCGAGAGGCCTTGC GAAGTGTGAGTTATTGGTGCTGAGTATGCAGTTGATGTTTAAAAAAATTG TCCTTGTGATCAGAACCTCGCCTGCTCCACCTTCTAATGGACGCCAGTGT AAAGTGCACAGATTTTCATCTTCACGAACTCATGGCTCCTCTTCTCTCTA TGAGTGTGCGATAGATGCAACTCGGCAACAATGACGACCCCCAAGTTGAC CGAACCCTTTCTAACCGCACACGCTGACGTATCCACTCGCAGCCATGTCC ATGGCGATACTCGGCAAACAAATCGACGGGATCTGGCACACAGGAGTAAT CGTCTACGGGAAGTGGGTATACACGCAGTTGCAACCGCTTTTTTTGTGTG TTTTTATATGTAAGAGTACTCGAAAGTTGGATGGTGAACTTCCAACTTCC GCAGCTTGGATATTTTGCTTCCTTGCAAGTACTCCCAACCTCGCTCTGCA ACCTTAATCTTCAACCGATGACCCCGACCTACTCATATTCCCTTCCTGCC TTCGCTTGTGTTAGGGAGTATTTCTTTGGAGGTGGTCTGCAGAGCATGCC ACATGATGTCTTTGTTGCCTCACATGGTGGTGTTGGTCCCAATGAGTACA TCGACATGGGAGCAACCGACCTTCCCCAGGTGAGCGGGCATTTAGTCTCT GCTCCCAATCCATGACCAAATCCTTGAAAGGGAGTTAGTCTTAAATGCCT GAACTTGATCTTCACAACTCGCTCTCAACAGTAGTAGATCTGAGGTCCTC TGAAATTGATCCACTACTTAGTTTTCGTCCGGATTTCGCCATGATTCATA AGCATTCCTTTGGCCATGAAAGAGGTTTGTAGTGCCATGCATGTTGCAGA CAAGAATGTGCACTCTGTCTAACAATCTAGTATGGTCTGTCCTAACAACT GAAGTAATATGTTACGCTATATCCCCACGTAAGGATGTCTTCGAAGACTT CAATCGCGAGATCAGCAGCCGCTACACGGCGCAAACCTACGACCTGCTCA AGCACAATTGCAACAACTACTCCGACGAGGTCACTACCTTCCTTCTAGGG AAGGGGATTCCTGAATGTGAATAGAAGCAAGCCATACCTTCCGATGTTGA GTGTGTCCAAAGTTGTTGGTATCACGACAACCAGAGTCGAAGCAGTTAAC TACTTGACCATAGTCCTCACGGCATATACGAGTGTGAAGACCCAATCTGA GAAAATTTCGCCCTTCCCTTACCTGACTTGTTCTTGTCAAACCTTTTTGC TGGTGTCTCTGTGACCTCTGTGCAGACATTATCAACTTACCCAATGAGGT GTTGAACTCTCCAATGGGGGGCATGCTTCGTCCCATGCTGGAGCAGATGA CCATGCAGGTGTTCCGAGCCACCTTAATGCACTAAAAAATCATTCTGCAG AAGCAGTCTGTACCCACTGTGATCAGTCATTACTGCTCCCGCAGCCTCAC TGCATTCTAATACCTCCTTTTTTTTCTTTTTTTGAGGCATTTAGACCCAA ATCTGCCCACCATACTCTCATCTCCTTCACCCCCCTGTACTCATTATGCT ATCATGATCTCCTTACACTTCGGATATCAGATGAATGGAGCCGACCCTTT TGCAGCTTCACACCAGCAACCCAATGGCGTGGGAGGCGGAGTTGGTGATA ATGGTGTTGGTCCACCAGTTCCCCTTGCACCTGCCCCATCCCCTAATCAC AACACTGCGCCAAATTCAATGCGGGCAGTGGTAACCGGGTCAAGTGGCCA AGAATTTCCAGTTCTCGACAAGCACACAAAGCCTCTCGTGGGCTCAGATA CAGGTGGCGCTGTGAGTGACCATTGCAATAGGCAGATAAGGGAGTATTTG CCTATTTTCAGATAGGCCGGGAAATTGTAGGGGATGGCACAACTGCATGT GCCAGGGAATATTCTTGTTTTGGAATGATACTTGCTAGAGCTCTGGTTGG CTTGGAAATTGTTTTTGTTGTGTGTACATCTCTGGTGTGAGGGCAAGGGA ATCACTTAGCACCGTGATGCTGTTGAAGTACCCTGTATTCTGATAATGGA GAGTGCCTACTACCAATTTCCATGCAACGGCCCTTACATATGCTAGTGAA ATCTGTGCCCGTGCTCGTTGCAGTTCGTACTGGAAGTGGGAACTTACTGT GTTGAGTTTACCTGTTCCCTGCGACTGATTTCGTAGTGTTGTAAACTGAA GGCATGTATGATGAGTGTGAGTTCAATCAGCTCGAAGAGCTTCGTTTTGT TCAATTACAATCAAAACATACATGCAGCGCCCATTCATGCACAAGAAGTA ACCAATCAAAACCACCCCTCAATGTTTTTGTTTTTAATCAATCGTGATTA AATTGAATGATAGTGATACAATCGATCCGATTTCATAACACTAAGGTTTT