mRNA_C-tenellus_contig694.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig694.1.1
Unique NamemRNA_C-tenellus_contig694.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig694.1.1 vs. uniprot
Match: D7FLQ8_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLQ8_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 3.720e-36
Identity = 63/93 (67.74%), Postives = 78/93 (83.87%), Query Frame = 1 
Query:    1 MNHKSGSFSINPRLQRHFVSLGCQTPTDHDLITVYNAVLENHLSSFSGEIRRMGSMLVEATIALHRTMCAKFLPTAVKFHYSFNMRDLSAVFQ 279
            MNHKSGSFSINPRLQRHFV+  CQTP D DLIT+Y AV+  HL+SF  +IRR G  +++ATI+L+R++CAKFLPTAVKF+Y FN+RDLS + Q
Sbjct: 2891 MNHKSGSFSINPRLQRHFVTFACQTPADDDLITIYGAVVGGHLNSFPSDIRRFGGPVLDATISLYRSVCAKFLPTAVKFYYGFNLRDLSCLVQ 2983
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BLAST of mRNA_C-tenellus_contig694.1.1 vs. uniprot
Match: A0A6H5KA64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA64_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 6.820e-36
Identity = 62/93 (66.67%), Postives = 78/93 (83.87%), Query Frame = 1 
Query:    1 MNHKSGSFSINPRLQRHFVSLGCQTPTDHDLITVYNAVLENHLSSFSGEIRRMGSMLVEATIALHRTMCAKFLPTAVKFHYSFNMRDLSAVFQ 279
            MNHKSGSFS+NPRLQRHFV+  CQTP D DLIT+Y AV+  HL+SF  +IRR G  +++ATI+L+R++CAKFLPTAVKF+Y FN+RDLS + Q
Sbjct:  120 MNHKSGSFSLNPRLQRHFVTFACQTPADDDLITIYGAVVGGHLNSFPSDIRRFGGPVLDATISLYRSVCAKFLPTAVKFYYGFNLRDLSCLVQ 212
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BLAST of mRNA_C-tenellus_contig694.1.1 vs. uniprot
Match: A0A8J2SDE7_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SDE7_9STRA)

HSP 1 Score: 119 bits (299), Expect = 2.080e-29
Identity = 51/92 (55.43%), Postives = 73/92 (79.35%), Query Frame = 1 
Query:    4 NHKSGSFSINPRLQRHFVSLGCQTPTDHDLITVYNAVLENHLSSFSGEIRRMGSMLVEATIALHRTMCAKFLPTAVKFHYSFNMRDLSAVFQ 279
            NHK+GSFS+  R QRHF + GCQ+ +D DL  ++ ++L+ HL SFS  ++++G  +V+ T+A+HR M ++FLP+AVKFHY+FNMRDLSAVFQ
Sbjct: 2677 NHKAGSFSVLGRYQRHFAAFGCQSSSDADLAMIFGSILDAHLESFSSSVQKVGKGIVDGTLAIHREMASRFLPSAVKFHYNFNMRDLSAVFQ 2768
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BLAST of mRNA_C-tenellus_contig694.1.1 vs. uniprot
Match: A0A482SY26_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SY26_9ARCH)

HSP 1 Score: 118 bits (296), Expect = 5.250e-29
Identity = 53/93 (56.99%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:    1 MNHKSGSFSINPRLQRHFVSLGCQTPTDHDLITVYNAVLENHLSSFSGEIRRMGSMLVEATIALHRTMCAKFLPTAVKFHYSFNMRDLSAVFQ 279
            MNHKSGSF INPRLQRHFV+  CQ P + DL T++N +L  H  SF   ++     + +ATIALH+ +  KFLP+A+KFHY+F MRDLSAVF+
Sbjct:  740 MNHKSGSFFINPRLQRHFVTFACQMPGESDLFTIFNTILSAHFFSFDKRVQNRLKSITDATIALHKEISVKFLPSAIKFHYNFTMRDLSAVFR 832
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BLAST of mRNA_C-tenellus_contig694.1.1 vs. uniprot
Match: F0XZT7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZT7_AURAN)

