mRNA_C-tenellus_contig7027.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7027.1.1
Unique NamemRNA_C-tenellus_contig7027.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7027.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7027contigC-tenellus_contig7027:2812..3458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size647
Hectar predicted targeting categorymitochondrion
Exons1
Cds size351
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790008.3445265-UTR-C-tenellus_contig7027:2811..30491680790008.3445265-UTR-C-tenellus_contig7027:2811..3049Choristocarpus tenellus KU2346UTRC-tenellus_contig7027 2812..3049 -
1680790008.3713915-UTR-C-tenellus_contig7027:3400..34581680790008.3713915-UTR-C-tenellus_contig7027:3400..3458Choristocarpus tenellus KU2346UTRC-tenellus_contig7027 3401..3458 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790008.3598998-CDS-C-tenellus_contig7027:3049..34001680790008.3598998-CDS-C-tenellus_contig7027:3049..3400Choristocarpus tenellus KU2346CDSC-tenellus_contig7027 3050..3400 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7027.1.1prot_C-tenellus_contig7027.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7027 3050..3400 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7027.1.1

>prot_C-tenellus_contig7027.1.1 ID=prot_C-tenellus_contig7027.1.1|Name=mRNA_C-tenellus_contig7027.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=117bp
MRARRRCSYFHSSWMSCTGHIWRTLKIYVTAPLLILEKENVRYFSPSIHP
SFPCWTVRTGCQLSRCRGVASCRYCPTSGSHHRQQGGLARCFIYLSGAIV
SHQVFSLFGGPNILVS*
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mRNA from alignment at C-tenellus_contig7027:2812..3458-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7027.1.1 ID=mRNA_C-tenellus_contig7027.1.1|Name=mRNA_C-tenellus_contig7027.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=647bp|location=Sequence derived from alignment at C-tenellus_contig7027:2812..3458- (Choristocarpus tenellus KU2346)
CTCCAAACTGCTTCCTCCGTTCCATAGTGAAAATGGTTTTTTTTTTTAAG
AGGACAGGATGAGAGCGAGGAGACGATGTTCATATTTTCATTCTTCATGG
ATGTCTTGTACGGGCCATATTTGGCGTACTCTCAAAATCTACGTTACTGC
CCCCCTATTAATCCTTGAAAAAGAAAATGTGCGGTATTTTTCACCATCCA
TCCACCCAAGCTTTCCTTGTTGGACAGTCCGCACTGGCTGTCAGCTTTCC
CGATGCCGGGGTGTGGCATCCTGTAGGTATTGTCCCACTTCGGGATCTCA
CCATCGACAGCAAGGAGGTCTTGCCAGGTGTTTTATCTATCTCTCAGGAG
CGATAGTCAGTCATCAAGTATTTTCTCTTTTCGGTGGCCCCAATATCCTT
GTGAGTTGATGTCGTTACCTCTATATGTTTGTCCTTCATATATAAATTGT
GTTCCTCATTTAATACGGTTGTCGCCTTCAGAAAGGAAGAGGATACTGCT
GTGGCTGGGAAGTGAAGGGAGATATCTGTAGAAGCAAGGGCAGTACGTGG
CGAAAATAAGAAGATATATTGCCTCTCTGAGGAGGGGAAGGGAGGTTTAG
GATCGTCCAAAGATTCGCAACAAGGAAGTGACACGTGTAGGTTGGAC
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Coding sequence (CDS) from alignment at C-tenellus_contig7027:2812..3458-

>mRNA_C-tenellus_contig7027.1.1 ID=mRNA_C-tenellus_contig7027.1.1|Name=mRNA_C-tenellus_contig7027.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=351bp|location=Sequence derived from alignment at C-tenellus_contig7027:2812..3458- (Choristocarpus tenellus KU2346)
ATGAGAGCGAGGAGACGATGTTCATATTTTCATTCTTCATGGATGTCTTG
TACGGGCCATATTTGGCGTACTCTCAAAATCTACGTTACTGCCCCCCTAT
TAATCCTTGAAAAAGAAAATGTGCGGTATTTTTCACCATCCATCCACCCA
AGCTTTCCTTGTTGGACAGTCCGCACTGGCTGTCAGCTTTCCCGATGCCG
GGGTGTGGCATCCTGTAGGTATTGTCCCACTTCGGGATCTCACCATCGAC
AGCAAGGAGGTCTTGCCAGGTGTTTTATCTATCTCTCAGGAGCGATAGTC
AGTCATCAAGTATTTTCTCTTTTCGGTGGCCCCAATATCCTTGTGAGTTG
A
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