mRNA_C-tenellus_contig7002.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7002.2.1
Unique NamemRNA_C-tenellus_contig7002.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7002.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7002contigC-tenellus_contig7002:1371..4583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2270
Hectar predicted targeting categorysignal peptide
Exons3
Cds size1932
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790006.6331248-CDS-C-tenellus_contig7002:1370..23661680790006.6331248-CDS-C-tenellus_contig7002:1370..2366Choristocarpus tenellus KU2346CDSC-tenellus_contig7002 1371..2366 -
1680790006.6441822-CDS-C-tenellus_contig7002:2844..36411680790006.6441822-CDS-C-tenellus_contig7002:2844..3641Choristocarpus tenellus KU2346CDSC-tenellus_contig7002 2845..3641 -
1680790006.6533558-CDS-C-tenellus_contig7002:4107..42461680790006.6533558-CDS-C-tenellus_contig7002:4107..4246Choristocarpus tenellus KU2346CDSC-tenellus_contig7002 4108..4246 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790006.6635375-UTR-C-tenellus_contig7002:4246..45831680790006.6635375-UTR-C-tenellus_contig7002:4246..4583Choristocarpus tenellus KU2346UTRC-tenellus_contig7002 4247..4583 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7002.2.1prot_C-tenellus_contig7002.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7002 1371..4246 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7002.2.1

>prot_C-tenellus_contig7002.2.1 ID=prot_C-tenellus_contig7002.2.1|Name=mRNA_C-tenellus_contig7002.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=644bp
MHKGWVLFLRLLLVSCLPVPSIAQEDVDNESKGGVDMVIVIGAATAGGVL
VLALACACCMYWYRRPPRRHAIHQDVMGDGIDGSALDGQTPSGVIADVEQ
GMWRANESTGSSAATAVLKGTPMGSGEMEDKQSNGSNARRSRENRKSFNI
TEEFKAEQPIGHRRPASAGAHVVSGVVRNGDSHGHFVTASPPSRRIRGNT
MPTPDTGDAFRGNDKNIFSATPPPLPLIVRRALKEVSSSGGVGTPSHRRG
VMGGTSSQQRGASSTPPQNLRRSASVQDMVEYKRSMGSSPGDFGRNSSNR
VVGRNFYDRSGLGQGRRTKVTRDQQISKVSSGQTLPLATASPRLPSRSPL
RAPRKTTGFSDGEDSGGGEQEQQRFRRTNSVPSDMGLGRRSDQPPPPYEA
SLSPAGFTALVADPKAAEALNRGSARIHPVPREVALSLPFRRTKSMDSDL
PTYDRAVQTVEKARARANAAGVAAATAMRAAERATAAAVAAAKAAEAAEA
