mRNA_C-tenellus_contig7003.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7003.1.1
Unique NamemRNA_C-tenellus_contig7003.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7003.1.1 vs. uniprot
Match: A0A355VS74_9PROT (Uncharacterized protein n=1 Tax=Holosporales bacterium TaxID=2053559 RepID=A0A355VS74_9PROT)

HSP 1 Score: 71.6 bits (174), Expect = 1.740e-14
Identity = 39/58 (67.24%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:   22 KTERQHSATYQQNKGYHSWRNKNKYGRRESVENTF-RFKNSFGSKFLSRNEDNPNGLL 192
            KTERQ   TY+Q KGYH WR KN YGRRE VENTF RFK SFG +FLSR+E+N    L
Sbjct:   48 KTERQKEVTYKQEKGYHPWRVKNNYGRRERVENTFYRFKTSFGRQFLSRDENNRENEL 105
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BLAST of mRNA_C-tenellus_contig7003.1.1 vs. uniprot
Match: A0A0C1MQF7_9RICK (DDE_Tnp_1 domain-containing protein (Fragment) n=1 Tax=Candidatus Jidaibacter acanthamoeba TaxID=86105 RepID=A0A0C1MQF7_9RICK)

HSP 1 Score: 55.1 bits (131), Expect = 4.490e-8
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:   31 RQHSATYQQNKGYHSWRNKNKYGRRESVENT-FRFKNSFGSKFLSRNEDN 177
            R ++  Y + KGYH+WRNKNKYGRRE VENT +R+K   G+K  SR  DN
Sbjct:   44 RSNTINYIKEKGYHAWRNKNKYGRREIVENTIYRYKTIIGAKLKSRKWDN 93
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BLAST of mRNA_C-tenellus_contig7003.1.1 vs. uniprot
Match: A0A839D0P5_9PROT (IS5 family transposase n=1 Tax=Holosporaceae bacterium 'Namur' TaxID=2759495 RepID=A0A839D0P5_9PROT)

HSP 1 Score: 55.8 bits (133), Expect = 1.240e-7
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   25 TERQHSATYQQNKGYHSWRNKNKYGRRESVENTF-RFKNSFGSKFLSRNEDN 177
            T+R+++  Y + KGY +WRNKNKYGRRE VENTF R+K+  G+K  SR  DN
Sbjct:  169 TQRRNTIVYIREKGYDAWRNKNKYGRREIVENTFYRYKSIIGAKLRSRKWDN 220
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BLAST of mRNA_C-tenellus_contig7003.1.1 vs. uniprot
Match: A0A0C1QQP1_9RICK (DDE_Tnp_1 domain-containing protein (Fragment) n=1 Tax=Candidatus Jidaibacter acanthamoeba TaxID=86105 RepID=A0A0C1QQP1_9RICK)

HSP 1 Score: 53.1 bits (126), Expect = 1.320e-7
Identity = 33/60 (55.00%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:    1 ATESHDSKTERQHSATYQQNKGYHSWRNKNKYGRRESVENTF-RFKNSFGSKFLSRNEDN 177
            ATE H S T       Y + KGYH+W NKNKYGRRE VENT  R+K+  G+K  SR  DN
Sbjct:   35 ATEKHRSDT-----INYIREKGYHAWYNKNKYGRREIVENTICRYKSIIGAKLRSRKWDN 89
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BLAST of mRNA_C-tenellus_contig7003.1.1 vs. uniprot
Match: A0A839D2E1_9PROT (IS5 family transposase n=2 Tax=Holosporaceae bacterium 'Namur' TaxID=2759495 RepID=A0A839D2E1_9PROT)

HSP 1 Score: 52.8 bits (125), Expect = 2.040e-6
Identity = 33/60 (55.00%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:    1 ATESHDSKTERQHSATYQQNKGYHSWRNKNKYGRRESVENTF-RFKNSFGSKFLSRNEDN 177
            ATE H S T       Y + KGYH+W NKNKYGRRE VENT  R+K+  G+K  SR  DN
Sbjct:  236 ATEKHRSDT-----INYIREKGYHAWCNKNKYGRREIVENTICRYKSIIGAKLRSRKWDN 290
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BLAST of mRNA_C-tenellus_contig7003.1.1 vs. uniprot
Match: UPI001EF9DCFA (transposase n=1 Tax=Candidatus Jidaibacter acanthamoeba TaxID=86105 RepID=UPI001EF9DCFA)

HSP 1 Score: 48.1 bits (113), Expect = 2.100e-5
Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   49 YQQNKGYHSWRNKNKYGRRESVENT-FRFKNSFGSKFLSRNEDN 177
            Y + KGYH  RNKNKYGRRE VENT +R+K+  G+K  SR  DN
Sbjct:   47 YIKEKGYHVERNKNKYGRREIVENTIYRYKSIIGAKLRSRKWDN 90
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BLAST of mRNA_C-tenellus_contig7003.1.1 vs. uniprot
Match: A0A0C1QL66_9RICK (DDE_Tnp_1 domain-containing protein n=3 Tax=Candidatus Jidaibacter acanthamoeba TaxID=86105 RepID=A0A0C1QL66_9RICK)

