mRNA_C-tenellus_contig697.9.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig697.9.1
Unique NamemRNA_C-tenellus_contig697.9.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig697.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig697contigC-tenellus_contig697:11609..12788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1180
Hectar predicted targeting categoryother localisation
Exons1
Cds size768
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790003.969586-UTR-C-tenellus_contig697:11608..116351680790003.969586-UTR-C-tenellus_contig697:11608..11635Choristocarpus tenellus KU2346UTRC-tenellus_contig697 11609..11635 +
1680790003.9899514-UTR-C-tenellus_contig697:12403..127881680790003.9899514-UTR-C-tenellus_contig697:12403..12788Choristocarpus tenellus KU2346UTRC-tenellus_contig697 12404..12788 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790003.9794328-CDS-C-tenellus_contig697:11635..124031680790003.9794328-CDS-C-tenellus_contig697:11635..12403Choristocarpus tenellus KU2346CDSC-tenellus_contig697 11636..12403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig697.9.1prot_C-tenellus_contig697.9.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig697 11636..12403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig697.9.1

>prot_C-tenellus_contig697.9.1 ID=prot_C-tenellus_contig697.9.1|Name=mRNA_C-tenellus_contig697.9.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=256bp
MEYHPVTQYSDLVMRTTLAGAVGGGIMAPTTSSMAAPVMRTTWQPAPSTH
QLPFDRSGSHSARPFSQYVRREDVVHSGGGGGGIEARSEAGARARMGLDV
SIASSSPVNSSSFPRNRHGSFAESHNTFPFQQQLTLPLQSQLPQSQVHRN
PSSSPQFHHHHAGRGRSFESLDFPTSSGLIGGAEGQAQGGAAGGSAAIGS
FSAMKGDTLAEEVSAATGGWEARWKQEEEDRHNQRGSIRQHHPRKLGRGE
MQRDH*
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mRNA from alignment at C-tenellus_contig697:11609..12788+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig697.9.1 ID=mRNA_C-tenellus_contig697.9.1|Name=mRNA_C-tenellus_contig697.9.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1180bp|location=Sequence derived from alignment at C-tenellus_contig697:11609..12788+ (Choristocarpus tenellus KU2346)
GCAGAGGAACTTCAGATTGTAGAAGGAATGGAGTACCACCCAGTGACTCA
GTACTCTGACTTGGTGATGCGCACCACCTTAGCAGGGGCAGTGGGCGGGG
GAATAATGGCACCAACTACCTCTTCCATGGCGGCTCCAGTAATGCGTACC
ACTTGGCAGCCTGCTCCATCTACCCATCAGCTGCCTTTTGATCGATCTGG
GTCCCATTCTGCTCGGCCCTTCAGTCAATATGTTCGCCGTGAAGATGTGG
TGCACAGTGGAGGGGGAGGAGGTGGGATCGAGGCCAGGTCTGAGGCTGGG
GCCAGAGCAAGGATGGGACTGGATGTGTCCATTGCTTCCTCTTCTCCTGT
GAATTCGTCATCCTTCCCCCGTAACAGACATGGATCCTTTGCTGAATCTC
ACAACACTTTTCCTTTCCAGCAGCAGCTGACATTACCCCTGCAGTCGCAG
CTGCCACAGTCGCAAGTACATCGGAATCCTTCCTCTTCTCCTCAATTTCA
CCATCACCATGCTGGAAGGGGCAGAAGCTTCGAGTCGTTGGACTTCCCCA
CATCAAGTGGCTTGATTGGGGGAGCAGAGGGGCAGGCACAAGGGGGTGCA
GCAGGTGGCTCTGCTGCAATAGGCAGTTTTTCTGCAATGAAGGGGGATAC
CCTGGCCGAGGAAGTGAGTGCTGCCACAGGTGGGTGGGAAGCAAGGTGGA
AGCAGGAGGAAGAGGACAGGCATAATCAGAGAGGAAGTATAAGGCAGCAT
CACCCTCGCAAATTGGGCCGAGGAGAAATGCAGCGAGATCACTAGAGCAG
TAAGATTAGATAATCTGATCAAATATGTCCATTGAGCATACTCCATGTGC
CTGAATTGTGTAGAGAATGGATGCAGTTGTCTTATGGAAAGGCTGGCTCA
ACAAATGATGCTCTTGAGCAGGAGCAACTTTTGAACTGTTTTTTAGGTGC
AAGGGAGAAAGTGAGTTCCCGTTGATGGTAGTCAATGCTGCAGCCTGCTG
GGCACCCCCCGCAGTTGGTCCTCTGCAAAGAATGTGTCTATGTTGTTCAT
GACAATTTGTCTTTCATGTGGATTATTGTGCTCACCCTCTTATAAATACT
GAGGCCACTTTATGCCACCAAGTTCACCATAACTTGTCTAGTTATCCATT
GAGTAAATACTGAAGCTACCACATGCCATC
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Coding sequence (CDS) from alignment at C-tenellus_contig697:11609..12788+

>mRNA_C-tenellus_contig697.9.1 ID=mRNA_C-tenellus_contig697.9.1|Name=mRNA_C-tenellus_contig697.9.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=768bp|location=Sequence derived from alignment at C-tenellus_contig697:11609..12788+ (Choristocarpus tenellus KU2346)
ATGGAGTACCACCCAGTGACTCAGTACTCTGACTTGGTGATGCGCACCAC
CTTAGCAGGGGCAGTGGGCGGGGGAATAATGGCACCAACTACCTCTTCCA
TGGCGGCTCCAGTAATGCGTACCACTTGGCAGCCTGCTCCATCTACCCAT
CAGCTGCCTTTTGATCGATCTGGGTCCCATTCTGCTCGGCCCTTCAGTCA
ATATGTTCGCCGTGAAGATGTGGTGCACAGTGGAGGGGGAGGAGGTGGGA
TCGAGGCCAGGTCTGAGGCTGGGGCCAGAGCAAGGATGGGACTGGATGTG
TCCATTGCTTCCTCTTCTCCTGTGAATTCGTCATCCTTCCCCCGTAACAG
ACATGGATCCTTTGCTGAATCTCACAACACTTTTCCTTTCCAGCAGCAGC
TGACATTACCCCTGCAGTCGCAGCTGCCACAGTCGCAAGTACATCGGAAT
CCTTCCTCTTCTCCTCAATTTCACCATCACCATGCTGGAAGGGGCAGAAG
CTTCGAGTCGTTGGACTTCCCCACATCAAGTGGCTTGATTGGGGGAGCAG
AGGGGCAGGCACAAGGGGGTGCAGCAGGTGGCTCTGCTGCAATAGGCAGT
TTTTCTGCAATGAAGGGGGATACCCTGGCCGAGGAAGTGAGTGCTGCCAC
AGGTGGGTGGGAAGCAAGGTGGAAGCAGGAGGAAGAGGACAGGCATAATC
AGAGAGGAAGTATAAGGCAGCATCACCCTCGCAAATTGGGCCGAGGAGAA
ATGCAGCGAGATCACTAG
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