AAAEEEARAEQAAAAAATGAPMWRWQGRGDEAKAPGRSGGELQIPTPSER
SSRAQSAGVAMGERLGKVGVAVAAGGDEDVKGVQVLATETRARSTWDMSL
DLTDGRFGAGEGGRVGMETGVDGSKSQRVGDGNSQVRFLREAHN
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mRNA from alignment at C-tenellus_contig7002:1371..4583-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7002.2.1 ID=mRNA_C-tenellus_contig7002.2.1|Name=mRNA_C-tenellus_contig7002.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3213bp|location=Sequence derived from alignment at C-tenellus_contig7002:1371..4583- (Choristocarpus tenellus KU2346)
CAGTTCTACATTGACAGAGATGGCAGGTTGGTGTTAACCTTCGAATTTTG
TACATGTGTAATTGGGAGTATGTTCTCAATGAAAATATATCTTCCTTTTT
CCAAGCGTCATGCCAAGGCCATGTTGGCTGATTTGAAACATCTTTCGTGA
AGGGAAGAACGAGAAATCTTGTTTTAGCTACTACAGAACGAACTCAGTCG
TAGGCATGTACATGGCCATAACTTTTGTATATCTTGCTAAAATCTGATAA
AATATATAGTGCACGAAAGTTGAGGTAGAGGTAACCCCAGACCCTGACTT
CTAACTCGATGTTGGCATCCTGACACCCATCTCAGTGATGCACAAGGGAT
GGGTGTTATTTCTTCGATTGCTACTTGTGTCGTGCTTGCCCGTCCCCAGC
ATTGCTCAGGAGGACGTGGACAACGAATCGAAAGGGGGAGTTGACATGGT
CATTGTTATTGGGGCGGCAACTGCTGGTGGGTGGAAATAAATGCCTCCTG
TACTATATGTTTCCTGTTGTTGCTTGGGGTGAATTGGGGCAGAGCTCATC
GCACAAAACCTTTGTGAGACCATGGTGTAAGACAAGCCCTCCTGGAAGTC
ATGAACACTCTGTCATGTGTATGTCTGTGTTGTGTAGCAAACGTGATGAT
ACTACCTCCACCGTACTGAAGGGAGGGAGCACCTGTTTGTTCTGAGACGT
AAGTGTGTGTCAAAATATCAACCCCCTCTTTTGGTATTTCTTCCGATTTT
TTCATGCCCCTATCCCTGGTAAGGTACTGCAGATCGTGGGAAATTTTAGC
AGCAGGCAAATCCTCTTCTCAGTCTCCTCTGTTTCAGATTTTGGAGACTA
GATGATGTTTGATATGCCAAGCAACACGCAAATGTGACTCACTTTTTCCA
TATCTTGCTTCTGCTTTTCCGTATTGATATTGTTTTGCCCAGGCGGAGTC
TTGGTGTTGGCTCTTGCCTGTGCCTGTTGTATGTACTGGTACCGGCGCCC
CCCTCGTAGGCACGCCATTCACCAGGATGTGATGGGAGATGGTATCGATG
GTAGCGCTCTTGATGGCCAAACCCCCTCAGGTGTGATTGCAGATGTGGAA
CAGGGAATGTGGAGGGCCAATGAAAGTACTGGCTCATCTGCTGCCACTGC
AGTGCTCAAGGGAACCCCAATGGGTAGTGGTGAGATGGAAGACAAGCAGT
CCAATGGAAGCAATGCCAGACGCTCTAGAGAAAATCGTAAGAGTTTCAAT
ATCACAGAGGAGTTCAAAGCAGAACAGCCAATCGGACACAGGAGACCTGC
CTCAGCAGGGGCTCATGTGGTCAGCGGTGTTGTGAGGAACGGAGATTCCC
ATGGTCACTTTGTGACGGCCTCTCCACCCTCAAGAAGGATTCGTGGCAAT
ACCATGCCCACTCCTGATACAGGGGATGCATTCAGAGGCAACGACAAGAA
TATTTTCAGTGCCACTCCACCCCCCCTTCCACTTATTGTACGCCGTGCTC
