mRNA_C-tenellus_contig6963.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6963.1.1
Unique NamemRNA_C-tenellus_contig6963.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6963.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6963contigC-tenellus_contig6963:520..2432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1825
Hectar predicted targeting categoryother localisation
Exons2
Cds size1134
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790003.7657707-UTR-C-tenellus_contig6963:519..8301680790003.7657707-UTR-C-tenellus_contig6963:519..830Choristocarpus tenellus KU2346UTRC-tenellus_contig6963 520..830 -
1680790003.7894704-UTR-C-tenellus_contig6963:1964..21131680790003.7894704-UTR-C-tenellus_contig6963:1964..2113Choristocarpus tenellus KU2346UTRC-tenellus_contig6963 1965..2113 -
1680790003.799092-UTR-C-tenellus_contig6963:2201..24321680790003.799092-UTR-C-tenellus_contig6963:2201..2432Choristocarpus tenellus KU2346UTRC-tenellus_contig6963 2202..2432 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790003.7762976-CDS-C-tenellus_contig6963:830..19641680790003.7762976-CDS-C-tenellus_contig6963:830..1964Choristocarpus tenellus KU2346CDSC-tenellus_contig6963 831..1964 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6963.1.1prot_C-tenellus_contig6963.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6963 831..1964 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6963.1.1

>prot_C-tenellus_contig6963.1.1 ID=prot_C-tenellus_contig6963.1.1|Name=mRNA_C-tenellus_contig6963.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=378bp
MQNRNCLNLAHLSLTQFDGPHSCPQIVTTRRRLQTMISLTPRRAGTCLRP
LVGILALLGPVSALRDQSVPITARLASPEELEIDDDSYTAPAYGREIRWL
HSGDDVSSSSTSTYSYNFGDDDECGLGSVCSTCLTTFNNATLFGECANST
VTACPDMAEVHCCAAATLGTECTSSATFQTHLYRFVDDSMNGIGCPEIVD
FLDFSTCLDVDTANDDSSGSVNGTVSSDDFSETRNSTIDGNSAAELCFDI
DDGLCLDCIKEFVGTATSNFNSECFEYEDSSLPLCDYYARSYCCQAEKTG
SACGSSTSFLAYLDQVINEDIMDVADCPNIDFSECLNGDSSLRTISGAHY
SGNAPNRFFAFAATLACLAIATLTFLQ*
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mRNA from alignment at C-tenellus_contig6963:520..2432-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6963.1.1 ID=mRNA_C-tenellus_contig6963.1.1|Name=mRNA_C-tenellus_contig6963.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1913bp|location=Sequence derived from alignment at C-tenellus_contig6963:520..2432- (Choristocarpus tenellus KU2346)
CAGCGTTGAGCAGGCAAGTTCACGTGCGGTTATACTCTTTTGCCTGTGGT
TCTTGCAACGTGTTTCTTCGCCCCTGTCGTTCTGACATCAGTATCGTCCT
GTACATCTTCCTCACGAGGTGGTCATGTTTGTGGGAGCTTCTTTGCACAA
CCTTCACATCCATCATAATCTCACACACTGGTTGTATCCACTGGTGAATT
ATTAGTGAGAAGAAGTTCGCTGAGGTCAAATCTTGGTGCCTATTGACTTG
GTTTGTTCTCTATTGATCTACTAGTTAACGCGTGGACCATAGACAAAATT
GCCAAATACCTAATGATACTTAACGACGAGGAACCTACGTATTTCGTTGA
ACTACTCAACCCCCTTTCTCTGTATCGAACTATGAGTCACCAGTACTACT
CAGGGGACCTGGTACGCCCTTACATCGCGCTATAATTCAACACCCTACTC
AACGTGCCTACATTACCCATGCAAAATAGGAACTGCCTCAATCTAGCTCA
CCTCTCCCTCACTCAATTCGATGGACCGCACTCATGCCCACAGATAGTAA
CGACAAGGAGACGGTTGCAGACCATGATTTCTCTGACTCCTCGTCGTGCT
