mRNA_C-tenellus_contig701.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig701.2.1
Unique NamemRNA_C-tenellus_contig701.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig701.2.1 vs. uniprot
Match: D7G6D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6D5_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 3.810e-38
Identity = 61/120 (50.83%), Postives = 86/120 (71.67%), Query Frame = 1
Query:    1 ISTEILLDVNDMFNLPYGVGDKMKEVSDLLPRARVNDAKEHFIPPVTRPKVPARHYFVFGRPIETSGVEAQDRKGCEDLYQQARSSVEAGIQYLLAARDHDPYASAPRRYLYESVMGVQV 360
            +S  + +D+ ++F+LP+GVG+KMK+ +D +PRAR  D +E+F+PP+ RPKVPARHYFVFG  I+TS V+ +DR  C+  Y+  +S V  GI  LL +R  DPY    +R+LYESVM  QV
Sbjct:    1 MSVALWMDLEEIFSLPFGVGEKMKDAADAIPRARQGDNQEYFLPPIARPKVPARHYFVFGPAIDTSLVDEKDRGTCQAAYELTKSCVREGISLLLESRKQDPYRDGAKRWLYESVMKTQV 120          
BLAST of mRNA_C-tenellus_contig701.2.1 vs. uniprot
Match: A0A7S2XNY5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XNY5_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.180e-20
Identity = 45/119 (37.82%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    4 STEILLDVNDMFNLPYGVGDKMKEVS--DLLPRARVNDAKEHFIPPVTRPKV-PARHYFVFGRPIETSGVEAQDRKGCEDLYQQARSSVEAGIQYLLAARDHDPYASAPRRYLYESVMG 351
            S  IL+D  D+  LP+G+G++    S   +  R  VN+  E F PP   PK+ PARHYFVFG+P+ T  V  +D+  C+D YQ  +  ++ G   +L AR+ DP+ +   R  +E + G
Sbjct:   58 SVNILIDAPDILKLPFGIGERAANSSANTISARFNVNNEGELFQPPFALPKLLPARHYFVFGKPMSTENVNYKDKAACDDFYQNVKGEMQRGFDDVLRAREKDPFKNTASRLRHEVLTG 176          
BLAST of mRNA_C-tenellus_contig701.2.1 vs. uniprot
Match: B8BRN2_THAPS (AB hydrolase-1 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BRN2_THAPS)

HSP 1 Score: 94.4 bits (233), Expect = 4.460e-20
Identity = 45/120 (37.50%), Postives = 76/120 (63.33%), Query Frame = 1
Query:    4 STEILLDVNDMFNLPYGVGDKMKEVSDLLPRARVN--DAKEHFIPPVTRPK-VPARHYFVFGRPIETSGVEAQDRKGCEDLYQQARSSVEAGIQYLLAARDHDPYA-SAPRRYLYESVMG 351
            S +I+LD  ++ +LP+G+GD +K  +     AR +  D +E F+PP+  PK  PARHYF+FGR  +TS ++ Q++  C+ +Y++  + + + I  LLAAR+ DP+A    +R  Y+ + G
Sbjct:  712 SVDIVLDAKELLDLPFGIGDNLKNFNANATSARYDTQDGEELFVPPLAVPKPFPARHYFLFGRAFDTSSIDPQNKDACQTMYEEIENELRSDIDALLAARERDPFALDGGKRAWYQRLFG 831          
BLAST of mRNA_C-tenellus_contig701.2.1 vs. uniprot
Match: A0A7S3Q0K0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q0K0_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.120e-19
Identity = 45/118 (38.14%), Postives = 69/118 (58.47%), Query Frame = 1
Query:    4 STEILLDVNDMFNLPYGVGDKMKEVSDLLPRARVN--DAKEHFIPPVTRPKVPARHYFVFGRPIETSGVEAQDRKGCEDLYQQARSSVEAGIQYLLAARDHDPYASAPRRYLYESVMG 351
            S  IL+D  D+ +LP+G+G++    +  +  AR +  +  E F PPV  PK+PARHYFVFG+P +T  ++ ++ + C  LY   +  +  G+  LL AR++DPY   P R   E V G
Sbjct:  615 SLNILVDSPDVLDLPFGIGERAANQTKNVMSARFDQDNTAELFQPPVIFPKIPARHYFVFGKPFDTENIDHRNAEECTKLYAGVKGELRRGLDDLLVARENDPYKDTPMRIAVEKVSG 732          
BLAST of mRNA_C-tenellus_contig701.2.1 vs. uniprot
Match: A0A7S4HRM0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HRM0_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.080e-19
Identity = 46/119 (38.66%), Postives = 70/119 (58.82%), Query Frame = 1
Query:    4 STEILLDVNDMFNLPYGVGDKMKEVSDLLPRARVN--DAKEHFIPPVTRPK-VPARHYFVFGRPIETSGVEAQDRKGCEDLYQQARSSVEAGIQYLLAARDHDPYASAPRRYLYESVMG 351
            S  IL+D  D+  LP+G+G++    S  +  AR +  +  E F PP   PK +PARHYFVFG P++T  ++  D++GCE+ Y   +S +  G   +L AR++DP+    RR  +E V G
Sbjct:  595 SVNILIDAPDILKLPFGIGERAANNSANVMSARFDGDEQSELFQPPFALPKPLPARHYFVFGTPMDTEHLDHSDKEGCENFYDNVKSEMMRGFDDILQARENDPWKDTARRIAFEQVTG 713          
BLAST of mRNA_C-tenellus_contig701.2.1 vs. uniprot
Match: A0A446MRL8_TRITD (Uncharacterized protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446MRL8_TRITD)