HSP 1 Score: 117 bits (294), Expect = 9.850e-29
Identity = 51/94 (54.26%), Postives = 74/94 (78.72%), Query Frame = 1 
Query:    1 MNHKSGSFSINPRLQRHFVSLGCQTPTDHDLITVYNAVLENHLSS-FSGEIRRMGSMLVEATIALHRTMCAKFLPTAVKFHYSFNMRDLSAVFQ 279
            MNHK+GSFS+NPRLQRHF + GCQ+ ++ DL  +Y ++L+NH+ + F     R+   LV+AT+++H+ M  +FLP+A+KFHY+FNMRDL+AVFQ
Sbjct: 2700 MNHKAGSFSVNPRLQRHFTAFGCQSSSEVDLAMIYQSILDNHVGADFPPAAARIAKPLVDATLSVHKEMAVRFLPSAIKFHYNFNMRDLAAVFQ 2793
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BLAST of mRNA_C-tenellus_contig694.1.1 vs. uniprot
Match: A0A7S3XUP8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUP8_HETAK)

HSP 1 Score: 108 bits (269), Expect = 4.860e-26
Identity = 50/93 (53.76%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:    1 MNHKSGSFSINPRLQRHFVSLGCQTPTDHDLITVYNAVLENHLSSFSGEIRRMGSMLVEATIALHRTMCAKFLPTAVKFHYSFNMRDLSAVFQ 279
            MNHK+GSFS+NPRLQRHFV+LG Q P++ DL  V+  VL +HL+ F   ++R+   +VEA++ +   +  K LP+AV+FHY F MRDL AVFQ
Sbjct:  212 MNHKAGSFSVNPRLQRHFVTLGAQPPSEEDLRLVFGQVLRHHLAPFPPAVQRLCDNVVEASVLMLAAVAQKHLPSAVRFHYVFTMRDLGAVFQ 304
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BLAST of mRNA_C-tenellus_contig694.1.1 vs. uniprot
Match: W2QRE9_PHYPN (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2QRE9_PHYPN)

HSP 1 Score: 107 bits (268), Expect = 3.190e-25
Identity = 48/93 (51.61%), Postives = 70/93 (75.27%), Query Frame = 1 
Query:    1 MNHKSGSFSINPRLQRHFVSLGCQTPTDHDLITVYNAVLENHLSSFSGEIRRMGSMLVEATIALHRTMCAKFLPTAVKFHYSFNMRDLSAVFQ 279
            MNHK+GSF++NPRL RHF +L    P+ HDL T+Y+A+L  HL+SF+ +I+++   ++ ATI L+  + A FL TA KFHY F+MR+LS++FQ
Sbjct: 2859 MNHKAGSFTVNPRLHRHFSTLCISMPSKHDLTTIYSALLNQHLTSFADKIKKLAPSIITATIDLYTEVRANFLATATKFHYVFSMRELSSLFQ 2951
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BLAST of mRNA_C-tenellus_contig694.1.1 vs. uniprot
Match: A0A6A4DGH6_9STRA (Dynein beta chain, flagellar outer arm n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4DGH6_9STRA)

HSP 1 Score: 107 bits (268), Expect = 3.190e-25
Identity = 48/93 (51.61%), Postives = 70/93 (75.27%), Query Frame = 1 
Query:    1 MNHKSGSFSINPRLQRHFVSLGCQTPTDHDLITVYNAVLENHLSSFSGEIRRMGSMLVEATIALHRTMCAKFLPTAVKFHYSFNMRDLSAVFQ 279
            MNHK+GSF++NPRL RHF +L    P+  DL T+Y+A+L  HL++F+ +I+R+   ++ ATI L+  + A FLPTA KFHY F+MR+LS++FQ
Sbjct: 2839 MNHKAGSFTVNPRLHRHFSTLCISMPSKQDLTTIYSALLNQHLTNFADKIKRLAPSIITATIDLYSEVRANFLPTATKFHYVFSMRELSSLFQ 2931
[Close]
BLAST of mRNA_C-tenellus_contig694.1.1 vs. uniprot
Match: A0A6A3XRS7_9STRA (Dynein beta chain, flagellar outer arm n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3XRS7_9STRA)

