mRNA_C-tenellus_contig6990.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6990.1.1
Unique NamemRNA_C-tenellus_contig6990.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig6990.1.1 vs. uniprot
Match: D8LH54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH54_ECTSI)

HSP 1 Score: 290 bits (743), Expect = 2.870e-85
Identity = 157/353 (44.48%), Postives = 216/353 (61.19%), Query Frame = 1 
Query:  223 PEEINSVALSLHCMVEAVIAKYTGKEACQINLNPPKCLAPA----------------WELPSSIYDNDYEKR-------------------ECQKVSSTPLLHYPPPISALMPRNVVLDYGDRVGEHLVRGAVNQAAA-GEGRIDPRALVAVERASLARLQCPRVIGHGGLPLESQQHDEDRGAKRCELLYFTDLGPKDVDRVRQIWALERLVNTNYPP-SKGRQWSFSDRRCWDILPPHVVTQIFQAENATNPVYLKSYYQFKHRPAFKDWADIAPPKDLSYTPRTLYALGAIMDISKKEIGRAHCTSVHIYPSDKALIVLSGFKENKARWLSVFKDRHVMGLRLCEFDDCT 1170
            P  +  +  S    VEAV+ + TG     ++ +PP  L+P                 ++ P+ +     E+                    + Q    + L     PI  L  RNVVL++GD +GE + R A+N+AAA GE R+DPR +VAVERA++A+LQ PRV+G G LP E +++D+DRG ++ ELL FTDLG KDVDR R++WAL RLVNT++PP  +G  W+F +RR WD+LP HVV Q+ + EN T P+ L+ YY    RP+FKDWA +   KD SYTPRTL ALGA+MDISK ++ RA   S+ ++P+D +L+V+SGF     RWLSVFKD+HVMGLRL +  D T
Sbjct:   49 PNGLREIRFSPMVQVEAVMLECTGATPRPLDTSPPAPLSPRACRKNNAPASVVAGSNYKAPTRVAPPSNERLGSGPEDTLKERAPEIGDDLQTQGTDVSTLASTDSPIPHLA-RNVVLEFGDLIGERVARAALNRAAAFGEERVDPRTVVAVERAAVAKLQNPRVVGQGALPREPERNDKDRGTEQGELLAFTDLGRKDVDRTRKVWALARLVNTHHPPPGQGELWNFDNRRYWDVLPQHVVQQVLRVENGTEPLCLRQYYPLNFRPSFKDWASMVAAKDSSYTPRTLVALGALMDISKADLDRAKTKSIKLFPADHSLVVMSGFVATSQRWLSVFKDQHVMGLRLTDKSDNT 400
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6990.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LH54_ECTSI2.870e-8544.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6990contigC-tenellus_contig6990:889..6778 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LH54
Model size1170
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue4.7e-86
EggNOG OGs28K8A@1|root,2QSP1@2759|Eukaryota
Cds size1170
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6990.1.1prot_C-tenellus_contig6990.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6990 889..6778 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790005.0298254-CDS-C-tenellus_contig6990:888..10011680790005.0298254-CDS-C-tenellus_contig6990:888..1001Choristocarpus tenellus KU2346CDSC-tenellus_contig6990 889..1001 -