GAGAAGGGATTCAATATTTTAGCCTACATGACTCAGCCTTTGATGTTATC TCTCCCCTCTTCCCCCCCCTCCCCCCCCAAAAAACTCTCTAACTCTCCCA TACTGCACTGGGAAACCTGGAAGGCGGCTACTGTAGCGGCAAGGCTCAAG GCCATTGGGGCTGGTGTGGAGGGTTTGCTGAGCAAGGAAGAGTCTGCCCT GCTTGATGCCCTGCCAGCCTCCCTCTTGAGCAGTAAGGGCACCCCTGTCT GTCCAGGAAGCTATGCCCTCTTGCTTAAGATCCTGAAAAAGCCATCAAAA TGGTCAGAAAAGTGAGAAATTTTGACATCACACCGTGTACTAGTATGTGA AATTCAAGAAGAAAATAAGTGTTTTTGGAATGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGCTCTCTGATGTTCTTGTGATGCCACTTCCATGTA GTCAAGTAGCTACCCTCTTTTAAGAGGAGGAAGAGCGAGAGGTGTGCATT CAGGAAGGGTACCTTTTGATCCACGTGTGACTTTCTAGTCAGCTTCATAG TGCTGGTGCATGTGACTCTTGGGATTGCCACCAAGTTCTTTAGTTGCAAC AGATGGAGTTTACTGTTTGAAATTGTATTTTTGGTCTTGTTTTCCCCTGC AAGGACAGCTGGGGATCCTGACTATGTGCACGGGGGCTTTAGCACCTGGT GATGCCATCAATTATCCATGCCTGAGTTGTTACGCGCTGGAAAGCACAAG CTCGTTTCATTGGTGGGCAAATATTTGATCTGTATCCAGGAGTTGGATAT TTATTATTCCTGATATCATCCCCTGAACTAGGAATGTTCCTTTGTCCAAA ATGTGCAGAGCCGAGTTTTTGGCGTTATTGATCCTTAGCCTGGTGGTCTT GCATGCTTTGGAGGGACAGGAGCACATGGCAACAATTTCAGAGGTGTTGA GGCGTGTGCAGATAGAGGGCGACTTCTCGGACAAG
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Coding sequence (CDS) from alignment at C-tenellus_contig7034:3485..6919+

>mRNA_C-tenellus_contig7034.1.2 ID=mRNA_C-tenellus_contig7034.1.2|Name=mRNA_C-tenellus_contig7034.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=1002bp|location=Sequence derived from alignment at C-tenellus_contig7034:3485..6919+ (Choristocarpus tenellus KU2346)
ATGGCTCACAAGGTGCAACTGGCACTCTATGACCTGTCGAGAGGCCTTGC
GAAGTCCATGTCCATGGCGATACTCGGCAAACAAATCGACGGGATCTGGC
ACACAGGAGTAATCGTCTACGGGAAGGAGTATTTCTTTGGAGGTGGTCTG
CAGAGCATGCCACATGATGTCTTTGTTGCCTCACATGGTGGTGTTGGTCC
CAATGAGTACATCGACATGGGAGCAACCGACCTTCCCCAGGATGTCTTCG
AAGACTTCAATCGCGAGATCAGCAGCCGCTACACGGCGCAAACCTACGAC
CTGCTCAAGCACAATTGCAACAACTACTCCGACGAGGTCACTACCTTCCT
TCTAGGGAAGGGGATTCCTGAATACATTATCAACTTACCCAATGAGGTGT
TGAACTCTCCAATGGGGGGCATGCTTCGTCCCATGCTGGAGCAGATGACC
ATGCAGATGAATGGAGCCGACCCTTTTGCAGCTTCACACCAGCAACCCAA
TGGCGTGGGAGGCGGAGTTGGTGATAATGGTGTTGGTCCACCAGTTCCCC
TTGCACCTGCCCCATCCCCTAATCACAACACTGCGCCAAATTCAATGCGG
GCAGTGGTAACCGGGTCAAGTGGCCAAGAATTTCCAGTTCTCGACAAGCA
CACAAAGCCTCTCGTGGGCTCAGATACAGGTGGCGCTGCGGCTACTGTAG
CGGCAAGGCTCAAGGCCATTGGGGCTGGTGTGGAGGGTTTGCTGAGCAAG
GAAGAGTCTGCCCTGCTTGATGCCCTGCCAGCCTCCCTCTTGAGCAGTAA
GGGCACCCCTGTCTGTCCAGGAAGCTATGCCCTCTTGCTTAAGATCCTGA
AAAAGCCATCAAAATGGTCAGAAAAAGCCGAGTTTTTGGCGTTATTGATC
CTTAGCCTGGTGGTCTTGCATGCTTTGGAGGGACAGGAGCACATGGCAAC
AATTTCAGAGGTGTTGAGGCGTGTGCAGATAGAGGGCGACTTCTCGGACA
AG
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