mRNA_C-tenellus_contig6997.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6997.2.1
Unique NamemRNA_C-tenellus_contig6997.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig6997.2.1 vs. uniprot
Match: A0A2K3M0R7_TRIPR (Mitotic checkpoint protein BUB3 n=2 Tax=Trifolium TaxID=3898 RepID=A0A2K3M0R7_TRIPR)

HSP 1 Score: 112 bits (280), Expect = 5.410e-30
Identity = 53/104 (50.96%), Postives = 67/104 (64.42%), Query Frame = 1 
Query:    4 LGDPPTDGVSSVCFAPHGDLLLASSWDSTLRLYDARQNVPKKVFAGRGALLDCCFQSMASGFCGGLDKTVKMIDLETGTERALGRHDRAVRCVEYDMTSGTLLT 315
            L +PP+DG+S++ F+ H D LL SSWD T+RLYDA  NV +  F   G +LDCCF   +SGF    D TV+ +   TG E  LG+HD  VRCVEY   +G LLT
Sbjct:   12 LANPPSDGISNIRFSNHSDNLLVSSWDKTVRLYDATANVLRGEFLHGGPVLDCCFHDDSSGFSASADNTVRRLVFATGKEDILGKHDAPVRCVEYSYAAGFLLT 115
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BLAST of mRNA_C-tenellus_contig6997.2.1 vs. uniprot
Match: A0A4Y7K1Y8_PAPSO (Uncharacterized protein n=3 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7K1Y8_PAPSO)

HSP 1 Score: 118 bits (295), Expect = 6.590e-30
Identity = 55/104 (52.88%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:    4 LGDPPTDGVSSVCFAPHGDLLLASSWDSTLRLYDARQNVPKKVFAGRGALLDCCFQSMASGFCGGLDKTVKMIDLETGTERALGRHDRAVRCVEYDMTSGTLLT 315
            L DPP+DG++++ F+ H D LL SSWD ++RLYDA +NV + VF    A+LDCCF   +SGF  GLD TV+  D  +G E  LGRHD  VRCVEY  ++G L+T
Sbjct:   14 LTDPPSDGITNLRFSNHSDHLLVSSWDKSVRLYDAGENVLRGVFNHGSAILDCCFHDDSSGFTAGLDHTVRRDDFSSGKEDILGRHDAPVRCVEYSYSAGQLIT 117
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BLAST of mRNA_C-tenellus_contig6997.2.1 vs. uniprot
Match: Q10IP1_ORYSJ (Mitotic checkpoint protein BUB3, putative, expressed n=3 Tax=Poaceae TaxID=4479 RepID=Q10IP1_ORYSJ)

HSP 1 Score: 114 bits (284), Expect = 4.320e-29
Identity = 54/104 (51.92%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:    4 LGDPPTDGVSSVCFAPHGDLLLASSWDSTLRLYDARQNVPKKVFAGRGALLDCCFQSMASGFCGGLDKTVKMIDLETGTERALGRHDRAVRCVEYDMTSGTLLT 315
            L +PPTDG+S++ F+ H D LL SSWD T+RLYDA  NV K  F   GA+LDCCF   +SGF  G D TV+ +   +  E  LGRHD  VRCVEY   +G ++T
Sbjct:   17 LANPPTDGISNLRFSNHSDHLLVSSWDKTVRLYDADANVLKGEFVHAGAVLDCCFHDDSSGFSAGADHTVRRLVFGSAKEDLLGRHDAPVRCVEYSYAAGQVIT 120
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BLAST of mRNA_C-tenellus_contig6997.2.1 vs. uniprot
Match: A0A8J5SBI1_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5SBI1_ZIZPA)