1680790005.0396817-CDS-C-tenellus_contig6990:2484..26451680790005.0396817-CDS-C-tenellus_contig6990:2484..2645Choristocarpus tenellus KU2346CDSC-tenellus_contig6990 2485..2645 -
1680790005.0490115-CDS-C-tenellus_contig6990:4347..45351680790005.0490115-CDS-C-tenellus_contig6990:4347..4535Choristocarpus tenellus KU2346CDSC-tenellus_contig6990 4348..4535 -
1680790005.058311-CDS-C-tenellus_contig6990:5023..51221680790005.058311-CDS-C-tenellus_contig6990:5023..5122Choristocarpus tenellus KU2346CDSC-tenellus_contig6990 5024..5122 -
1680790005.070618-CDS-C-tenellus_contig6990:5536..58811680790005.070618-CDS-C-tenellus_contig6990:5536..5881Choristocarpus tenellus KU2346CDSC-tenellus_contig6990 5537..5881 -
1680790005.0804477-CDS-C-tenellus_contig6990:6514..67781680790005.0804477-CDS-C-tenellus_contig6990:6514..6778Choristocarpus tenellus KU2346CDSC-tenellus_contig6990 6515..6778 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6990.1.1

>prot_C-tenellus_contig6990.1.1 ID=prot_C-tenellus_contig6990.1.1|Name=mRNA_C-tenellus_contig6990.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=390bp
STLEIVALPSRGSTNHLVQALEEAQKAALGGLEYKTDSRSVGRVWEGCSA
VQNTGSLWSSDMALSTYSDLMLAVPEEINSVALSLHCMVEAVIAKYTGKE
ACQINLNPPKCLAPAWELPSSIYDNDYEKRECQKVSSTPLLHYPPPISAL
MPRNVVLDYGDRVGEHLVRGAVNQAAAGEGRIDPRALVAVERASLARLQC
PRVIGHGGLPLESQQHDEDRGAKRCELLYFTDLGPKDVDRVRQIWALERL
VNTNYPPSKGRQWSFSDRRCWDILPPHVVTQIFQAENATNPVYLKSYYQF
KHRPAFKDWADIAPPKDLSYTPRTLYALGAIMDISKKEIGRAHCTSVHIY
PSDKALIVLSGFKENKARWLSVFKDRHVMGLRLCEFDDCT
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mRNA from alignment at C-tenellus_contig6990:889..6778-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6990.1.1 ID=mRNA_C-tenellus_contig6990.1.1|Name=mRNA_C-tenellus_contig6990.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=5890bp|location=Sequence derived from alignment at C-tenellus_contig6990:889..6778- (Choristocarpus tenellus KU2346)
AGCACACTGGAGATAGTGGCCCTTCCATCCAGGGGATCAACAAACCACCT
TGTACAGGCGCTGGAAGAGGCCCAGAAAGCCGCCTTGGGAGGGTTGGAAT
ACAAGACTGACTCAAGGAGTGTTGGTAGGGTTTGGGAAGGATGCAGTGCT
GTTCAAAATACCGGCAGCCTTTGGAGCTCTGACATGGCCCTTAGTACATA
CTCAGACCTTATGTTAGCTGTGCCTGAGGAAATAAACTCGGTAGCGCTGT
CTCTCCACTGCATGGTGAGAGGATGGAATTTAGACATTTCGGGTGAATGG
GGGAGTGAGGCACATATGAGGAAGAATAACCGAAGTAGGGGCTGAAAAAA
AAGAAAATGGAATGTGTCCAGCCTGCATCAACACATGCAAAACGAGATAT
TTGTAGGTAAAAAATAAAAAGGTTAGAATTTATGGGGAAACTATTTGTAT
CATGTATGAAACTGCCCTCACATTTGTGTGCCGCTTCAAGGCTGACAAAC