HSP 1 Score: 107 bits (268), Expect = 3.190e-25
Identity = 48/93 (51.61%), Postives = 70/93 (75.27%), Query Frame = 1 
Query:    1 MNHKSGSFSINPRLQRHFVSLGCQTPTDHDLITVYNAVLENHLSSFSGEIRRMGSMLVEATIALHRTMCAKFLPTAVKFHYSFNMRDLSAVFQ 279
            MNHK+GSF++NPRL RHF +L    P+  DL T+Y+A+L  HL++F+ +I+R+   ++ ATI L+  + A FLPTA KFHY F+MR+LS++FQ
Sbjct: 2848 MNHKAGSFTVNPRLHRHFSTLCISMPSKQDLTTIYSALLNQHLTNFADKIKRLAPSIITATIDLYSEVRANFLPTATKFHYVFSMRELSSLFQ 2940
[Close]
BLAST of mRNA_C-tenellus_contig694.1.1 vs. uniprot
Match: A0A6A3KI34_9STRA (Dynein beta chain, flagellar outer arm n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3KI34_9STRA)

HSP 1 Score: 107 bits (268), Expect = 3.190e-25
Identity = 48/93 (51.61%), Postives = 70/93 (75.27%), Query Frame = 1 
Query:    1 MNHKSGSFSINPRLQRHFVSLGCQTPTDHDLITVYNAVLENHLSSFSGEIRRMGSMLVEATIALHRTMCAKFLPTAVKFHYSFNMRDLSAVFQ 279
            MNHK+GSF++NPRL RHF +L    P+  DL T+Y+A+L  HL++F+ +I+R+   ++ ATI L+  + A FLPTA KFHY F+MR+LS++FQ
Sbjct: 2848 MNHKAGSFTVNPRLHRHFSTLCISMPSKQDLTTIYSALLNQHLTNFADKIKRLAPSIITATIDLYSEVRANFLPTATKFHYVFSMRELSSLFQ 2940
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig694.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLQ8_ECTSI3.720e-3667.74Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5KA64_9PHAE6.820e-3666.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J2SDE7_9STRA2.080e-2955.43Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A482SY26_9ARCH5.250e-2956.99Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
F0XZT7_AURAN9.850e-2954.26Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3XUP8_HETAK4.860e-2653.76Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W2QRE9_PHYPN3.190e-2551.61Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
A0A6A4DGH6_9STRA3.190e-2551.61Dynein beta chain, flagellar outer arm n=1 Tax=Phy... [more]
A0A6A3XRS7_9STRA3.190e-2551.61Dynein beta chain, flagellar outer arm n=1 Tax=Phy... [more]
A0A6A3KI34_9STRA3.190e-2551.61Dynein beta chain, flagellar outer arm n=1 Tax=Phy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig694contigC-tenellus_contig694:7446..8283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FLQ8
Preferred nameODA-DHCB
PFAMsAAA_5,AAA_6,AAA_7,AAA_8,AAA_9,DHC_N1,DHC_N2,Dynein_heavy,MT
Model size282
Max annot lvl2759|Eukaryota
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005929,GO:0031514,GO:0042995,GO:0043226,GO:0044464,GO:0120025
Exons2
Evalue6.1e-37
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota
Descriptiondynein light chain binding
Cds size282
COG categoryZ
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790002.2558246-CDS-C-tenellus_contig694:7445..75441680790002.2558246-CDS-C-tenellus_contig694:7445..7544Choristocarpus tenellus KU2346CDSC-tenellus_contig694 7446..7544 +
1680790002.2682664-CDS-C-tenellus_contig694:8100..82831680790002.2682664-CDS-C-tenellus_contig694:8100..8283Choristocarpus tenellus KU2346CDSC-tenellus_contig694 8101..8283 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig694.1.1prot_C-tenellus_contig694.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig694 7446..8283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig694.1.1

