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Homology
BLAST of mRNA_C-tenellus_contig6950.1.1 vs. uniprot
Match: D7G847_ECTSI (NTP_transf_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G847_ECTSI) HSP 1 Score: 209 bits (533), Expect = 1.310e-52 Identity = 192/537 (35.75%), Postives = 239/537 (44.51%), Query Frame = 3
Query: 195 EHGWQK-SDVVDDIRSWFCSLSTHERLRALAVEDVIWIRLFNILYRKHKSWIQQGGRPPTWDKDKVQKIYDRLQRNEMNRAGAXXXXXXXXXXXXXXXXVRRIQSSSPSASPQADACPPSVVQGVTGAFPTSTEVVGVPDTLEPTKNHTVRGGKESKAQSSRGGSVEVKARFVAQQLVPDVCSTSVGKTVSQRRGTKHSSSGKPGETDEAAEAVEVKTGAGSQGGVKGRERDAFGGEDEGEGEVDPDSVLRAVERLQEAVRLCCVARKVSG-------------GGCLSD---TLTLSEEELSEPHQLLASLQLCSSWGNFG------------------GRDGHGGNGVGRE----------------RGGFLSRPLAESDARRA-ALQPAAAPLHETTWLASKVPGATLGDLLANRLELSLWGSYWKRSRSMRSSTTGTSTGCTKLSALLEEVSKLSRYWKMLPLTDRLWLLEGLPEAQAAASRRAAGGKTSSDSQGEQIGADSHDDMRDLLFTPVSWCYKDDGAAVRLAVERIR 1649
+ GW++ D+ +D+ SWFC LST ERL+A+AV+DVIWIRLFN+LYRKHKSW+ Q G PPTW+++KV+KIY+RLQRNE NR XXXXXXXXXXXXXX G PT E G D P G S GGSV+ S L+ ERL +AVRLC + +G GG S LTLSE ELS+P +LL L+L + + G G+D G GV + GFL+ LAE +AR A A PL ET WLA + P ATLGDLL NRLELSLW SYW R R R S G L+++ +E L YW+ LPL R +LEGLPEA A AS +S S + A D ++ L+F P +WC++DDGAAV+L V R+R
Sbjct: 8 QRGWKRREDMAEDLSSWFCQLSTQERLQAIAVDDVIWIRLFNVLYRKHKSWMSQRGTPPTWEREKVRKIYERLQRNEQNRVAGVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XAVAAGTKPTPVET-GSLDNGGP--------GAAGGYCSGGGGSVQ--------------------------------------------------------------------------------SALQVGERLNDAVRLCSLGCGSAGXXXXXXKGEGGREGGASSGPRGALTLSEAELSKPRRLLNDLRLLACRPSDGKEQTAAAAAASALPKSEQGKDVRGKRGVAAAAAPAAAAEASLPAAGCKAGFLTPALAEEEARWAGASADCHDPLMETAWLAERFPKATLGDLLVNRLELSLWASYWGRRRP-RGSVGGIPVS--PLASVAQEAGILRGYWRTLPLRQRHQILEGLPEAAALASDSCDSTARNSSSSSSRSRA-REDVVQCLMFAPAAWCFQDDGAAVKLVVGRLR 447
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Stop | 0 |
Start | 1 |
Seed ortholog | 2880.D7G847 |
PFAMs | NTP_transf_2,PAP_assoc |
Model size | 2354 |
Max annot lvl | 2759|Eukaryota |
KEGG ko | ko:K03514 |
KEGG Pathway | ko03018,map03018 |
KEGG Module | M00393 |