GGTACCTGCCTCCGCCCGCTGGTTGGCATTTTGGCCCTACTTGGTCCGGT
ATCGGCTCTTCGTGACCAATCTGTCCCCATAACCGCGAGATTGGCGTCAC
CTGAAGAACTGGAGATAGATGATGATTCCTACACGGCTCCCGCATACGGA
CGTGAAATCAGGTGGCTGCACTCAGGTGATGACGTCTCATCCTCCTCCAC
TTCCACCTACTCCTACAACTTCGGCGATGATGATGAGTGTGGACTTGGGA
GTGTTTGTTCAACCTGCCTGACGACCTTCAACAACGCAACATTGTTTGGC
GAGTGCGCAAACTCGACGGTTACCGCGTGTCCAGACATGGCAGAAGTTCA
CTGTTGTGCAGCAGCGACCTTGGGAACAGAATGCACATCAAGTGCCACGT
TTCAAACTCATCTCTACCGCTTCGTTGACGATTCAATGAACGGTATTGGA
TGCCCGGAGATTGTTGATTTTTTGGATTTCTCGACCTGCTTAGACGTGGA
CACAGCCAATGACGATTCCAGTGGAAGTGTGAATGGCACCGTTTCCTCGG
ACGATTTTTCTGAGACGAGGAACTCCACTATCGATGGAAACTCTGCCGCA
GAGTTGTGTTTCGATATAGATGATGGTTTGTGTTTGGATTGCATTAAAGA
GTTTGTTGGAACTGCGACATCGAACTTCAACAGTGAATGCTTTGAGTATG
AGGACTCATCGCTGCCTCTTTGTGATTACTATGCAAGAAGCTACTGCTGT
CAAGCAGAGAAAACAGGATCAGCCTGTGGATCAAGCACCTCTTTCCTAGC
ATACCTCGACCAGGTCATAAATGAGGACATTATGGATGTTGCTGATTGCC
CAAACATAGATTTTTCTGAATGTTTGAACGGTGATTCATCTTTGAGGACA
ATTAGTGGGGCGCATTACTCAGGCAATGCACCCAATAGGTTCTTTGCATT
TGCAGCTACACTGGCATGTCTTGCAATTGCCACCCTCACATTTTTGCAAT
GATTATGCGAAATGGTACACAGATATTTCACAGGTGTTCGATGTTTTTGT
GTGTTCATCCTTTTTTGTACGATTTGTGTTTGTTTACCCCTGACTGGTGC
GTCCATTTTGGACACCAAGTCCTCTTCTTGGTCTATGATATTTTGGCGTT
TGATGTTCTCTGATGTTATTGTCTCTACTCGTAGTAGATAGGGTGAAGCA
CCGTAATTTTGTCATAGAGATGTTCATTTTTACGGTGTTTTTTTCATGAC
GACATGGTCAAGTGTTTATATGCAATGGGTAGTTATGGTGTGCTTTCCCC
CTCAACACACAAG
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Coding sequence (CDS) from alignment at C-tenellus_contig6963:520..2432-

>mRNA_C-tenellus_contig6963.1.1 ID=mRNA_C-tenellus_contig6963.1.1|Name=mRNA_C-tenellus_contig6963.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1134bp|location=Sequence derived from alignment at C-tenellus_contig6963:520..2432- (Choristocarpus tenellus KU2346)
ATGCAAAATAGGAACTGCCTCAATCTAGCTCACCTCTCCCTCACTCAATT
CGATGGACCGCACTCATGCCCACAGATAGTAACGACAAGGAGACGGTTGC
AGACCATGATTTCTCTGACTCCTCGTCGTGCTGGTACCTGCCTCCGCCCG
CTGGTTGGCATTTTGGCCCTACTTGGTCCGGTATCGGCTCTTCGTGACCA
ATCTGTCCCCATAACCGCGAGATTGGCGTCACCTGAAGAACTGGAGATAG
ATGATGATTCCTACACGGCTCCCGCATACGGACGTGAAATCAGGTGGCTG
CACTCAGGTGATGACGTCTCATCCTCCTCCACTTCCACCTACTCCTACAA
CTTCGGCGATGATGATGAGTGTGGACTTGGGAGTGTTTGTTCAACCTGCC
TGACGACCTTCAACAACGCAACATTGTTTGGCGAGTGCGCAAACTCGACG
GTTACCGCGTGTCCAGACATGGCAGAAGTTCACTGTTGTGCAGCAGCGAC
CTTGGGAACAGAATGCACATCAAGTGCCACGTTTCAAACTCATCTCTACC
GCTTCGTTGACGATTCAATGAACGGTATTGGATGCCCGGAGATTGTTGAT
TTTTTGGATTTCTCGACCTGCTTAGACGTGGACACAGCCAATGACGATTC
CAGTGGAAGTGTGAATGGCACCGTTTCCTCGGACGATTTTTCTGAGACGA
GGAACTCCACTATCGATGGAAACTCTGCCGCAGAGTTGTGTTTCGATATA
GATGATGGTTTGTGTTTGGATTGCATTAAAGAGTTTGTTGGAACTGCGAC
ATCGAACTTCAACAGTGAATGCTTTGAGTATGAGGACTCATCGCTGCCTC
TTTGTGATTACTATGCAAGAAGCTACTGCTGTCAAGCAGAGAAAACAGGA
TCAGCCTGTGGATCAAGCACCTCTTTCCTAGCATACCTCGACCAGGTCAT
AAATGAGGACATTATGGATGTTGCTGATTGCCCAAACATAGATTTTTCTG
AATGTTTGAACGGTGATTCATCTTTGAGGACAATTAGTGGGGCGCATTAC
TCAGGCAATGCACCCAATAGGTTCTTTGCATTTGCAGCTACACTGGCATG
TCTTGCAATTGCCACCCTCACATTTTTGCAATGA
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