mRNA_C-tenellus_contig7016.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7016.1.1
Unique NamemRNA_C-tenellus_contig7016.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7016.1.1 vs. uniprot
Match: A0A7S0DTY7_9EUKA (ADP-ribosylation factor-like protein 2-binding protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DTY7_9EUKA)

HSP 1 Score: 73.2 bits (178), Expect = 1.300e-14
Identity = 31/58 (53.45%), Postives = 46/58 (79.31%), Query Frame = 1
Query:   46 IEGHIDEKLSAGISAFSMETFLKMMVEREDEITGDVFDMLMTLGEFSEFRNMMLAHKA 219
            IEG +++++ A +  +S E F+ M+ +R DEI+GDVFDMLM++G+F EFR +MLAHKA
Sbjct:   83 IEGVVEKEVKARVQGYSSERFMAMLKDRPDEISGDVFDMLMSMGDFEEFRGLMLAHKA 140          
BLAST of mRNA_C-tenellus_contig7016.1.1 vs. uniprot
Match: A0A6H5KLK6_9PHAE (ADP-ribosylation factor-like protein 2-binding protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLK6_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 3.500e-13
Identity = 30/59 (50.85%), Postives = 43/59 (72.88%), Query Frame = 1
Query:   46 IEGHIDEKLSAGISAFSMETFLKMMVEREDEITGDVFDMLMTLGEFSEFRNMMLAHKAG 222
            +E H+D  L   I  F METF+KM+ ER+ E+ GDV D+LM +G+F+EF+ MM+AH+ G
Sbjct:   91 VERHLDGWLRQRIRGFEMETFMKMVAERQGEVVGDVIDILMAVGDFAEFKGMMVAHRKG 149          
BLAST of mRNA_C-tenellus_contig7016.1.1 vs. uniprot
Match: A0A7S2BYQ0_9STRA (ADP-ribosylation factor-like protein 2-binding protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BYQ0_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.740e-13
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 1
Query:   46 IEGHIDEKLSAGISAFSMETFLKMMVEREDEITGDVFDMLMTLGEFSEFRNMMLAHK 216
            IE  I++++S  I  FSME F +M+  REDEI GD FDMLMTLG+F EF+ +ML +K
Sbjct:   78 IESFIEKRVSEEIETFSMEAFGEMLQNREDEICGDAFDMLMTLGDFGEFKELMLDYK 134          
BLAST of mRNA_C-tenellus_contig7016.1.1 vs. uniprot
Match: F0YLV8_AURAN (ADP-ribosylation factor-like protein 2-binding protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLV8_AURAN)

HSP 1 Score: 68.2 bits (165), Expect = 9.510e-13
Identity = 30/75 (40.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:    1 DSPHPYFLLIPDTCKI-EGHIDEKLSAGISAFSMETFLKMMVEREDEITGDVFDMLMTLGEFSEFRNMMLAHKAG 222
            ++ H Y  L  D   + E  ++ +L A ++ F ++ F+  + ER +EITGDVFD+L+ L +F+EF+ MMLA+K G
Sbjct:   54 ENKHEYLGLFQDYAALMEAEVEARLQASLAGFDLQHFMAQLAERREEITGDVFDLLLGLSDFAEFKEMMLAYKRG 128          
BLAST of mRNA_C-tenellus_contig7016.1.1 vs. uniprot
Match: D7FPD1_ECTSI (ADP-ribosylation factor-like protein 2-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPD1_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 7.870e-12
Identity = 29/59 (49.15%), Postives = 42/59 (71.19%), Query Frame = 1
Query:   46 IEGHIDEKLSAGISAFSMETFLKMMVEREDEITGDVFDMLMTLGEFSEFRNMMLAHKAG 222
            +E H+D  L   I  F METF+KM+ ER+ E+  DV D+LM +G+F+EF+ MM+AH+ G
Sbjct:  100 VERHLDGWLRQRIRGFEMETFMKMVAERQGEVVDDVSDILMAVGDFAEFKGMMVAHRKG 158          
BLAST of mRNA_C-tenellus_contig7016.1.1 vs. uniprot
Match: A0A6V2TH31_HETAK (ADP-ribosylation factor-like protein 2-binding protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2TH31_HETAK)

HSP 1 Score: 65.1 bits (157), Expect = 3.230e-11
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 1
Query:   46 IEGHIDEKLSAGISAFSMETFLKMMVERED--EITGDVFDMLMTLGEFSEFRNMMLAHKAG 222
            IE  +  +L+A +  FSME FLK + ER +  E+TGDVFDML++L +F EF+++ML+HK G
Sbjct:  101 IEEFLAGRLAAAVPGFSMERFLKQLEERNERGEVTGDVFDMLLSLTDFMEFKHIMLSHKEG 161          
BLAST of mRNA_C-tenellus_contig7016.1.1 vs. uniprot
Match: A0A7S3GWD6_9STRA (ADP-ribosylation factor-like protein 2-binding protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GWD6_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.760e-10
Identity = 25/60 (41.67%), Postives = 47/60 (78.33%), Query Frame = 1
Query:   37 TCKIEGHIDEKLSAGISAFSMETFLKMMVEREDEITGDVFDMLMTLGEFSEFRNMMLAHK 216
            T  +E  ++++LSA IS F+ME   ++++ ++DE++G++FD+L +LG+F EF++ M+AHK
Sbjct:   86 TAVVEKALEDRLSAKISGFTMEKLERIVLSKKDELSGEIFDLLCSLGDFMEFKDTMVAHK 145          
BLAST of mRNA_C-tenellus_contig7016.1.1 vs. uniprot
Match: UPI001C040671 (ADP-ribosylation factor-like protein 2-binding protein isoform X2 n=1 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C040671)