HSP 1 Score: 109 bits (272), Expect = 1.060e-28
Identity = 52/104 (50.00%), Postives = 66/104 (63.46%), Query Frame = 1 
Query:    4 LGDPPTDGVSSVCFAPHGDLLLASSWDSTLRLYDARQNVPKKVFAGRGALLDCCFQSMASGFCGGLDKTVKMIDLETGTERALGRHDRAVRCVEYDMTSGTLLT 315
            L  PPTDG+S++ F+ H D LL SSWD T+RLYDA  NV K  F   GA+LDCCF   +SGF  G D TV+ +   +  E  LG+HD  V CVEY   +G ++T
Sbjct:   16 LAYPPTDGISNLRFSNHSDHLLVSSWDKTVRLYDADANVLKGEFVHPGAVLDCCFHDDSSGFSAGADHTVRRLVFSSSKEDVLGQHDAPVSCVEYSYAAGQVIT 119
[Close]
BLAST of mRNA_C-tenellus_contig6997.2.1 vs. uniprot
Match: M8B3S1_TRIUA (Mitotic checkpoint protein BUB3 n=5 Tax=Triticinae TaxID=1648030 RepID=M8B3S1_TRIUA)

HSP 1 Score: 112 bits (280), Expect = 1.460e-28
Identity = 52/104 (50.00%), Postives = 67/104 (64.42%), Query Frame = 1 
Query:    4 LGDPPTDGVSSVCFAPHGDLLLASSWDSTLRLYDARQNVPKKVFAGRGALLDCCFQSMASGFCGGLDKTVKMIDLETGTERALGRHDRAVRCVEYDMTSGTLLT 315
            L  PP+DG+S++ F+ H D LL SSWD T+RLYDA  N+ K  FA  G +LDCCF   +SGF  G D TV+ +   +  E  LGRHD  VRCVEY   +G ++T
Sbjct:   18 LATPPSDGISNLRFSNHSDHLLVSSWDKTVRLYDAEANLLKGEFAHPGPVLDCCFHDDSSGFSAGADHTVRRLSFTSSKEDVLGRHDAPVRCVEYSYAAGQVIT 121
[Close]
BLAST of mRNA_C-tenellus_contig6997.2.1 vs. uniprot
Match: B8B805_ORYSI (Uncharacterized protein n=1 Tax=Oryza sativa subsp. indica TaxID=39946 RepID=B8B805_ORYSI)

HSP 1 Score: 112 bits (280), Expect = 2.230e-28
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:    4 LGDPPTDGVSSVCFAPHGDLLLASSWDSTLRLYDARQNVPKKVFAGRGALLDCCFQSMASGFCGGLDKTVKMIDLETGTERALGRHDRAVRCVEYDMTSGTLLT 315
            L +PP+DGVSS+ F+ H D LL SSWD T+RLYDA  NVP+ VF    ++L CCF   +SGF    D TV+ +   +G    LGRHD AV CVEY  ++G ++T
Sbjct:   28 LREPPSDGVSSLRFSKHSDRLLVSSWDKTVRLYDAEANVPRGVFMHAASVLGCCFHDDSSGFSASADNTVRRLAFSSGGNYFLGRHDAAVSCVEYSYSTGQVIT 131
[Close]
BLAST of mRNA_C-tenellus_contig6997.2.1 vs. uniprot
Match: A0A175YDN8_DAUCS (Uncharacterized protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A175YDN8_DAUCS)

HSP 1 Score: 114 bits (284), Expect = 2.670e-28
Identity = 54/104 (51.92%), Postives = 67/104 (64.42%), Query Frame = 1 
Query:    4 LGDPPTDGVSSVCFAPHGDLLLASSWDSTLRLYDARQNVPKKVFAGRGALLDCCFQSMASGFCGGLDKTVKMIDLETGTERALGRHDRAVRCVEYDMTSGTLLT 315
            L DPP DG+SS+ F+ H D LL SSWD T+RLYDAR +V +  F   GA+LDCCFQ    GF GG D TV+ +      E  LG+HD  VRCVEY   +G ++T
Sbjct:   12 LKDPPADGISSLTFSSHSDNLLVSSWDKTVRLYDARSDVLRGEFRHGGAVLDCCFQDDFVGFSGGADHTVRRLVFNNEKEDVLGKHDSPVRCVEYSNATGQVIT 115
[Close]
BLAST of mRNA_C-tenellus_contig6997.2.1 vs. uniprot
Match: A0A3B6IVH0_WHEAT (Uncharacterized protein n=20 Tax=Poaceae TaxID=4479 RepID=A0A3B6IVH0_WHEAT)