>prot_C-tenellus_contig694.1.1 ID=prot_C-tenellus_contig694.1.1|Name=mRNA_C-tenellus_contig694.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=94bp
MNHKSGSFSINPRLQRHFVSLGCQTPTDHDLITVYNAVLENHLSSFSGEI
RRMGSMLVEATIALHRTMCAKFLPTAVKFHYSFNMRDLSAVFQV
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mRNA from alignment at C-tenellus_contig694:7446..8283+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig694.1.1 ID=mRNA_C-tenellus_contig694.1.1|Name=mRNA_C-tenellus_contig694.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=838bp|location=Sequence derived from alignment at C-tenellus_contig694:7446..8283+ (Choristocarpus tenellus KU2346)
ATGAACCACAAGAGTGGGTCCTTTTCCATCAACCCACGACTACAGAGGCA
TTTTGTCTCCCTTGGGTGCCAGACACCTACTGACCATGATCTCATCACGG
TAGGAAGAGCAATTTCAATCTGCTCATCGATGTTGGTCATCTTTGTAACA
TACTGACAGAATGTAGAGCAATGGAGGAGGATGGCTGTATAGCAACACTG
TGTCCTTACCCAGTAGCCTTAAATAATTCCTTGCACAACAATAATGTATT
GTAAGCATAACCCAACTTATTTATGCATACTGTATGGTATGTTCCTTACG
TAGCTCAATGTTCGAAACAATGTATGCCATAGTATGCAATCGAAATATGG
CGCTGGCAAGTTCAAGTATCGACCTTGCAAAATATTCATGATCCCTTCTC
TCCAGCAGCCTGTGATATTGGAAATATTAAACTTTGTAACATGGTCGAAA
ACCACCTAGGTTTCATCTCCTTTCACCAATAATCCCCTACACATTCCACA
AGTTACTCTGTTAATCCTCAACTTCCATGCAGCAACTCTCTCTCTCTAAC
CCCTGTGGAAGCCTGGTTTGCTGTGAATCCTTCGCCTTTTCATGCCTCTC
CAGAGACACGATCAATCAAGATACCAATTCAAACATCTTGTATGGCATGG
ATCAGGTTTACAACGCAGTCCTAGAAAACCATCTCAGTTCTTTCTCTGGG
GAGATTCGTCGAATGGGATCTATGCTTGTGGAGGCCACCATTGCCCTGCA
CCGAACAATGTGCGCCAAATTTCTACCAACTGCAGTCAAGTTCCACTATA
GCTTCAACATGCGGGACCTCTCTGCCGTGTTCCAGGTG
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Coding sequence (CDS) from alignment at C-tenellus_contig694:7446..8283+

>mRNA_C-tenellus_contig694.1.1 ID=mRNA_C-tenellus_contig694.1.1|Name=mRNA_C-tenellus_contig694.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=282bp|location=Sequence derived from alignment at C-tenellus_contig694:7446..8283+ (Choristocarpus tenellus KU2346)
ATGAACCACAAGAGTGGGTCCTTTTCCATCAACCCACGACTACAGAGGCA
TTTTGTCTCCCTTGGGTGCCAGACACCTACTGACCATGATCTCATCACGG
TTTACAACGCAGTCCTAGAAAACCATCTCAGTTCTTTCTCTGGGGAGATT
CGTCGAATGGGATCTATGCTTGTGGAGGCCACCATTGCCCTGCACCGAAC
AATGTGCGCCAAATTTCTACCAACTGCAGTCAAGTTCCACTATAGCTTCA
ACATGCGGGACCTCTCTGCCGTGTTCCAGGTG
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