TCAAGGAAGTCTCGTCATCTGGAGGAGTGGGAACCCCTTCCCATCGCCGG
GGGGTTATGGGTGGGACAAGTTCACAACAGAGAGGAGCATCATCTACCCC
CCCCCAGAACCTGAGGAGGTCTGCTTCGGTTCAGGACATGGTGGAGTACA
AACGATCTATGGGCTCAAGCCCTGGAGACTTTGGACGTAACAGTTCAAAC
AGAGTTGTTGGACGGAACTTCTATGATCGAAGTGGCCTGGTCAGTTTTTT
GTTGCTGAACTTTTCAATAGTGGATTTCTTTGATTTTTTAAATTTTAGTT
CCCTATTGATGGATGGTGGAAGGCTTGTTTGGAAATTGTCCTTTGCACAA
TCATGACTCTTGCTTTTTGTGCATGCACATGTTTCTCAATGAATCATGGA
ACTACCCCTCCCCCCTTCCTGCAGTTGAGGGTGTGGCCCAACTTTGTCAT
GCGCCCACCATACCAAATATATACTACCGAATCATGACTTGAATTGGCCT
TGGAGCTCTCCACCTTAACCCCCTTTCTTGACATGTCACCCAACTTTGAG
AAATAACCCCTCTCACCCTATTCTTCTGGTTGGCAGTTCGCTGAGCATTT
TTTTTTTGGTGTGAGCATACTTTGTTGTTGACAGGTACACCTTGAATATA
ATTTGTCTGATGTGCGACCACCACTGGACTGACAAATTGCCGAATTAATT
TATCTTTCTTTTTGCAGGGGCAGGGGCGGAGAACGAAGGTGACCAGAGAC
CAACAGATCTCCAAAGTCAGTAGTGGGCAGACGCTTCCCCTTGCTACAGC
CTCACCGCGGTTGCCCTCACGTTCCCCCCTCAGAGCCCCAAGAAAGACCA
CAGGTTTTTCAGATGGGGAGGACAGTGGGGGGGGTGAGCAGGAACAACAG
CGTTTTCGCAGGACAAATTCTGTTCCTTCAGACATGGGCTTGGGGCGGAG
GTCTGACCAGCCTCCACCGCCCTATGAGGCTTCATTATCCCCAGCAGGCT
TTACTGCATTGGTGGCAGATCCGAAGGCAGCAGAAGCATTGAATCGTGGG
TCAGCTCGTATTCATCCAGTCCCTCGAGAGGTTGCATTGTCTTTGCCGTT
CCGCAGGACCAAGTCCATGGACTCGGATTTGCCCACGTATGATCGTGCTG
TACAGACGGTGGAGAAGGCGAGGGCAAGGGCAAATGCTGCAGGAGTGGCA
GCAGCCACAGCCATGCGAGCAGCGGAGCGTGCAACAGCGGCAGCAGTTGC
TGCTGCCAAGGCAGCAGAGGCAGCAGAGGCGGCAGCTGCGGAGGAGGAGG
CAAGGGCAGAGCAGGCAGCAGCTGCAGCGGCAACAGGGGCACCCATGTGG
AGGTGGCAGGGAAGAGGTGATGAGGCAAAAGCTCCTGGCAGGTCAGGGGG
GGAGTTGCAAATACCAACACCTTCAGAGCGAAGTTCTAGGGCTCAGTCTG
CTGGGGTTGCAATGGGAGAAAGGCTAGGCAAGGTTGGAGTAGCGGTTGCA
GCAGGTGGAGATGAGGATGTGAAAGGAGTTCAGGTTTTAGCCACAGAGAC
AAGAGCGAGATCAACATGGGATATGTCATTGGATCTCACGGATGGGAGAT
TTGGTGCTGGGGAGGGAGGAAGAGTTGGCATGGAGACAGGTGTGGATGGT
TCCAAGTCGCAAAGAGTAGGGGATGGTAATAGTCAGGTACGATTTTTACG
TGAAGCTCACAAT
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Coding sequence (CDS) from alignment at C-tenellus_contig7002:1371..4583-

>mRNA_C-tenellus_contig7002.2.1 ID=mRNA_C-tenellus_contig7002.2.1|Name=mRNA_C-tenellus_contig7002.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1932bp|location=Sequence derived from alignment at C-tenellus_contig7002:1371..4583- (Choristocarpus tenellus KU2346)