HSP 1 Score: 113 bits (282), Expect = 2.930e-28
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:    4 LGDPPTDGVSSVCFAPHGDLLLASSWDSTLRLYDARQNVPKKVFAGRGALLDCCFQSMASGFCGGLDKTVKMIDLETGTERALGRHDRAVRCVEYDMTSGTLLT 315
            L +PP+DG+S++ F+ H D LL SSWD T+RLYDA  N+ K  FA  G +LDCCF   +SGF  G D TV+ +   +  E  LGRHD  VRCVEY   +G ++T
Sbjct:   18 LANPPSDGISNLRFSNHSDHLLVSSWDKTVRLYDAEANLLKGEFAHPGPVLDCCFHDDSSGFSAGADHTVRRLSFTSSKEDVLGRHDAPVRCVEYSYAAGQVIT 121
[Close]
BLAST of mRNA_C-tenellus_contig6997.2.1 vs. uniprot
Match: A0A8J5WWH9_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5WWH9_ZIZPA)

HSP 1 Score: 112 bits (281), Expect = 4.040e-28
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:    4 LGDPPTDGVSSVCFAPHGDLLLASSWDSTLRLYDARQNVPKKVFAGRGALLDCCFQSMASGFCGGLDKTVKMIDLETGTERALGRHDRAVRCVEYDMTSGTLLT 315
            L +PP+DG+S++ F+ H D LL SSWD T+RLYDA  NV K  F   GA+LDCCF   +SGF  G D TV+ +   +  E  LGRHD  VRC+EY   +G ++T
Sbjct:   17 LANPPSDGISNLRFSNHSDHLLVSSWDKTVRLYDADANVLKGEFVHPGAVLDCCFHDDSSGFSAGADHTVRRLVFSSAKEDVLGRHDAPVRCIEYSYAAGQVIT 120
[Close]
BLAST of mRNA_C-tenellus_contig6997.2.1 vs. uniprot
Match: A0A453IMK5_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453IMK5_AEGTS)