HSP 1 Score: 62.4 bits (150), Expect = 2.370e-10
Identity = 23/58 (39.66%), Postives = 44/58 (75.86%), Query Frame = 1
Query:   46 IEGHIDEKLSAGISAFSMETFLKMMVEREDEITGDVFDMLMTLGEFSEFRNMMLAHKA 219
            +E H++++L   IS FSM TF++ +++ +DE++GD+FD+L+T  +F  F++M L ++A
Sbjct:   80 LENHLEQQLMERISGFSMNTFIEQLMQHKDEVSGDIFDILLTFTDFMAFKDMFLEYRA 137          
BLAST of mRNA_C-tenellus_contig7016.1.1 vs. uniprot
Match: UPI001C050FB3 (ADP-ribosylation factor-like protein 2-binding protein isoform X1 n=1 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C050FB3)

HSP 1 Score: 62.4 bits (150), Expect = 2.810e-10
Identity = 23/58 (39.66%), Postives = 44/58 (75.86%), Query Frame = 1
Query:   46 IEGHIDEKLSAGISAFSMETFLKMMVEREDEITGDVFDMLMTLGEFSEFRNMMLAHKA 219
            +E H++++L   IS FSM TF++ +++ +DE++GD+FD+L+T  +F  F++M L ++A
Sbjct:   90 LENHLEQQLMERISGFSMNTFIEQLMQHKDEVSGDIFDILLTFTDFMAFKDMFLEYRA 147          
BLAST of mRNA_C-tenellus_contig7016.1.1 vs. uniprot
Match: A0A1Y2BST6_9FUNG (ADP-ribosylation factor-like protein 2-binding protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2BST6_9FUNG)

HSP 1 Score: 62.0 bits (149), Expect = 3.950e-10
Identity = 26/60 (43.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query:   37 TCKIEGHIDEKLSAGISAFSMETFLKMMVEREDEITGDVFDMLMTLGEFSEFRNMMLAHK 216
            T K+E +I++KL A I  F+M  FL ++  R +++ GDVFDM+ ++G+FS F+ MM++ K
Sbjct:   93 TAKVEAYIEKKLRAEIPEFNMNDFLDLLRSRPEQLEGDVFDMMASIGDFSAFKEMMVSFK 152          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7016.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0DTY7_9EUKA1.300e-1453.45ADP-ribosylation factor-like protein 2-binding pro... [more]
A0A6H5KLK6_9PHAE3.500e-1350.85ADP-ribosylation factor-like protein 2-binding pro... [more]
A0A7S2BYQ0_9STRA3.740e-1356.14ADP-ribosylation factor-like protein 2-binding pro... [more]
F0YLV8_AURAN9.510e-1340.00ADP-ribosylation factor-like protein 2-binding pro... [more]
D7FPD1_ECTSI7.870e-1249.15ADP-ribosylation factor-like protein 2-binding pro... [more]
A0A6V2TH31_HETAK3.230e-1150.82ADP-ribosylation factor-like protein 2-binding pro... [more]
A0A7S3GWD6_9STRA1.760e-1041.67ADP-ribosylation factor-like protein 2-binding pro... [more]
UPI001C0406712.370e-1039.66ADP-ribosylation factor-like protein 2-binding pro... [more]
UPI001C050FB32.810e-1039.66ADP-ribosylation factor-like protein 2-binding pro... [more]
A0A1Y2BST6_9FUNG3.950e-1043.33ADP-ribosylation factor-like protein 2-binding pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7016contigC-tenellus_contig7016:822..1844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog227086.JGI_V11_91575
Preferred nameARL2BP
PFAMsARL2_Bind_BART
Model size222
Max annot lvl2759|Eukaryota
KEGG koko:K16742
Hectar predicted targeting categoryother localisation
GOsGO:0001932,GO:0001934,GO:0002791,GO:0003674,GO:0003712,GO:0003713,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005759,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010817,GO:0015630,GO:0019219,GO:0019220,GO:0019222,GO:0023051,GO:0023052,GO:0023056,GO:0030234,GO:0030496,GO:0030695,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032268,GO:0032270,GO:0032507,GO:0032879,GO:0032880,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0042325,GO:0042327,GO:0042509,GO:0042531,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044429,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045185,GO:0045935,GO:0045937,GO:0046425,GO:0046427,GO:0046883,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050708,GO:0050730,GO:0050731,GO:0050789,GO:0050790,GO:0050794,GO:0050796,GO:0050896,GO:0051046,GO:0051049,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051223,GO:0051235,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051457,GO:0051641,GO:0051651,GO:0051716,GO:0060255,GO:0060589,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070727,GO:0072595,GO:0080090,GO:0090087,GO:0090276,GO:0098772,GO:0140110,GO:1902531,GO:1902533,GO:1902680,GO:1903506,GO:1903508,GO:1903530,GO:1904892,GO:1904894,GO:2001141
Exons2
Evalue2.01e-14
EggNOG OGs2A9TM@1|root,2RYJD@2759|Eukaryota
Ec32 ortholog descriptionADP-ribosylation factor-like 2-binding protein, domain
Ec32 orthologEc-15_003850.1
Descriptionmaintenance of protein location in nucleus
Cds size222
COG categoryS
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790007.691914-CDS-C-tenellus_contig7016:821..9101680790007.691914-CDS-C-tenellus_contig7016:821..910Choristocarpus tenellus KU2346CDSC-tenellus_contig7016 822..910 -
1680790007.7179472-CDS-C-tenellus_contig7016:1711..18441680790007.7179472-CDS-C-tenellus_contig7016:1711..1844Choristocarpus tenellus KU2346CDSC-tenellus_contig7016 1712..1844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7016.1.1prot_C-tenellus_contig7016.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7016 822..1844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7016.1.1