TGTAAAGGAGTTGGTGGAGCAAGCAAATAGAAGTCATGACATGTAGCCCT
GCCTGAAATCATTGTCTTGGTCTTAAGTCATTCTAGATCCATTGGTAAGT
TATTCCCAAGATTGTTGCAGGAATATCTCATCCTCTTTCAAAATGGTAAT
GATAGCACTGAGCACGAATTTGATCAAGGGGGTAGGGAACATATATGAAA
TGCAACGGTTGCACCATTGCTATAGTTTGCTTGAAACTACAAGCCGAGTT
ATATGTTTGCCTTCAATACTTGCTCCAGGTAGTAGGTTAACCTATTGTAC
ACCCAAGGCTTTGGACAACTTGATTGCCCCCGAATACACCGCCTGCCTGA
CCATTTATTTCTCCTTTGCCTCCCTACCCCCGGCCCCCCGTTGCAAGGTG
GAGGCTGTAATTGCCAAGTACACCGGAAAAGAAGCATGCCAGATCAATCT
CAACCCGCCTAAGTGTCTTGCACCAGCATGGGAGCTCCCGAGCTCTATTT
ATGACAATGACTATGAAAAGAGAGAATGTCAGAAAGTCTCTTCCACTCCC
CTCCTGCACTACCCGCCGCCCATTTCTGCCCTAATGCCCCGAAATGTGGT
TCTTGACTATGGGGATAGGGTAGGGGAGCATCTCGTGAGGGGAGCAGTGA
ACCAGGCTGCAGCAGGGGAGGGGAGGATTGATCCTCGGGCCCTAGTTGCG
GTTGAGAGGGCATCCCTGGCTAGGTTGCAGTGCCCTCGAGTGGTGAGAGA
TACTGAGAGGAAATATGTGAAAGATAAAAGGAAGGGGTCTATTTGTACTA
TGTGGGATACTATCTAAGAGGCTGATGTCATTAAGTTTGAAGAGTCCCCA
CGAGTGACTTGTGATACACGTGTTTTAAGCATTTTGGATGATAGCTTCAG
CTAAAGATGCTCACACAGCTGATACTCTCTTCTACAGGCAGACCCTCTTA
ATGGGTAGCCATCTGCATTTCGTACATGGTTATGGTGTATATCGCACAGG
GTTCAATGCCTTGAACATTGAAAGGTCCGAATCTATCCCACTCTTAGATG
GTTCCACTCTCTGATCACTCATACTCAGCACTCTTCCAGTACGAGAAAAC
GACTTCCTGATATTTTTTAAGGTATACTGAGCTTGACAGACAAATCATCC
TCTCAGATTGGCCATGGGGGGTTACCACTGGAGTCTCAACAGCACGATGA
AGACCGTGGTGCCAAGCGCTGTGAACTGCTGTACTTCACTGACCTCGGGC
CTAAGGTACTGACTAGCTCAAAGAGTCCTCATAGTTGTTTTTTTTAGGCA
CGCATCATCATCTTTCATACTGTGGCAAGGGATGAAACAAAGTTGTGCCT
CACTCGTACTGAGGCATGGTGTTAGCCATAATCTCGACAGGATGGGCCAT
TGCCCAACTTCTGTGATGCGCTCAAGATCGCTATTGCATGAAAGGCTAAG
CACGAAAGGATTAGCACGCCGGTCGGCACAGGTTCTGTTCTGATCCACAA
TGAGTTGTCTCTTACAACCGGCCTGTACTGACTGCTACCCGTGGATCGAT
CAGTACCTCCTCCAAGACGCATATATATTTTTTCACGGGGTTGTCAGAGA
CATGACCTAGGATCACTGTCACATCAAATACCACATTTCACCTTATACTA
AGGCTAGCCCGTTCTCCTGCTTCTTTCCCTTCTCCTTTTCTGTTCCGGGT
TGTGCCCTGTATTCATTACATATACCTTCCTTTTCAACACTAGGATGTCG
ACCGTGTACGGCAGATTTGGGCACTGGAGAGGCTGGTCAATACTAATTAT
CCCCCCTCCAAAGGTCGTCAGTGGTCCTTTTCTGACAGACGCTGCTGGGA
TATACTCCCACCCCATGTGGTCACCCAGATTTTCCAGGCCGAGAACGCAA
CCAATCCTGTGTATCTCAAGAGTTACTACCAGTGAGAACCTCCTTGCTCC
AATATACTTCTCCCTGGACTTGTAAATAGTTGAAGCCTGATCTCTTGTTC
CGATTTCGTCCTGCTTGTGTTTAAAGTACCATGGTTGATGTTGCCAGATA
AAAATAATTCTGAGGTAGTGTGCATGGTCCCAGTCGCCAAGGAGTTGGAC
ACCTTGAATTTATTCCAGTTAGGGCTATGTTTTACTGCATTCAGTTCAGA
GTCAACTGGTTACAACGTGCGTTCAGTTTTTCGCAAACTGTGGGCAAGGA
AGTAGATCCTCGAGATCTGAAGAAGTTGACATCCTGACTCAAAGTATGAC
TATTGGGTGAATTAGGTTACACGAGTCGGATGGATAATGCAAATGCACTT
GTCCTGGTTAGGGCCCGAATGGACACCCTGGCGTACACCTTCCCCCCCCC