ATGCACAAGGGATGGGTGTTATTTCTTCGATTGCTACTTGTGTCGTGCTT
GCCCGTCCCCAGCATTGCTCAGGAGGACGTGGACAACGAATCGAAAGGGG
GAGTTGACATGGTCATTGTTATTGGGGCGGCAACTGCTGGCGGAGTCTTG
GTGTTGGCTCTTGCCTGTGCCTGTTGTATGTACTGGTACCGGCGCCCCCC
TCGTAGGCACGCCATTCACCAGGATGTGATGGGAGATGGTATCGATGGTA
GCGCTCTTGATGGCCAAACCCCCTCAGGTGTGATTGCAGATGTGGAACAG
GGAATGTGGAGGGCCAATGAAAGTACTGGCTCATCTGCTGCCACTGCAGT
GCTCAAGGGAACCCCAATGGGTAGTGGTGAGATGGAAGACAAGCAGTCCA
ATGGAAGCAATGCCAGACGCTCTAGAGAAAATCGTAAGAGTTTCAATATC
ACAGAGGAGTTCAAAGCAGAACAGCCAATCGGACACAGGAGACCTGCCTC
AGCAGGGGCTCATGTGGTCAGCGGTGTTGTGAGGAACGGAGATTCCCATG
GTCACTTTGTGACGGCCTCTCCACCCTCAAGAAGGATTCGTGGCAATACC
ATGCCCACTCCTGATACAGGGGATGCATTCAGAGGCAACGACAAGAATAT
TTTCAGTGCCACTCCACCCCCCCTTCCACTTATTGTACGCCGTGCTCTCA
AGGAAGTCTCGTCATCTGGAGGAGTGGGAACCCCTTCCCATCGCCGGGGG
GTTATGGGTGGGACAAGTTCACAACAGAGAGGAGCATCATCTACCCCCCC
CCAGAACCTGAGGAGGTCTGCTTCGGTTCAGGACATGGTGGAGTACAAAC
GATCTATGGGCTCAAGCCCTGGAGACTTTGGACGTAACAGTTCAAACAGA
GTTGTTGGACGGAACTTCTATGATCGAAGTGGCCTGGGGCAGGGGCGGAG
AACGAAGGTGACCAGAGACCAACAGATCTCCAAAGTCAGTAGTGGGCAGA
CGCTTCCCCTTGCTACAGCCTCACCGCGGTTGCCCTCACGTTCCCCCCTC
AGAGCCCCAAGAAAGACCACAGGTTTTTCAGATGGGGAGGACAGTGGGGG
GGGTGAGCAGGAACAACAGCGTTTTCGCAGGACAAATTCTGTTCCTTCAG
ACATGGGCTTGGGGCGGAGGTCTGACCAGCCTCCACCGCCCTATGAGGCT
TCATTATCCCCAGCAGGCTTTACTGCATTGGTGGCAGATCCGAAGGCAGC
AGAAGCATTGAATCGTGGGTCAGCTCGTATTCATCCAGTCCCTCGAGAGG
TTGCATTGTCTTTGCCGTTCCGCAGGACCAAGTCCATGGACTCGGATTTG
CCCACGTATGATCGTGCTGTACAGACGGTGGAGAAGGCGAGGGCAAGGGC
AAATGCTGCAGGAGTGGCAGCAGCCACAGCCATGCGAGCAGCGGAGCGTG
CAACAGCGGCAGCAGTTGCTGCTGCCAAGGCAGCAGAGGCAGCAGAGGCG
GCAGCTGCGGAGGAGGAGGCAAGGGCAGAGCAGGCAGCAGCTGCAGCGGC
AACAGGGGCACCCATGTGGAGGTGGCAGGGAAGAGGTGATGAGGCAAAAG
CTCCTGGCAGGTCAGGGGGGGAGTTGCAAATACCAACACCTTCAGAGCGA
AGTTCTAGGGCTCAGTCTGCTGGGGTTGCAATGGGAGAAAGGCTAGGCAA
GGTTGGAGTAGCGGTTGCAGCAGGTGGAGATGAGGATGTGAAAGGAGTTC
AGGTTTTAGCCACAGAGACAAGAGCGAGATCAACATGGGATATGTCATTG
GATCTCACGGATGGGAGATTTGGTGCTGGGGAGGGAGGAAGAGTTGGCAT
GGAGACAGGTGTGGATGGTTCCAAGTCGCAAAGAGTAGGGGATGGTAATA
GTCAGGTACGATTTTTACGTGAAGCTCACAAT
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