HSP 1 Score: 48.1 bits (113), Expect = 4.550e-5
Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   49 YQQNKGYHSWRNKNKYGRRESVENT-FRFKNSFGSKFLSRNEDN 177
            Y + KGYH  RNKNKYGRRE VENT +R+K+  G+K  SR  DN
Sbjct:   98 YIKEKGYHVERNKNKYGRREIVENTIYRYKSIIGAKLRSRKWDN 141
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BLAST of mRNA_C-tenellus_contig7003.1.1 vs. uniprot
Match: A0A0C1QYV4_9RICK (DDE_Tnp_1 domain-containing protein n=1 Tax=Candidatus Jidaibacter acanthamoeba TaxID=86105 RepID=A0A0C1QYV4_9RICK)

HSP 1 Score: 47.8 bits (112), Expect = 5.770e-5
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   49 YQQNKGYHSWRNKNKYGRRESVENT-FRFKNSFGSKFLSRNEDN 177
            Y + KGYH  RNKNKYGRRE +ENT +R+K+  G+K  SR  DN
Sbjct:   90 YIKEKGYHVERNKNKYGRREIIENTIYRYKSIIGAKLRSRKWDN 133
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7003.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A355VS74_9PROT1.740e-1467.24Uncharacterized protein n=1 Tax=Holosporales bacte... [more]
A0A0C1MQF7_9RICK4.490e-858.00DDE_Tnp_1 domain-containing protein (Fragment) n=1... [more]
A0A839D0P5_9PROT1.240e-757.69IS5 family transposase n=1 Tax=Holosporaceae bacte... [more]
A0A0C1QQP1_9RICK1.320e-755.00DDE_Tnp_1 domain-containing protein (Fragment) n=1... [more]
A0A839D2E1_9PROT2.040e-655.00IS5 family transposase n=2 Tax=Holosporaceae bacte... [more]
UPI001EF9DCFA2.100e-561.36transposase n=1 Tax=Candidatus Jidaibacter acantha... [more]
A0A0C1QL66_9RICK4.550e-561.36DDE_Tnp_1 domain-containing protein n=3 Tax=Candid... [more]
A0A0C1QYV4_9RICK5.770e-559.09DDE_Tnp_1 domain-containing protein n=1 Tax=Candid... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7003contigC-tenellus_contig7003:1138..1332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog86106.I862_03010
PFAMsDDE_Tnp_1,DDE_Tnp_1_5
Model size195
Max annot lvl766|Rickettsiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.16e-06
EggNOG OGsCOG3039@1|root,COG3039@2|Bacteria,1MXTN@1224|Proteobacteria,2TYT4@28211|Alphaproteobacteria,47EXJ@766|Rickettsiales
DescriptionTransposase DDE domain
Cds size195
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790006.6915405-CDS-C-tenellus_contig7003:1137..13321680790006.6915405-CDS-C-tenellus_contig7003:1137..1332Choristocarpus tenellus KU2346CDSC-tenellus_contig7003 1138..1332 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7003.1.1prot_C-tenellus_contig7003.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7003 1138..1332 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7003.1.1

>prot_C-tenellus_contig7003.1.1 ID=prot_C-tenellus_contig7003.1.1|Name=mRNA_C-tenellus_contig7003.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=65bp
ATESHDSKTERQHSATYQQNKGYHSWRNKNKYGRRESVENTFRFKNSFGS
KFLSRNEDNPNGLL*
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mRNA from alignment at C-tenellus_contig7003:1138..1332+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7003.1.1 ID=mRNA_C-tenellus_contig7003.1.1|Name=mRNA_C-tenellus_contig7003.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=195bp|location=Sequence derived from alignment at C-tenellus_contig7003:1138..1332+ (Choristocarpus tenellus KU2346)
GCCACGGAATCGCACGATTCAAAAACCGAGCGTCAGCATAGTGCTACGTA
TCAACAAAACAAAGGATATCACTCATGGAGGAATAAGAATAAATATGGTA
GAAGAGAATCTGTAGAAAACACCTTCAGATTTAAAAATTCTTTTGGTAGT
AAATTTCTATCGAGGAATGAAGATAACCCTAACGGACTTCTGTAA
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Coding sequence (CDS) from alignment at C-tenellus_contig7003:1138..1332+

>mRNA_C-tenellus_contig7003.1.1 ID=mRNA_C-tenellus_contig7003.1.1|Name=mRNA_C-tenellus_contig7003.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=195bp|location=Sequence derived from alignment at C-tenellus_contig7003:1138..1332+ (Choristocarpus tenellus KU2346)
GCCACGGAATCGCACGATTCAAAAACCGAGCGTCAGCATAGTGCTACGTA
TCAACAAAACAAAGGATATCACTCATGGAGGAATAAGAATAAATATGGTA
GAAGAGAATCTGTAGAAAACACCTTCAGATTTAAAAATTCTTTTGGTAGT
AAATTTCTATCGAGGAATGAAGATAACCCTAACGGACTTCTGTAA
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