mRNA_C-tenellus_contig6973.6.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6973.6.1
Unique NamemRNA_C-tenellus_contig6973.6.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig6973.6.1 vs. uniprot
Match: D7FPB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPB5_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 3.040e-67
Identity = 172/442 (38.91%), Postives = 222/442 (50.23%), Query Frame = 1 
Query:    1 QVFNSAIIEALPDALARVDGQLTEGRRPMTLNWTQFIRLMRLCTEGSLSG--------IASLFEETQDLKLDFLTKKRRRPPPLATAHTRTQPC-GKTITATTSPATA------------PTGPT----------------GTLSPHDSSKDEVAVVPGTPDCRTKTAPTCAQERGDRSGVGASRRWYGGKGQGQRVKSVVG-----------------------------MESLMRPLDKHEVSRSYHESLHRRRQRQKEALDRAPSPDTEPKHPYKACGLCQLFFPADSLSATVSFKVLGEFLNMAGAPSGRFERKATQLCAYHRLHICVFCSQFFDPDYPGGVVHPLGHEYRRNVGTTRGGHPGTGEQGGGRARVRTAASVTGSGYTGKESSTNERSSGGLSVLQANGIIPFFDDRFSGLYSVEDALLNTDSAAGRARS 1128
            Q+ +S ++EALPDALAR + QL +  RP+ L+WT+F+ +M LC E   SG        +A LFEE  D KL+FLT++R R PP  T +   Q   GK     ++PA              P GPT                G+ S  D+S  E     GT D     A      RG R   G         G G  + S  G                             ++SL+RP  +HEV R Y E++ +RR+RQ+EAL RAP PD EP   YK CGLCQ  FP +SL +TVS KVL  FL +AGAPS RF+RKA+ L A HRL +CVFC QFFDPD+PGGV+ P      RN   TRGG         GR R+    S + S ++  ESS    S    +  +ANG++PFFDDRF   +S  +A   + + AGRA S
Sbjct:  293 QLLSSGVVEALPDALARAEAQLPQAHRPLGLDWTRFLGVMGLCLESVYSGTGLLAASAVARLFEEKTDDKLEFLTRRRNRLPPRETVNEGAQQHKGKYRGFESAPAVVGADGSIGVAEGTPRGPTKGAKAGSGTTGSSVAAGSYSAEDTSMPEAGSSIGTRDDTLFEAGGSGASRGSRRRDGTPATTTSANGHGGALVSRPGGLVFGGXXXXXXXXXXXYRXXXXGGGAAALKSLLRPQARHEVVRGYGEAVCKRRERQREALKRAPEPDVEPTRAYKPCGLCQAPFPVESLGSTVSLKVLATFLAIAGAPSERFDRKASGLSALHRLPLCVFCGQFFDPDFPGGVIPPT-----RNAALTRGG---------GRRRLLGDVSFSSSTFS-LESSLFPSSPSLRATAEANGLVPFFDDRFPERWS--EAPPPSSAPAGRASS 717
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BLAST of mRNA_C-tenellus_contig6973.6.1 vs. uniprot
Match: A0A6H5JM50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM50_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 7.120e-60
Identity = 170/454 (37.44%), Postives = 221/454 (48.68%), Query Frame = 1 
Query:    1 QVFNSAIIEALPDALARVDGQLTEGRRPMTLNWTQFIRLMRLCTEG--------SLSGIASLFEETQDLKLDFLTKKRRRPPPLATAHTRT-QPCGKTITATTSPATAPTGPTGTLSPHDSSKDEVAVVPGTPDCRTKTAPT----------------------------------------CAQERGDRSGVGASRRWYGGKGQGQRVKS------VVG-----------------------MESLMRPLDKHEVSRSYHESLHRRRQRQKEALDRAPSPDTEPKHPYKACGLCQLFFPADSLSATVSFKVLGEFLNMAGAPSGRFERKATQLCAYHRLHICVFCSQFFDPDYPGGVVHPLGHEYRRNVGTTRGGHPGTGEQGGGRARVRTAASVTGSGYTGKESSTNERSSGGLSVLQANGIIPFFDDRFSGLYSVEDALLNTDSAAGRARS 1128
            Q+ +S +IEALPDALAR + +L + +RP+ L+W +F+ +M LC E         + S +A LFEE  D KL+FLT++R R PP  T      Q  GK     ++PA    G  G++           V  GTP   TK A                                              RG R   G         G G  V S      VVG                       ++SL+RP  +HEV R Y E++ +RR+RQ+EAL RA  PD EP   YK CGLCQ  FP +SL +TVS KVL  FL MAGAPS RF+RKA+ L A HRL +CVFC QFFDPD+PGGV+ P      RN   TRGG         GR R++  AS++ S  +  ESS    S    + ++ANG++PFFDDRF   +S  +A   + + AGRA S