Hectar predicted targeting category | other localisation |
Exons | 5 |
Evalue | 9.33e-54 |
EggNOG OGs | COG5260@1|root,KOG1906@2759|Eukaryota |
EC | 2.7.7.19 |
Description | polynucleotide adenylyltransferase activity |
Cds size | 2187 |
COG category | L |
BRITE | ko00000,ko00001,ko00002,ko01000,ko03016,ko03019 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1680790002.984167-CDS-C-tenellus_contig6950:1..748 | 1680790002.984167-CDS-C-tenellus_contig6950:1..748 | Choristocarpus tenellus KU2346 | CDS | C-tenellus_contig6950 2..748 - |
1680790002.998096-CDS-C-tenellus_contig6950:1452..1702 | 1680790002.998096-CDS-C-tenellus_contig6950:1452..1702 | Choristocarpus tenellus KU2346 | CDS | C-tenellus_contig6950 1453..1702 - |
1680790003.0080802-CDS-C-tenellus_contig6950:2257..3228 | 1680790003.0080802-CDS-C-tenellus_contig6950:2257..3228 | Choristocarpus tenellus KU2346 | CDS | C-tenellus_contig6950 2258..3228 - |
1680790003.020385-CDS-C-tenellus_contig6950:3811..3922 | 1680790003.020385-CDS-C-tenellus_contig6950:3811..3922 | Choristocarpus tenellus KU2346 | CDS | C-tenellus_contig6950 3812..3922 - |
1680790003.0328326-CDS-C-tenellus_contig6950:4257..4365 | 1680790003.0328326-CDS-C-tenellus_contig6950:4257..4365 | Choristocarpus tenellus KU2346 | CDS | C-tenellus_contig6950 4258..4365 - |
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1680790003.0448987-UTR-C-tenellus_contig6950:4365..4532 | 1680790003.0448987-UTR-C-tenellus_contig6950:4365..4532 | Choristocarpus tenellus KU2346 | UTR | C-tenellus_contig6950 4366..4532 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig6950.1.1 >prot_C-tenellus_contig6950.1.1 ID=prot_C-tenellus_contig6950.1.1|Name=mRNA_C-tenellus_contig6950.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=729bp