>prot_C-tenellus_contig7016.1.1 ID=prot_C-tenellus_contig7016.1.1|Name=mRNA_C-tenellus_contig7016.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=74bp
DSPHPYFLLIPDTCKIEGHIDEKLSAGISAFSMETFLKMMVEREDEITGD
VFDMLMTLGEFSEFRNMMLAHKAG
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mRNA from alignment at C-tenellus_contig7016:822..1844-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7016.1.1 ID=mRNA_C-tenellus_contig7016.1.1|Name=mRNA_C-tenellus_contig7016.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1023bp|location=Sequence derived from alignment at C-tenellus_contig7016:822..1844- (Choristocarpus tenellus KU2346)
GATTCACCCCATCCCTACTTCCTCCTTATACCTGATACTTGTAAAATAGA GGGGCATATCGATGAGAAGCTGTCCGCTGGCATTTCTGCCTTTAGTATGG AGACGTTTCTCAAGATGATGGTTGAAAGAGAAGGTGAGGTTTCGGATAGA TTTGGTACCCCTTACTCAGAAAAATAGTAGGGGGAGATGGAGATGGGGCT GTGCAGGGCCAGGTGGGGGGGCAATAGAACAATGTGGGGTCACTTCCACC TTGTGCTTTGCACTCTTTTCAAGAAAATTTGGAGGCCTTGTAATTTCAGG ATCCAGGCATCAACATTTCAAGACGTGATTGTGAAAAATCACTGTAAGTG TACCTCTTACATACAATGAACTCAGTACAAGTCATTGTTGCCCACCCTCT CTGCCCCTAGATGCCACTAAGCCTCCTACGTTGCAAGCATAGTGGGGAGT TTAAACGGTACCGTTTTGTTTGCTCTTGCTCTCCTTGACACAGTGTGCAG GTTGTTCCTATGTAGTTCCTGCACCATGTGTTACTACTCCAGGAGATAGT CACAGAATCGTTGACAATTGCAGTGCTGAATGAACTGTCGCCATTTACAT CAAGCCTCCAGCGGTGATGTTAAAGGATGCTTTGCCTTTGTTTACATGTT GCCATGGTAGTGGTGAGATGGTGTTGGATGCCTTGATTTCTGATCAGAGA CCTTTCCTAGGTGGCATCAGTCCTTTGCATCATGTTCTATTCACCAGAAA CCATGTTGTGATTTGCAAAGAAAATATCTGAAAGAGGATAGCGAGAAAGT TGGAATTTTGGTTAGGGTTAGGGTTAGGGTTAGCATTAGGAAAGATGACA AGCAACTCAAAACAAGGAGCACCGAGTGTCTGATGAGCATCTGTATTTTA CAGCCAAATCAACCCCTCCAATGCAATCAAGCAGATGAGATTACAGGCGA TGTATTTGATATGCTCATGACTCTGGGAGAATTCTCAGAGTTCAGGAACA TGATGCTGGCACACAAGGCAGGC
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Coding sequence (CDS) from alignment at C-tenellus_contig7016:822..1844-

>mRNA_C-tenellus_contig7016.1.1 ID=mRNA_C-tenellus_contig7016.1.1|Name=mRNA_C-tenellus_contig7016.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=222bp|location=Sequence derived from alignment at C-tenellus_contig7016:822..1844- (Choristocarpus tenellus KU2346)
GATTCACCCCATCCCTACTTCCTCCTTATACCTGATACTTGTAAAATAGA
GGGGCATATCGATGAGAAGCTGTCCGCTGGCATTTCTGCCTTTAGTATGG
AGACGTTTCTCAAGATGATGGTTGAAAGAGAAGATGAGATTACAGGCGAT
GTATTTGATATGCTCATGACTCTGGGAGAATTCTCAGAGTTCAGGAACAT
GATGCTGGCACACAAGGCAGGC
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