HSP 1 Score: 110 bits (275), Expect = 4.310e-28
Identity = 51/101 (50.50%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:    4 LGDPPTDGVSSVCFAPHGDLLLASSWDSTLRLYDARQNVPKKVFAGRGALLDCCFQSMASGFCGGLDKTVKMIDLETGTERALGRHDRAVRCVEYDMTSGT 306
            L +PP+DG+S++ F+ H D LL SSWD T+RLYDA  ++ K  FA  G +LDCCF   +SGF  G D TV+ +   +  E  LGRHD  VRCVEY   +GT
Sbjct:   66 LANPPSDGISNLRFSNHSDHLLVSSWDKTVRLYDAEASLLKGEFAHPGPVLDCCFHDDSSGFSAGADHTVRRLSFTSSKEDVLGRHDAPVRCVEYSYAAGT 166
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6997.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2K3M0R7_TRIPR5.410e-3050.96Mitotic checkpoint protein BUB3 n=2 Tax=Trifolium ... [more]
A0A4Y7K1Y8_PAPSO6.590e-3052.88Uncharacterized protein n=3 Tax=Papaver somniferum... [more]
Q10IP1_ORYSJ4.320e-2951.92Mitotic checkpoint protein BUB3, putative, express... [more]
A0A8J5SBI1_ZIZPA1.060e-2850.00Uncharacterized protein n=1 Tax=Zizania palustris ... [more]
M8B3S1_TRIUA1.460e-2850.00Mitotic checkpoint protein BUB3 n=5 Tax=Triticinae... [more]
B8B805_ORYSI2.230e-2850.00Uncharacterized protein n=1 Tax=Oryza sativa subsp... [more]
A0A175YDN8_DAUCS2.670e-2851.92Uncharacterized protein n=1 Tax=Daucus carota subs... [more]
A0A3B6IVH0_WHEAT2.930e-2850.00Uncharacterized protein n=20 Tax=Poaceae TaxID=447... [more]
A0A8J5WWH9_ZIZPA4.040e-2850.00Uncharacterized protein n=1 Tax=Zizania palustris ... [more]
A0A453IMK5_AEGTS4.310e-2850.50Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6997contigC-tenellus_contig6997:787..2264 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog77586.LPERR03G19390.1
PFAMsWD40
Model size315
Max annot lvl35493|Streptophyta
KEGG koko:K02180
KEGG Pathwayko04110,ko04111,ko05166,map04110,map04111,map05166
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000075,GO:0000151,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000779,GO:0000793,GO:0000819,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005819,GO:0005828,GO:0005856,GO:0005874,GO:0005876,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007093,GO:0007094,GO:0007346,GO:0008150,GO:0008608,GO:0009524,GO:0009987,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0015630,GO:0016043,GO:0022402,GO:0030071,GO:0031461,GO:0031577,GO:0031974,GO:0031981,GO:0032182,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033597,GO:0043130,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051276,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0065007,GO:0070013,GO:0071173,GO:0071174,GO:0071840,GO:0080008,GO:0098687,GO:0098813,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140014,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1902494,GO:1903047,GO:1905818,GO:1905819,GO:1990234,GO:1990298,GO:2000816,GO:2001251
Exons3
Evalue6.07e-30
EggNOG OGsKOG1036@1|root,KOG1036@2759|Eukaryota,37I3C@33090|Viridiplantae,3GF97@35493|Streptophyta,3KTFF@4447|Liliopsida,3I69Z@38820|Poales
Ec32 ortholog descriptionWD40-repeat-containing domain
Ec32 orthologEc-15_003170.1
DescriptionMitotic checkpoint protein
Cds size315
COG categoryD
BRITEko00000,ko00001,ko03036,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790005.279279-CDS-C-tenellus_contig6997:786..8831680790005.279279-CDS-C-tenellus_contig6997:786..883Choristocarpus tenellus KU2346CDSC-tenellus_contig6997 787..883 -
1680790005.2906582-CDS-C-tenellus_contig6997:1686..18171680790005.2906582-CDS-C-tenellus_contig6997:1686..1817Choristocarpus tenellus KU2346CDSC-tenellus_contig6997 1687..1817 -
1680790005.3035839-CDS-C-tenellus_contig6997:2177..22641680790005.3035839-CDS-C-tenellus_contig6997:2177..2264Choristocarpus tenellus KU2346CDSC-tenellus_contig6997 2178..2264 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6997.2.1prot_C-tenellus_contig6997.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6997 787..2264 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6997.2.1