MSSTPGGEGEHGWQKSDVVDDIRSWFCSLSTHERLRALAVEDVIWIRLFN ILYRKHKSWIQQGGRPPTWDKDKVQKIYDRLQRNEMNRAGAGGLIGAASP ASPTSRSVRRIQSSSPSASPQADACPPSVVQGVTGAFPTSTEVVGVPDTL EPTKNHTVRGGKESKAQSSRGGSVEVKARFVAQQLVPDVCSTSVGKTVSQ RRGTKHSSSGKPGETDEAAEAVEVKTGAGSQGGVKGRERDAFGGEDEGEG EVDPDSVLRAVERLQEAVRLCCVARKVSGGGCLSDTLTLSEEELSEPHQL LASLQLCSSWGNFGGRDGHGGNGVGRERGGFLSRPLAESDARRAALQPAA APLHETTWLASKVPGATLGDLLANRLELSLWGSYWKRSRSMRSSTTGTST GCTKLSALLEEVSKLSRYWKMLPLTDRLWLLEGLPEAQAAASRRAAGGKT SSDSQGEQIGADSHDDMRDLLFTPVSWCYKDDGAAVRLAVERIRTSCADG VTEEVREPGVSGIGDEGKGAVLARSPSQAMNGEAGSGGGGSGSGDGSPGE GKGKSKKSRRRRKKGLVDVESESVNRKTSNGVVRAGAFTEEGKALSEDAG KDSEDDKSLMPGEVPPGRTFVDVSSATGSRPVGDMAEGELRTENGGDKGV SETPPAAVTISDELNSDGWMVSTSRRKPKDNGREEGSSRRARGGGGGSGN KPAKDNQTSKPRSETHREHRDHREGHGER back to topmRNA from alignment at C-tenellus_contig6950:2..4532- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-tenellus_contig6950.1.1 ID=mRNA_C-tenellus_contig6950.1.1|Name=mRNA_C-tenellus_contig6950.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4531bp|location=Sequence derived from alignment at C-tenellus_contig6950:2..4532- (Choristocarpus tenellus KU2346) GGGTGTGTGCGGTTCTAGCTCTTGGAACGGTGGAAGTAAGAAGGGCGAGT
GGTGCCATCTGAAGGTGCTAGGGATTATTTTGGTTTTTGTCGTGGGGATT
CCGTTCGTTACAGTGGAGGCAAGCCATTAAGCATCAAACGCTGGTGAGGG
GTAGTGTTAGTGGGCGAATGTCGTCAACGCCTGGCGGCGAGGGAGAACAC
GGCTGGCAGAAGAGTGACGTGGTGGACGATATTCGTTCGTGGTTCTGTAG
CCTCAGCACGCATGAGCGATTGAGGGTGAGTACTGTCATTTGTGGTATCT
ATCACCCATTGAAGGAGTCTTTCGCTTCTTACATGAAGAGATGCTTCCTC
ATCTAGGATGTTGAAGGGCATTCGATGTCCGTCTTGCGCGTAAAAGCGAA
GAAATATATGGTTTTACCGTACAATGTGCTGTGGTGGGCAACATGCCGGT
GGTCTTTGATGCCGGCCCCATTGATACGTCATCACATGTTTCGCCACTAG
TTTGTACGGGCTGATGGGTAGTATGGTGGAACACGCTGCTGTCCTCAGGC
GGTACGCTCGCACATGTCATTTCCCACCTTGTACTATCTGCTCTTGCCGC
TGCGCTGCAGGCTCTTGCTGTCGAGGATGTGATCTGGATACGCCTCTTCA
ACATTCTTTATCGCAAACACAAGTCTTGGATCCAACAGGGAGGTCGTCCC
CCAACCTGGGATAAGGATAAGGTAAATATGCAATAACAACAAAAAATTTC
CTGAGGGGTGCATTTGGTGTCTCTCAGCCAGGTTATATTGATGATGCCTG
AGACTCGTAGATGACCAGCAGCTGTTTACAGATGCAAATAATTTGCTCAG
CACCATTTTCAGCACGTCCTCACCCTAATCCTATTTTCAGCGAAATGCCC
GTTGTCCAAGCACACCACTCTCAATGGTAGAGCTGCATTAACAATACTTC
AGACTTCAAGCAATAGTATAGCTATTTCGTTCAGATAGGAAGACCTACAT
GGTGTGTCTCCATGTTACAACAAAGTCAGGCGCTCTTTTATGCTCCACGG
CAGCCCAACCTTCAAACTACAGACAGCAATCCCAGAAAGTTGACCTTGCA
GTAGGCCCTTATGATCCTGTCTCTTGCTTATTCCCTGGTGTTAACGTTTT