Sbjct:  896 QLLSSGVIEALPDALARAEARLPQAQRPLGLDWNRFLGVMGLCLESVYGGTGLLAASAVARLFEEKTDDKLEFLTRRRNRLPPRDTVKVGARQQKGKYRGFESAPAVV--GADGSI----------GVTEGTPGGATKGAKAGSGTXXXXXXXXSYSAEDXXXXXXXXXXXXXXXXXXXXXXXGASRGSRRREGTPATTTSANGHGGAVASRPGGPVVVGIGGGYGDADWGNRSKRRGGGAAALKSLLRPQARHEVVRGYGEAVCKRRERQREALKRALEPDVEPTRAYKPCGLCQAPFPVESLGSTVSLKVLATFLAMAGAPSERFDRKASGLSALHRLPLCVFCGQFFDPDFPGGVIPPT-----RNATLTRGG---------GRRRLKGDASLSSSSSS-LESSLLLFSPSLRATVEANGLVPFFDDRFPERWS--EAPPPSSAPAGRASS 1320
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BLAST of mRNA_C-tenellus_contig6973.6.1 vs. uniprot
Match: A0A7S4ECL3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ECL3_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.030e-5
Identity = 31/87 (35.63%), Postives = 42/87 (48.28%), Query Frame = 1 
Query:  589 LDRAPSPDTEPKHPYKACGLCQLFFPADSLSATVSFKVLGEFLNMAGAPSGRFERKATQLCAY--HRLHICVFCSQFFDPDYPGGVV 843
            +D    P    K  Y ACGLC   FP+DS + +    V+   L   G      + + ++  A   +RL ICVFCSQF DPD   G+ 
Sbjct:  913 IDEHRRPRRREKRLYNACGLCLQLFPSDSYTISAPHNVIIAQLKNFGLSEDELKERGSESLALWANRLPICVFCSQFLDPDEDSGIA 999
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6973.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FPB5_ECTSI3.040e-6738.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM50_9PHAE7.120e-6037.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4ECL3_9STRA1.030e-535.63Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6973contigC-tenellus_contig6973:4534..5889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1128
Hectar predicted targeting categoryother localisation
Exons2
Cds size1128
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790004.12483-CDS-C-tenellus_contig6973:4533..47151680790004.12483-CDS-C-tenellus_contig6973:4533..4715Choristocarpus tenellus KU2346CDSC-tenellus_contig6973 4534..4715 -
1680790004.135036-CDS-C-tenellus_contig6973:4943..58891680790004.135036-CDS-C-tenellus_contig6973:4943..5889Choristocarpus tenellus KU2346CDSC-tenellus_contig6973 4944..5889 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6973.6.1prot_C-tenellus_contig6973.6.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6973 4534..5889 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6973.6.1

>prot_C-tenellus_contig6973.6.1 ID=prot_C-tenellus_contig6973.6.1|Name=mRNA_C-tenellus_contig6973.6.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=376bp
QVFNSAIIEALPDALARVDGQLTEGRRPMTLNWTQFIRLMRLCTEGSLSG
IASLFEETQDLKLDFLTKKRRRPPPLATAHTRTQPCGKTITATTSPATAP
TGPTGTLSPHDSSKDEVAVVPGTPDCRTKTAPTCAQERGDRSGVGASRRW
YGGKGQGQRVKSVVGMESLMRPLDKHEVSRSYHESLHRRRQRQKEALDRA
PSPDTEPKHPYKACGLCQLFFPADSLSATVSFKVLGEFLNMAGAPSGRFE
RKATQLCAYHRLHICVFCSQFFDPDYPGGVVHPLGHEYRRNVGTTRGGHP
GTGEQGGGRARVRTAASVTGSGYTGKESSTNERSSGGLSVLQANGIIPFF
DDRFSGLYSVEDALLNTDSAAGRARS
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mRNA from alignment at C-tenellus_contig6973:4534..5889-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6973.6.1 ID=mRNA_C-tenellus_contig6973.6.1|Name=mRNA_C-tenellus_contig6973.6.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1356bp|location=Sequence derived from alignment at C-tenellus_contig6973:4534..5889- (Choristocarpus tenellus KU2346)