HSP 1 Score: 82.4 bits (202), Expect = 1.810e-16
Identity = 48/120 (40.00%), Postives = 66/120 (55.00%), Query Frame = 1
Query:   10 EILLDVNDMFNLPYGVGDKMKEVSDLLPRARVN----DAKEHFIPPVTRPKVPARHYFVFGRPIETSGVE--AQDRKGCEDLYQQARSSVEAGIQYLLAARDHDPYASAPRRYLYESVMG 351
            EI +D ND  N+PY + D +K  +  LP  R      D  +    PV  PK+P R YF+FG+PIET G++    D+K   DLY   +S V   + YL   R+ DPY S  RR LY +++G
Sbjct:  157 EIAIDYNDQKNIPY-LRDWIKSFNADLPSVRDTVIGEDGNQVLHLPVVLPKIPGRLYFLFGKPIETKGMDNLLMDKKLANDLYLHTKSEVGNLVSYLKRKREEDPYRSIMRRTLYRAILG 275          
BLAST of mRNA_C-tenellus_contig701.2.1 vs. uniprot
Match: A0A8I6W3H4_HORVV (Hydrolase_4 domain-containing protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6W3H4_HORVV)

HSP 1 Score: 83.2 bits (204), Expect = 3.570e-16
Identity = 49/120 (40.83%), Postives = 67/120 (55.83%), Query Frame = 1
Query:   10 EILLDVNDMFNLPYGVGDKMKEVSDLLPRARVN----DAKEHFIPPVTRPKVPARHYFVFGRPIETSGVE--AQDRKGCEDLYQQARSSVEAGIQYLLAARDHDPYASAPRRYLYESVMG 351
            EI+LD ND  N+P  + D +K ++D LP  R +    D       P   PKVP R YF+FG+PIET G++    D+K   +LY Q +S VE  + YL   R+ DP+ S  RR LY+   G
Sbjct:  556 EIVLDYNDQMNIPC-LRDWIKSLNDDLPSVRDSITGEDGNHALHVPAVLPKVPGRLYFLFGKPIETKGMDNLLLDKKQANELYLQTKSEVENLMSYLKRKREEDPFRSITRRTLYQVTRG 674          
BLAST of mRNA_C-tenellus_contig701.2.1 vs. uniprot
Match: UPI001F5C2A1E (phytyl ester synthase 1, chloroplastic-like n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5C2A1E)