CCACAGATACTTTGAGCCTCCTTAGTTTCAAAATACATTTGTCTTGTTGT
GAGGTGAATCTTTTTTGCCCATCTAAAGGTACTTGTGCGAAAATCGGTTG
CCTTTTGTCCCGAGAGAAAGACAATGCTCCCAAAATGAATTCACGAAATA
CTTGCATGACACTCCAAAAACCATCATGGTACTCCTAGTGCCACAATCGG
ACATGTGTGACTGAGCTACATAAAATACATTGAGGATTGTAGGTTGAAGC
AACATGGAAATATACTCAGAAGGACTAGGAACAACTCGTGCTGTCTACAT
AATGTTCGAGTATTGGAACTGAAGGCAACATACCTGCGAATACAACTGTG
CATACCAATCTTATTTCTCGATTTCATCACATGAACCTCCAAATCGACCA
TGCAGGCCCACCGATGAGCTGCTGATAGCACTAGTTCACCCAACTCCTAT
TGGGAGGGCACGTCTTTCTACATGGAACCCAGAAACTTCAGGGTCGCTGC
CGTGAGTACAACTTACCAATGTCTACTGTTCAGGAAACTTTGGGGATGTA
TTGAGTGGACTAACAGTCACCTTGTGTATGTTGATTTGATTCAGTTTAGG
ATATCATTTATTACTCTGTGCTATTGATATTTCTAGCACGATTGTGGCCA
GGGAGGGGGGAGAAGAAGAGGGAAAGGTTACTGGTTGGTGGGAGTGAGGA
CAGGGTTGAAAGACCAAGTGGAGAGGATTGCGGTCAGGTTAGATCCTACG
GCGACTATGTCCCACAAGTCCTTCTTGGACATTGATTGTTGGCATTGGAC
ATAAGAACATGTCGATCTGAAGGCTAATTATTAGGTGTCATTAGACGATT
CGATTTTCACTTGCCATGACATTGACAAAAATCCGTCACAGTCATATGTC
GTTGTGTGTAAGTAGTGATTACAACCTGCAGAGGTGCAACAAGAAACAAC
ACTGCATAGCATTACCTTGTTGGATCCTCTAGATTCATGTGATTTTTATT
GTTGGGTGCTGAGAGTATTGTTTGTAATGCTGAGCCTCACCAGTGTTGCA
TACCCATTTTTAATATACAGTAACACTTGTGCAATGTAGTCCTTACAACA
TACGTAAGATGTTTAAAACAAAATAATGTCACAGGGTGAGAGCAGAATGA
GCAAGTCGTACTTTGTACTTTGAAGTATCATTTGCTTCAGCAAACGATCG
GTATGCCCTCTTCTTCTTACTTACCTTTCTCCAACTGATCTCTTGATCAT
CTTCCCCTGATCCTCATTGTTGCCTCCTTGAAGATTCAAACACCGACCGG
CCTTCAAGGACTGGGCTGACATAGCCCCCCCAAAGGACCTCAGCTACACG
CCAAGGACACTCTATGCTCTAGGCGCTATCATGGACATCTCTAAGAAAGA
GATAGGGAGGGCACATTGCACTTCTGTTCATATCTACCCCTCAGGTACAT
ACTAACTTTGCACCACAGTAGTGTGGCAGCAGCTACCGCTAGAAAAGGAA
CACATATGCTGGGGATCATTATGCTAAAGCACATGATGTATAAGCAAGCA
CCTCAGCAGCAGATATACTATGGAGTGAAGTCATTGGCAGTTAATCTGCT
GAGAGGGAAATATCATGTATACCATAACATAATGTCGGCGGTATTTCTTC
TAAGTCATGTATCCCACAGGGGGGTGTAATTGATATCCAGGACTCTTTGT
AACTGCTTTCCAATCCGCATCTGTACATCCCTACATCCTCTACTCCTGTG
ACAAAACATCCACCCACAGGGTCTTTTCTTTTACTTCACATGACCTCCTG
ATGTTAATTGCCTAGTCTTTAAGCCTCTTAACAACAGTATGGCCAAATTT
ACCCCCTCTAGGATACCTTGATTCTTACCTATGAAATGATGACATGCGTA
TTTTAAGGTATCGCACACATCACTGCAATGACAGATGCAACTCAACAACG
TCGACCAGAAAGGAATTCCTTCAGCTCATGTTTATGACAAAGCAGTGGAG
TTTCTTTAATAACTTGATGAGAGAAATTATATCAACTTCAATGCAAACCT
GCTTGCACTTCAATCTCCCATGCGCTCCATGTGTTACACTGGAACGCATA
TAGAGCACTCTGTGGCATGGCTAGATCACTCTGTAGCTCACCTTCACCTA
CTAATTTCCTGTTGGATGCTGTATGGCGTTTCTTTCACAATAATAATACA
TGAGGCGTTTTGTAGCCCATTATAGCAGGTTGTTGTTGACCTAGAGTCAT
CCAACATCACACATATGAAGTGTAAAGGCACTTGCAAACAAATTAAAAAC