CAGGTGTTCAACTCGGCAATCATTGAGGCCCTGCCTGATGCACTCGCGCG
CGTGGATGGCCAGCTCACTGAAGGCAGACGCCCTATGACTCTCAACTGGA
CGCAGTTCATCAGACTCATGCGTCTTTGCACTGAGGGTAGCTTGTCCGGC
ATTGCCTCACTCTTTGAGGAGACCCAAGATCTCAAGCTAGACTTCCTCAC
AAAGAAGAGGAGGCGGCCTCCACCCTTGGCAACTGCACACACACGGACTC
AACCGTGTGGTAAGACAATAACAGCAACGACAAGTCCGGCAACCGCACCA
ACAGGTCCAACAGGTACCCTTTCTCCCCACGATTCCAGCAAAGATGAGGT
GGCTGTTGTGCCAGGTACTCCTGATTGTCGTACGAAAACTGCTCCTACCT
GTGCCCAAGAGAGAGGCGACAGGAGTGGAGTTGGTGCAAGCAGGCGTTGG
TATGGAGGTAAGGGGCAAGGGCAAAGGGTGAAATCAGTAGTAGGGATGGA
ATCCTTGATGCGTCCCCTAGATAAGCATGAGGTGAGCCGCAGCTACCATG
AGTCCCTCCATCGGAGGCGGCAAAGGCAGAAGGAAGCCCTTGATAGGGCA
CCATCTCCAGACACAGAGCCAAAGCATCCCTACAAGGCCTGTGGCCTGTG
CCAACTCTTCTTCCCTGCCGATAGTCTCTCAGCCACAGTGAGCTTTAAAG
TCCTTGGGGAGTTCCTCAACATGGCAGGGGCTCCCAGTGGGCGGTTTGAG
CGCAAGGCTACACAGCTGTGTGCATATCACCGCCTCCACATTTGTGTATT
CTGCTCACAGTTCTTTGATCCAGACTACCCTGGAGGGGTGGTCCACCCCC
TCGGACACGAGTATAGGCGAAATGTAGGTACAACACGTGGTGGTCACCCA
GGCACAGGAGAACAGGGGGGGGGAAGAGCAAGAGTCAGGACTGCGGGTGG
AGAAGTGAAGGAGGAGTTTATCACGGAAAGGGAAGGAAATCATTGTGACG
TGGCTAGTAGGCCTGGAGGCAGAGAGGGTGAAGCAACAAGCTTGACATCA
GATAAGCAGGATCGGAGACAGGTATCAGGTGGAGCTACAATGAGTGATGC
AGATGAAAGATCTAGCATGACTGAGGGCTTTTCCACAAAGTGCACGTCCT
CTCTCAATTCCTTCCTTCGACCAGCCTCAGTAACTGGGAGTGGGTATACG
GGCAAGGAAAGCTCCACCAACGAAAGATCCAGCGGCGGACTCTCTGTTCT
CCAGGCCAATGGGATCATACCATTCTTTGATGACCGTTTCTCAGGCCTGT
ACTCTGTGGAAGATGCGTTGCTCAACACTGATTCCGCTGCAGGAAGGGCA
AGGTCA
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Coding sequence (CDS) from alignment at C-tenellus_contig6973:4534..5889-

>mRNA_C-tenellus_contig6973.6.1 ID=mRNA_C-tenellus_contig6973.6.1|Name=mRNA_C-tenellus_contig6973.6.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1128bp|location=Sequence derived from alignment at C-tenellus_contig6973:4534..5889- (Choristocarpus tenellus KU2346)
CAGGTGTTCAACTCGGCAATCATTGAGGCCCTGCCTGATGCACTCGCGCG
CGTGGATGGCCAGCTCACTGAAGGCAGACGCCCTATGACTCTCAACTGGA
CGCAGTTCATCAGACTCATGCGTCTTTGCACTGAGGGTAGCTTGTCCGGC
ATTGCCTCACTCTTTGAGGAGACCCAAGATCTCAAGCTAGACTTCCTCAC
AAAGAAGAGGAGGCGGCCTCCACCCTTGGCAACTGCACACACACGGACTC
AACCGTGTGGTAAGACAATAACAGCAACGACAAGTCCGGCAACCGCACCA
ACAGGTCCAACAGGTACCCTTTCTCCCCACGATTCCAGCAAAGATGAGGT
GGCTGTTGTGCCAGGTACTCCTGATTGTCGTACGAAAACTGCTCCTACCT
GTGCCCAAGAGAGAGGCGACAGGAGTGGAGTTGGTGCAAGCAGGCGTTGG
TATGGAGGTAAGGGGCAAGGGCAAAGGGTGAAATCAGTAGTAGGGATGGA
ATCCTTGATGCGTCCCCTAGATAAGCATGAGGTGAGCCGCAGCTACCATG
AGTCCCTCCATCGGAGGCGGCAAAGGCAGAAGGAAGCCCTTGATAGGGCA
CCATCTCCAGACACAGAGCCAAAGCATCCCTACAAGGCCTGTGGCCTGTG
CCAACTCTTCTTCCCTGCCGATAGTCTCTCAGCCACAGTGAGCTTTAAAG
TCCTTGGGGAGTTCCTCAACATGGCAGGGGCTCCCAGTGGGCGGTTTGAG
CGCAAGGCTACACAGCTGTGTGCATATCACCGCCTCCACATTTGTGTATT
CTGCTCACAGTTCTTTGATCCAGACTACCCTGGAGGGGTGGTCCACCCCC
TCGGACACGAGTATAGGCGAAATGTAGGTACAACACGTGGTGGTCACCCA
GGCACAGGAGAACAGGGGGGGGGAAGAGCAAGAGTCAGGACTGCGGCCTC
AGTAACTGGGAGTGGGTATACGGGCAAGGAAAGCTCCACCAACGAAAGAT
CCAGCGGCGGACTCTCTGTTCTCCAGGCCAATGGGATCATACCATTCTTT
GATGACCGTTTCTCAGGCCTGTACTCTGTGGAAGATGCGTTGCTCAACAC
TGATTCCGCTGCAGGAAGGGCAAGGTCA
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