HSP 1 Score: 82.8 bits (203), Expect = 4.840e-16
Identity = 48/120 (40.00%), Postives = 66/120 (55.00%), Query Frame = 1
Query:   10 EILLDVNDMFNLPYGVGDKMKEVSDLLPRARVN----DAKEHFIPPVTRPKVPARHYFVFGRPIETSGVE--AQDRKGCEDLYQQARSSVEAGIQYLLAARDHDPYASAPRRYLYESVMG 351
            E++LD ND  N+PY + D +K  ++ LP  R      D  +    P   PK+P R YF+FG+PIET G++   +D K   DLY   +S VE  I YL   R+ DPY S   R LY++  G
Sbjct:  521 ELVLDYNDQKNIPY-LRDGIKSFNEDLPNVRATVTGEDGNQALHVPGFLPKLPGRLYFLFGKPIETRGMDNLVRDNKQANDLYLHTKSEVENLISYLKRKREEDPYRSIVSRTLYQATWG 639          
BLAST of mRNA_C-tenellus_contig701.2.1 vs. uniprot
Match: A0A7S0RX44_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RX44_9CHLO)

HSP 1 Score: 79.7 bits (195), Expect = 4.910e-16
Identity = 44/114 (38.60%), Postives = 64/114 (56.14%), Query Frame = 1
Query:   16 LLDVNDMFNLPYGVGDKMKEVSDLLPRARVN-------DAKEHFIPPVTRPKVPARHYFVFGRPIETSGVEAQDRKGCEDLYQQARSSVEAGIQYLLAARDHDPYASAPRRYLY 336
            +LD  D+  LP  +G+ +++ +  +P+AR         D +E FI P+     P R YFVF  PI T+   A DR  C+ LY + +  V+ G+ YLLAAR+ DPYA   RR +Y
Sbjct:   89 VLDGRDLAALPI-IGESIRKRASAVPQARRGVSASTSPDLEESFIQPLITLNAPQRFYFVFRAPITTTPDMAGDRAACDALYARVKGEVQGGLDYLLAARERDPYADLGRRLVY 201          
BLAST of mRNA_C-tenellus_contig701.2.1 vs. uniprot
Match: UPI001D01FB84 (acyltransferase-like protein At1g54570, chloroplastic n=1 Tax=Triticum aestivum TaxID=4565 RepID=UPI001D01FB84)

HSP 1 Score: 82.4 bits (202), Expect = 6.610e-16
Identity = 48/120 (40.00%), Postives = 66/120 (55.00%), Query Frame = 1
Query:   10 EILLDVNDMFNLPYGVGDKMKEVSDLLPRARVN----DAKEHFIPPVTRPKVPARHYFVFGRPIETSGVE--AQDRKGCEDLYQQARSSVEAGIQYLLAARDHDPYASAPRRYLYESVMG 351
            EI +D ND  N+PY + D +K  +  LP  R      D  +    PV  PK+P R YF+FG+PIET G++    D+K   DLY   +S V   + YL   R+ DPY S  RR LY +++G
Sbjct:  519 EIAIDYNDQKNIPY-LRDWIKSFNADLPSVRDTVIGEDGNQVLHLPVVLPKIPGRLYFLFGKPIETKGMDNLLMDKKLANDLYLHTKSEVGNLVSYLKRKREEDPYRSIMRRTLYRAILG 637          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig701.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6D5_ECTSI3.810e-3850.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2XNY5_9STRA1.180e-2037.82Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
B8BRN2_THAPS4.460e-2037.50AB hydrolase-1 domain-containing protein n=1 Tax=T... [more]
A0A7S3Q0K0_9STRA1.120e-1938.14Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S4HRM0_9STRA2.080e-1938.66Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A446MRL8_TRITD1.810e-1640.00Uncharacterized protein n=1 Tax=Triticum turgidum ... [more]
A0A8I6W3H4_HORVV3.570e-1640.83Hydrolase_4 domain-containing protein n=1 Tax=Hord... [more]
UPI001F5C2A1E4.840e-1640.00phytyl ester synthase 1, chloroplastic-like n=1 Ta... [more]
A0A7S0RX44_9CHLO4.910e-1638.60Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
UPI001D01FB846.610e-1640.00acyltransferase-like protein At1g54570, chloroplas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig701contigC-tenellus_contig701:2976..3653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog227086.JGI_V11_125940
PFAMsAbhydrolase_6,DAGAT,Hydrolase_4
Model size360
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004144,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006066,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010287,GO:0016101,GO:0016411,GO:0016740,GO:0016746,GO:0016747,GO:0017144,GO:0019432,GO:0033306,GO:0034308,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046460,GO:0046463,GO:0046486,GO:0071704,GO:1901576,GO:1901615,GO:1903173
Exons2
Evalue1.2e-22
EggNOG OGsCOG0204@1|root,2QQUD@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_001460.1
Descriptionfatty alcohol metabolic process
Cds size360
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790007.0534475-CDS-C-tenellus_contig701:2975..31251680790007.0534475-CDS-C-tenellus_contig701:2975..3125Choristocarpus tenellus KU2346CDSC-tenellus_contig701 2976..3125 +
1680790007.072735-CDS-C-tenellus_contig701:3443..36531680790007.072735-CDS-C-tenellus_contig701:3443..3653Choristocarpus tenellus KU2346CDSC-tenellus_contig701 3444..3653 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig701.2.1prot_C-tenellus_contig701.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig701 2976..3653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig701.2.1