TGATCACTCTCTGTACTTCTCCGGAGCACTTTGCTGAGATCATGTCAAGA
TCTTTAGCTCTCAAATGACTCATTTCACAATTTTCACACACCTACTTGGA
ATGATCGTAGAGTCAAACTACTGATAGGGGGATGGCGCCGAGTTGTAAAG
GCCCCTCTGACTCTCTGGTGGGGCACAGGTTTTTCGAGAACACAATGCAC
ATCACATCTGTGGGGTGCATTTTGTCTCTTTTTGTGAGTACAACCAATTT
ACAGAAGTAAGAAGCAGGTTATCCTTGTCGATGCCCTCTTCTTAATTGTG
TTCATCTGGAACCAAGTTGAAAAACTCTAAATACTCAAGACACCCAAAAC
ACCCCACTCTTGGTTACTCTTTCTCTTAGTAATGTGCGAGAGGAGGGCAA
AATGCTTTGAAGCCAAGCATACATTGCGCTGGCATCTGTGCACTTTTGTT
CGTTGGGGTGCTGAACGCATCAAGTGCGGAAAATCACTCAAGTTGCTCAC
AACGTTTTTAGCTAGAGCACTCTGAAAGTAGTGAGCTGTGCAACAGACCG
CGTTTTGGACAACCCTAGTAAGGTGCAATAAATGCAGACTCTTATCGCTT
AATCTTCTCACATGAATATCTTGGCAGACAAGGCATTGATCGTCCTCAGT
GGCTTCAAAGAAAACAAGGCTCGCTGGCTATCTGTGTTCAAGGACAGGCA
TGTAATGGGCCTTAGGCTGTGTGAGTTTGATGACTGCACA
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Coding sequence (CDS) from alignment at C-tenellus_contig6990:889..6778-

>mRNA_C-tenellus_contig6990.1.1 ID=mRNA_C-tenellus_contig6990.1.1|Name=mRNA_C-tenellus_contig6990.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1170bp|location=Sequence derived from alignment at C-tenellus_contig6990:889..6778- (Choristocarpus tenellus KU2346)
AGCACACTGGAGATAGTGGCCCTTCCATCCAGGGGATCAACAAACCACCT
TGTACAGGCGCTGGAAGAGGCCCAGAAAGCCGCCTTGGGAGGGTTGGAAT
ACAAGACTGACTCAAGGAGTGTTGGTAGGGTTTGGGAAGGATGCAGTGCT
GTTCAAAATACCGGCAGCCTTTGGAGCTCTGACATGGCCCTTAGTACATA
CTCAGACCTTATGTTAGCTGTGCCTGAGGAAATAAACTCGGTAGCGCTGT
CTCTCCACTGCATGGTGGAGGCTGTAATTGCCAAGTACACCGGAAAAGAA
GCATGCCAGATCAATCTCAACCCGCCTAAGTGTCTTGCACCAGCATGGGA
GCTCCCGAGCTCTATTTATGACAATGACTATGAAAAGAGAGAATGTCAGA
AAGTCTCTTCCACTCCCCTCCTGCACTACCCGCCGCCCATTTCTGCCCTA
ATGCCCCGAAATGTGGTTCTTGACTATGGGGATAGGGTAGGGGAGCATCT
CGTGAGGGGAGCAGTGAACCAGGCTGCAGCAGGGGAGGGGAGGATTGATC
CTCGGGCCCTAGTTGCGGTTGAGAGGGCATCCCTGGCTAGGTTGCAGTGC
CCTCGAGTGATTGGCCATGGGGGGTTACCACTGGAGTCTCAACAGCACGA
TGAAGACCGTGGTGCCAAGCGCTGTGAACTGCTGTACTTCACTGACCTCG
GGCCTAAGGATGTCGACCGTGTACGGCAGATTTGGGCACTGGAGAGGCTG
GTCAATACTAATTATCCCCCCTCCAAAGGTCGTCAGTGGTCCTTTTCTGA
CAGACGCTGCTGGGATATACTCCCACCCCATGTGGTCACCCAGATTTTCC
AGGCCGAGAACGCAACCAATCCTGTGTATCTCAAGAGTTACTACCAATTC
AAACACCGACCGGCCTTCAAGGACTGGGCTGACATAGCCCCCCCAAAGGA
CCTCAGCTACACGCCAAGGACACTCTATGCTCTAGGCGCTATCATGGACA
TCTCTAAGAAAGAGATAGGGAGGGCACATTGCACTTCTGTTCATATCTAC
CCCTCAGACAAGGCATTGATCGTCCTCAGTGGCTTCAAAGAAAACAAGGC
TCGCTGGCTATCTGTGTTCAAGGACAGGCATGTAATGGGCCTTAGGCTGT
GTGAGTTTGATGACTGCACA
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