TACTTTTTTACAGCTACACTGAAGCACCTTGCCTATTTTGAAAAACCTGT
CAAGAGTATCATTGACAGAGTAATACATCACACTCAGCTTACTGTGAAAA
TGACCTGCAACCATGTTAAAATAAGCAAAATCCCCATGCCCTACCCTTTA
CCAGGTGCAAAAGATATACGATAGACTGCAGAGAAACGAGATGAACAGGG
CTGGGGCAGGGGGACTGATTGGTGCTGCAAGCCCTGCAAGTCCTACCTCC
CGTTCTGTTCGCCGTATCCAGAGCTCTTCTCCATCAGCCTCTCCACAGGC
AGATGCCTGCCCACCCTCTGTTGTACAGGGTGTGACTGGAGCATTTCCAA
CGAGTACAGAGGTAGTAGGTGTACCTGATACCTTAGAACCAACCAAGAAT
CATACAGTTAGAGGAGGTAAGGAGAGCAAAGCCCAGTCTTCGAGGGGGGG
TAGTGTAGAGGTAAAGGCAAGATTTGTGGCACAACAGCTAGTGCCAGACG
TATGTTCAACTTCTGTGGGAAAAACAGTATCACAGCGAAGAGGGACAAAA
CATAGCTCTAGTGGGAAGCCTGGAGAAACGGACGAAGCAGCAGAGGCAGT
GGAGGTGAAAACAGGAGCAGGTTCGCAAGGCGGGGTGAAGGGGAGGGAGA
GGGATGCATTTGGGGGCGAAGACGAAGGAGAAGGTGAGGTGGATCCAGAT
TCAGTGCTAAGGGCAGTAGAGCGCTTACAGGAAGCTGTGCGTCTGTGTTG
TGTTGCTAGGAAAGTTTCTGGTGGTGGTTGTCTGTCGGACACACTTACCC
TCAGTGAGGAGGAGCTTTCTGAACCACACCAGCTTTTGGCTTCTCTCCAG
CTCTGCTCGTCTTGGGGCAATTTTGGGGGCAGGGATGGCCATGGGGGCAA
CGGTGTAGGCCGGGAAAGGGGAGGATTCTTGAGCCGCCCGTTGGCTGAAT
CAGACGCTCGGAGGGCGGCATTGCAGCCAGCAGCAGCCCCACTGCATGAA
ACGACCTGGCTGGCGTCCAAGGTACCTGGAGCAACTCTTGGAGACTTGTT
GGCAAACCGCCTGGAACTCAGCTTATGGGGAAGTTACTGGAAAAGAAGTC
GATCAATGAGGTCTAGCACTACCGGGTGAGCTTTCAAGAACTAGGAGGTG
TATGTTGCGAAGAGGTTACTGTGTAATGTGTCTTGAAGCTGTACCCTACC
CTGCTATTGTTTTGTTCTTTTTTTTATACCCTTGCATAGTATGAGGCAAT
CGTTGACCTTTTTTTTCCTTTTTCAAATTCAATAGTTGAGGTTGTGATTT
TTTTTCTGGGGGAGCGTTTTGAATTGCAATCAAAATGTGTCCCAAGGTCT
TGCATCTTTTCTCCCAGTAGAATGATACAATAGTGGTACATGAATGTATG
GTATATACTTAAACCTCTGGGAGCCTCTCTCTAAACGTCCCTTAGTATAC
CCTATTCGAAACGTGAGTGTATAAATGCACGAGCTTTTTTTTTTTGCAAT
TTTTTTTACTGTTGTTTTGGCAGACTGGTGTCGATTAGTATCCTCCCAGC
TCGAATTTAATATCCCCTTCATACATACATGAATACTTTTGCTACAATTT
TTGAGATTTTGTCTTCAGGCTGGCATATTATTGTGATATCCTTGTGCTTG
CATGCTCAGTCTCTTCTCTTTTCCTTCCAGTACATCAACAGGATGCACCA
AGCTGTCAGCCTTGCTGGAGGAGGTATCCAAGCTATCTAGATACTGGAAG
ATGCTCCCTCTTACAGATCGATTGTGGCTGCTTGAGGGTCTCCCAGAGGC
TCAGGCTGCAGCATCACGGCGTGCAGCAGGAGGGAAGACTAGCAGTGATA
GTCAGGGGGAACAAATAGGGGCAGATTCACACGATGATATGAGAGATTTG
CTGTTCACACCGGTATCCTGGTGCTACAAGGTCTGTCAGACTTGCTCTTT
GTTTGATGCATGTGTGTGTCTATTGCTTGGAACATTCCTTTACAGTCTGT