>prot_C-tenellus_contig6997.2.1 ID=prot_C-tenellus_contig6997.2.1|Name=mRNA_C-tenellus_contig6997.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=105bp
MLGDPPTDGVSSVCFAPHGDLLLASSWDSTLRLYDARQNVPKKVFAGRGA
LLDCCFQSMASGFCGGLDKTVKMIDLETGTERALGRHDRAVRCVEYDMTS
GTLLT
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mRNA from alignment at C-tenellus_contig6997:787..2264-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6997.2.1 ID=mRNA_C-tenellus_contig6997.2.1|Name=mRNA_C-tenellus_contig6997.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1478bp|location=Sequence derived from alignment at C-tenellus_contig6997:787..2264- (Choristocarpus tenellus KU2346)
ATGCTAGGGGACCCGCCGACTGATGGAGTCTCCTCCGTGTGCTTCGCTCC
CCATGGGGACCTGTTGCTCGCGTCGTCTTGGGACTCGGTGAGGCGAGGGG
AGGGAGGCAATATTGGAGCAGGAGTTGATTTTGTGGCACAAATTCCTTCT
GTATATGTAAATGTGTTGCCTTATCGTTAGTTTATTAAATCCTTGTGCTG
GTGAGTGTTCGTATCACTAGATTCCTCGTGATATCAACTTTTTGAAGTGG
ACGATGGGATTTCAGTCGAAGTCCGTGCCAGGACCTAGTCCAGACTGAGC
GTTTCGTTCTTTTAATCTGTGTGGATGCACTGGTTGCTGTGCCTCGCTTC
TTCCTTAGTCTGTTTGACGCCCAATTGATCTGATTGGTGTGGTGATGCAA
ATGTTGGGGCTGGCAATCCGCTCACCTTGCTTGACACTCTTTTGCAGACT
TTGAGGTTGTACGATGCACGGCAGAACGTGCCAAAGAAGGTGTTTGCCGG
ACGGGGAGCCTTGTTGGACTGCTGCTTCCAGAGTATGGCAAGCGGGTTTT
GTGGAGGGCTAGACAAGACAGTGAAAATGTAAGAGTTGAAGGTCCGATTG
CGATCTTGGCCTTCGCTGTACAGCCCCCCCACTCCCTAAACCAGCCTCCG
TTGAATCAAGGGTGGTGCAAGAACAGACTATAAGCAGGGTAGAGTGAACT
ATATCCTCAGTGTTTGGGCTCTGTTGGCCATCTTTGACTACACACGACAT
CTGGTAGCGCCGTACCCTGATTTCATCGTGACGGATTGCGTCGTGTTTTT
CGAATAATCTGTTCTTCTACTCATCCTGATGTAAGCACGGTACACTGACG
TGAATTCCGAGCGGAAATGCATGCACTCCTGCCAAGCAGACTTGCTCCCC
GACTAGAATCATCATTGGCAATCATCCCGTCTGTTGTAGCGACCAGTGTT
GTACGCGCGGGTAGAATGTGGAGCATTCTCCCAGAGAAATGGAAAACTTT
CCCCCTCCCTCCCCCTTAGTACCTCGATTGATAGTATACCCCGCAGTCTC
TCCCTGTACAGTATGTGACATTGCTTCCTCCACTTCCATCCTCCCCTTCA
CCGAACCTTGTCATTGACATCCCTCTGACTCTGACTGCCGAATGCTGAGT
ATGCTTAACACATCAAAGTGAAAAAAACCCATTCCACTGCCTGCGAAATC
AATGACACGCCCCTCACACTGACAAAAACTCAACGCCATCCCCCCATTCT
CCTTCAACCTCAATCCCTCCACACCCAACTCTAGTTTCTGCCTGTCTCAA
ATTATTGACACATTTCCCCCCCTCCCCCCCACTCCTTAAACCCCCTTCAA
CCCTGTCTGTGGATAAAAATGAATTGAAAAGGATTGACCTGGAGACAGGG
ACAGAGCGGGCATTGGGTCGGCATGACAGGGCAGTCCGTTGCGTGGAGTA
CGACATGACATCTGGCACGTTGTTGACA
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Coding sequence (CDS) from alignment at C-tenellus_contig6997:787..2264-

>mRNA_C-tenellus_contig6997.2.1 ID=mRNA_C-tenellus_contig6997.2.1|Name=mRNA_C-tenellus_contig6997.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=315bp|location=Sequence derived from alignment at C-tenellus_contig6997:787..2264- (Choristocarpus tenellus KU2346)
ATGCTAGGGGACCCGCCGACTGATGGAGTCTCCTCCGTGTGCTTCGCTCC
CCATGGGGACCTGTTGCTCGCGTCGTCTTGGGACTCGACTTTGAGGTTGT
ACGATGCACGGCAGAACGTGCCAAAGAAGGTGTTTGCCGGACGGGGAGCC
TTGTTGGACTGCTGCTTCCAGAGTATGGCAAGCGGGTTTTGTGGAGGGCT
AGACAAGACAGTGAAAATGATTGACCTGGAGACAGGGACAGAGCGGGCAT
TGGGTCGGCATGACAGGGCAGTCCGTTGCGTGGAGTACGACATGACATCT
GGCACGTTGTTGACA
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