>prot_C-tenellus_contig701.2.1 ID=prot_C-tenellus_contig701.2.1|Name=mRNA_C-tenellus_contig701.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=120bp
ISTEILLDVNDMFNLPYGVGDKMKEVSDLLPRARVNDAKEHFIPPVTRPK
VPARHYFVFGRPIETSGVEAQDRKGCEDLYQQARSSVEAGIQYLLAARDH
DPYASAPRRYLYESVMGVQV
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mRNA from alignment at C-tenellus_contig701:2976..3653+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig701.2.1 ID=mRNA_C-tenellus_contig701.2.1|Name=mRNA_C-tenellus_contig701.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=678bp|location=Sequence derived from alignment at C-tenellus_contig701:2976..3653+ (Choristocarpus tenellus KU2346)
ATAAGTACGGAGATTCTGCTGGATGTAAATGACATGTTCAACCTCCCCTA TGGGGTTGGGGATAAGATGAAGGAAGTGTCAGATCTCCTTCCCCGTGCTC GTGTAAATGATGCAAAAGAACACTTCATTCCCCCAGTCACTCGCCCAAAG GTAAGGACCAATGAAATACGATATTATTATTACTGTCAACACAATGCACC TACTCAGCACTTTGAAGTAACAATACTGTTTTCAAGATGATATTTTTAAT GCACACGGTACAACCGTAGACTGGAAAAGTGAGAAGCGTGTTCTGTAGTG GTATCTACAGCAGCTCGGGAGCAGTGCACTGGGCATCCTCAAAACAGGAG ATCAAATCCAAGCATAAGAGATGGTAGTCAATGAGGCCACGCAAGTCACA AGTCACAAGTCACAAGTCAACCCTCTTATCCCCTTTCCCTAAATTTGGGA CCATTGTCATCACTTCAGGTTCCTGCTCGTCACTACTTTGTGTTTGGGAG ACCAATCGAGACCTCAGGAGTTGAAGCACAAGATCGAAAGGGATGTGAGG ACCTCTATCAACAAGCCCGTTCTTCAGTTGAAGCAGGCATACAATACCTT CTAGCTGCACGAGATCACGACCCCTATGCCAGTGCACCCAGGAGATACCT CTACGAATCAGTCATGGGAGTGCAGGTT
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Coding sequence (CDS) from alignment at C-tenellus_contig701:2976..3653+

>mRNA_C-tenellus_contig701.2.1 ID=mRNA_C-tenellus_contig701.2.1|Name=mRNA_C-tenellus_contig701.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=360bp|location=Sequence derived from alignment at C-tenellus_contig701:2976..3653+ (Choristocarpus tenellus KU2346)
ATAAGTACGGAGATTCTGCTGGATGTAAATGACATGTTCAACCTCCCCTA
TGGGGTTGGGGATAAGATGAAGGAAGTGTCAGATCTCCTTCCCCGTGCTC
GTGTAAATGATGCAAAAGAACACTTCATTCCCCCAGTCACTCGCCCAAAG
GTTCCTGCTCGTCACTACTTTGTGTTTGGGAGACCAATCGAGACCTCAGG
AGTTGAAGCACAAGATCGAAAGGGATGTGAGGACCTCTATCAACAAGCCC
GTTCTTCAGTTGAAGCAGGCATACAATACCTTCTAGCTGCACGAGATCAC
GACCCCTATGCCAGTGCACCCAGGAGATACCTCTACGAATCAGTCATGGG
AGTGCAGGTT
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