GCAGTATTGCTTGCATATGGTGTGACACATGTACCTGTGTCAGTCTAGTG
AGGCGAGTGGATCTTTTGGTTCCCTCTAAGGTAACCAATATTTTGTGGCA
GTCTATGCGAGGGGCTATAATCCTGTGCCACATCATGATGTGTTTCCAAA
AGCATTTATGTTAGTACCTTTATCCCAGACGCCAAGCGTCATAGGCCAAG
ACTTAAGTAATCTATCTTTGTAGACCTCAATGCGTTTTTTTAAGACTTTT
TGTCATGTTGCTCGCATGGTGCATGTGTATTGCCTCATGCTGTATGAGAC
ATCTGCTGCCTCTTACGACCCCAGGAAGGACCATGCTGGGATGATTATTT
GGACCTGTTCCAGAAAACACCTTGGGGAATCCCAAGGTTTTTTGGAAAAG
CATTTCAACATTGAGATTTTGGCCAATTGCAAAGAATGATAAATATCCTA
CTGTACTACTATTGTTGTGTTGTACTGTGACTGTTCCAGGCTACTACGGA
GTCAGCTTTCATATTTGGAAGTATGCTGTATTTGTAGAGATACCGCATTT
AGAAAATCATATTTTGTTCTTGCGTACGTGAACATATGTAACAGTTGGGG
TTAAGCTAATACCCACTCGTGGATGACTCCACAGGATGATGGTGCAGCTG
TGCGACTGGCAGTAGAGAGAATTAGGACTAGCTGTGCTGATGGTGTGACT
GAGGAGGTGAGGGAGCCAGGTGTAAGTGGCATTGGGGATGAAGGGAAAGG
GGCAGTCCTGGCGAGGTCACCATCTCAAGCCATGAATGGCGAGGCTGGCT
CAGGCGGGGGTGGTAGTGGCAGCGGGGATGGCAGTCCTGGAGAAGGTAAA
GGGAAAAGTAAGAAGTCAAGACGCAGGCGTAAGAAGGGCCTTGTGGATGT
TGAGTCCGAGTCCGTCAATCGTAAGACCTCCAATGGTGTGGTCAGGGCAG
GGGCCTTCACTGAGGAAGGAAAGGCATTGTCTGAAGATGCAGGTAAGGAC
AGTGAGGATGATAAGAGCCTCATGCCTGGCGAGGTGCCACCAGGTAGGAC
GTTTGTCGATGTGTCTTCTGCTACTGGGAGCAGGCCAGTAGGAGACATGG
CAGAGGGGGAGTTGAGAACAGAAAATGGTGGCGATAAAGGGGTGTCTGAG
ACACCACCAGCTGCTGTGACAATCTCTGATGAGCTAAACAGTGATGGGTG
GATGGTGTCAACCAGTCGCCGGAAACCAAAAGATAACGGCCGAGAAGAAG
GTAGTAGCCGGCGAGCAAGGGGTGGTGGCGGCGGTAGTGGGAACAAGCCC
GCCAAGGATAATCAGACATCCAAGCCAAGGAGTGAGACACATCGTGAGCA
CAGGGATCATAGAGAGGGGCATGGAGAGAGG back to topCoding sequence (CDS) from alignment at C-tenellus_contig6950:2..4532- >mRNA_C-tenellus_contig6950.1.1 ID=mRNA_C-tenellus_contig6950.1.1|Name=mRNA_C-tenellus_contig6950.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=2187bp|location=Sequence derived from alignment at C-tenellus_contig6950:2..4532- (Choristocarpus tenellus KU2346) ATGTCGTCAACGCCTGGCGGCGAGGGAGAACACGGCTGGCAGAAGAGTGA CGTGGTGGACGATATTCGTTCGTGGTTCTGTAGCCTCAGCACGCATGAGC GATTGAGGGCTCTTGCTGTCGAGGATGTGATCTGGATACGCCTCTTCAAC ATTCTTTATCGCAAACACAAGTCTTGGATCCAACAGGGAGGTCGTCCCCC AACCTGGGATAAGGATAAGGTGCAAAAGATATACGATAGACTGCAGAGAA ACGAGATGAACAGGGCTGGGGCAGGGGGACTGATTGGTGCTGCAAGCCCT GCAAGTCCTACCTCCCGTTCTGTTCGCCGTATCCAGAGCTCTTCTCCATC AGCCTCTCCACAGGCAGATGCCTGCCCACCCTCTGTTGTACAGGGTGTGA CTGGAGCATTTCCAACGAGTACAGAGGTAGTAGGTGTACCTGATACCTTA GAACCAACCAAGAATCATACAGTTAGAGGAGGTAAGGAGAGCAAAGCCCA GTCTTCGAGGGGGGGTAGTGTAGAGGTAAAGGCAAGATTTGTGGCACAAC AGCTAGTGCCAGACGTATGTTCAACTTCTGTGGGAAAAACAGTATCACAG CGAAGAGGGACAAAACATAGCTCTAGTGGGAAGCCTGGAGAAACGGACGA AGCAGCAGAGGCAGTGGAGGTGAAAACAGGAGCAGGTTCGCAAGGCGGGG TGAAGGGGAGGGAGAGGGATGCATTTGGGGGCGAAGACGAAGGAGAAGGT GAGGTGGATCCAGATTCAGTGCTAAGGGCAGTAGAGCGCTTACAGGAAGC TGTGCGTCTGTGTTGTGTTGCTAGGAAAGTTTCTGGTGGTGGTTGTCTGT CGGACACACTTACCCTCAGTGAGGAGGAGCTTTCTGAACCACACCAGCTT TTGGCTTCTCTCCAGCTCTGCTCGTCTTGGGGCAATTTTGGGGGCAGGGA TGGCCATGGGGGCAACGGTGTAGGCCGGGAAAGGGGAGGATTCTTGAGCC GCCCGTTGGCTGAATCAGACGCTCGGAGGGCGGCATTGCAGCCAGCAGCA GCCCCACTGCATGAAACGACCTGGCTGGCGTCCAAGGTACCTGGAGCAAC TCTTGGAGACTTGTTGGCAAACCGCCTGGAACTCAGCTTATGGGGAAGTT ACTGGAAAAGAAGTCGATCAATGAGGTCTAGCACTACCGGTACATCAACA GGATGCACCAAGCTGTCAGCCTTGCTGGAGGAGGTATCCAAGCTATCTAG ATACTGGAAGATGCTCCCTCTTACAGATCGATTGTGGCTGCTTGAGGGTC TCCCAGAGGCTCAGGCTGCAGCATCACGGCGTGCAGCAGGAGGGAAGACT AGCAGTGATAGTCAGGGGGAACAAATAGGGGCAGATTCACACGATGATAT GAGAGATTTGCTGTTCACACCGGTATCCTGGTGCTACAAGGATGATGGTG CAGCTGTGCGACTGGCAGTAGAGAGAATTAGGACTAGCTGTGCTGATGGT GTGACTGAGGAGGTGAGGGAGCCAGGTGTAAGTGGCATTGGGGATGAAGG GAAAGGGGCAGTCCTGGCGAGGTCACCATCTCAAGCCATGAATGGCGAGG CTGGCTCAGGCGGGGGTGGTAGTGGCAGCGGGGATGGCAGTCCTGGAGAA GGTAAAGGGAAAAGTAAGAAGTCAAGACGCAGGCGTAAGAAGGGCCTTGT GGATGTTGAGTCCGAGTCCGTCAATCGTAAGACCTCCAATGGTGTGGTCA GGGCAGGGGCCTTCACTGAGGAAGGAAAGGCATTGTCTGAAGATGCAGGT AAGGACAGTGAGGATGATAAGAGCCTCATGCCTGGCGAGGTGCCACCAGG TAGGACGTTTGTCGATGTGTCTTCTGCTACTGGGAGCAGGCCAGTAGGAG ACATGGCAGAGGGGGAGTTGAGAACAGAAAATGGTGGCGATAAAGGGGTG TCTGAGACACCACCAGCTGCTGTGACAATCTCTGATGAGCTAAACAGTGA TGGGTGGATGGTGTCAACCAGTCGCCGGAAACCAAAAGATAACGGCCGAG AAGAAGGTAGTAGCCGGCGAGCAAGGGGTGGTGGCGGCGGTAGTGGGAAC AAGCCCGCCAAGGATAATCAGACATCCAAGCCAAGGAGTGAGACACATCG TGAGCACAGGGATCATAGAGAGGGGCATGGAGAGAGG back to top
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