mRNA_C-tenellus_contig6936.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6936.1.1
Unique NamemRNA_C-tenellus_contig6936.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig6936.1.1 vs. uniprot
Match: D7G089_ECTSI (Similar to 3-Dehydroquinate Synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G089_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 8.870e-37
Identity = 78/132 (59.09%), Postives = 98/132 (74.24%), Query Frame = 1 
Query:  193 SSAAGKTTRPLELWLDARGKMMIHFGSLMESA------DRVVLDEATVQNNESEKLPRRWVVVQEDGRMLDESGDVVGASMVISDPKGQGRALSLVGSVDWIQVACSDWTMIPAENLVSAAGGTPTKIALQV 570
            +SAA  T+RPLELWLDARG      G++ ESA      D V+ D+ T     S    +R +VV++DG+++DE G VVGAS+ ++DPK Q RALSLVGSVDWIQV CSDWTMIPAENLVSAAGGTPT+IA+++
Sbjct:   84 ASAATGTSRPLELWLDARGAKAD--GAVSESALFQDQADTVLRDDNTTGKLRS--TSKRSLVVKDDGKLMDEKGTVVGASLEVTDPKSQSRALSLVGSVDWIQVTCSDWTMIPAENLVSAAGGTPTRIAVEL 211
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BLAST of mRNA_C-tenellus_contig6936.1.1 vs. uniprot
Match: A0A2V3HYA2_9EURY (3-dehydroquinate synthase II n=2 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2V3HYA2_9EURY)

HSP 1 Score: 82.8 bits (203), Expect = 2.840e-15
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:  349 RWVVVQEDGRMLDESGDVVGASMVISDPKGQGRALSLVGSVDWIQVACSDWTMIPAENLVSAAGGTPTKIALQV 570
            R +   EDG + D  G + GA ++I D +GQ  A +LVG VDW+ + CSDWTMIP ENLV+AA G+PT+I  +V
Sbjct:   41 RLLFADEDGSLTDAQGQIRGAHVLIDDAEGQQAARALVGMVDWLLLTCSDWTMIPLENLVAAAEGSPTRIVAEV 114
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BLAST of mRNA_C-tenellus_contig6936.1.1 vs. uniprot
Match: A0A6H5JZV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZV4_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 5.770e-15
Identity = 52/131 (39.69%), Postives = 68/131 (51.91%), Query Frame = 1 
Query:  193 SSAAGKTTRPLELWLDARGKM----MIHFGSLMESADRVVLDEATVQNNESEK------------------------------LPRRWVVVQEDGRMLDESGDVVGASMVISDPKGQGRALSLVGSVDWIQ 483
            +SAA  T+RPLELWLDARG      +  +    + AD V+ D+ T     S                                L  R +VV++DG+++DE G VVGAS+ ++DPK Q RALSLVGSVDWIQ
Sbjct:   84 ASAATGTSRPLELWLDARGAKADGAISGWALFQDQADTVLCDDNTTGELRSTSKRQGTTRPFAVASSCKRPNPLGVALTLSYMLVGRSLVVKDDGKLVDEKGTVVGASLEVTDPKSQSRALSLVGSVDWIQ 214
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BLAST of mRNA_C-tenellus_contig6936.1.1 vs. uniprot
Match: A0A7C7JCC3_9ARCH (Uncharacterized protein n=2 Tax=Archaea TaxID=2157 RepID=A0A7C7JCC3_9ARCH)

HSP 1 Score: 80.5 bits (197), Expect = 1.750e-14
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:  376 RMLDESGDVVGASMVISDPKGQGRALSLVGSVDWIQVACSDWTMIPAENLVSAAGGTPTKIALQV 570
            R+ D  G+++GA   I DP GQ  A S VGSV+W+ V C DWT+IP ENL++ AGGTPT IA+++
Sbjct:   39 RLFDRDGNLIGAHFHIDDPDGQAAARSAVGSVNWLLVECRDWTLIPLENLIADAGGTPTSIAVRL 103
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BLAST of mRNA_C-tenellus_contig6936.1.1 vs. uniprot
Match: A0A2E7SIA2_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E7SIA2_9EURY)

HSP 1 Score: 77.0 bits (188), Expect = 3.270e-13
Identity = 47/118 (39.83%), Postives = 68/118 (57.63%), Query Frame = 1 
Query:  223 LELWLDARGKMMIHFGSLMESADRVVL--DEATVQNNESEKLPRRWVVVQEDGRMLDESGDVVGASMVISDPKGQGRALSLVGSVDWIQVACSDWTMIPAENLVSAAGGTPTKIALQV 570
            +ELWL  +       G+  + AD +VL  D    +   S++L R + +  + G ++D SG  VGA + I D +GQ  A+  +G  DW+ V C+DW MIP ENLVSA+ GT TKIA  +
Sbjct:    1 MELWLYYQD------GTSSKPADALVLANDSKLPEWATSDELLRTYSL--DGGGVVDSSGRAVGAFIQIEDEEGQDAAMEFIGLADWLIVDCTDWKMIPLENLVSASDGTSTKIAASI 110
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BLAST of mRNA_C-tenellus_contig6936.1.1 vs. uniprot
Match: A0A3A5WLA0_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Poseidoniales archaeon TaxID=2163009 RepID=A0A3A5WLA0_9ARCH)

HSP 1 Score: 72.8 bits (177), Expect = 9.660e-12
Identity = 43/116 (37.07%), Postives = 64/116 (55.17%), Query Frame = 1 
Query:  223 LELWLDARGKMMIHFGSLMESADRVVLDEATVQNNESEKLPRRWVVVQEDGRMLDESGDVVGASMVISDPKGQGRALSLVGSVDWIQVACSDWTMIPAENLVSAAGGTPTKIALQV 570
            +E+W+D R + +    +L E  DR              +L    + ++  G  + E+G + GA   I D  GQ  A +L+GSV W+ V+ +DW+MIP ENL++AA GTPTKIA  V
Sbjct:    1 MEIWIDCRSEEV---DALPEGFDR--------------RLDEEHLSIK--GNKIMENGSIFGAYTHIKDNSGQVEAKALIGSVSWLLVSFNDWSMIPIENLIAAAEGTPTKIAALV 97
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BLAST of mRNA_C-tenellus_contig6936.1.1 vs. uniprot
Match: A0A2D7L867_9EURY (Uncharacterized protein (Fragment) n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2D7L867_9EURY)

HSP 1 Score: 70.9 bits (172), Expect = 1.480e-11
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:  382 LDESGDVVGASMVISDPKGQGRALSLVGSVDWIQVACSDWTMIPAENLVSAAGGTPTKIALQVIK 576
            + E+ DV  A + + D +GQ  ALSLVG +DWI V CSDWTMIP EN+V+AA G+ T++A  + K
Sbjct:   22 IGEAADV--AVVHLDDHRGQDEALSLVGMIDWILVRCSDWTMIPLENIVAAAAGSGTRVAAAISK 84
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BLAST of mRNA_C-tenellus_contig6936.1.1 vs. uniprot
Match: A0A3A5VXF0_9ARCH (Uncharacterized protein n=4 Tax=Archaea TaxID=2157 RepID=A0A3A5VXF0_9ARCH)

HSP 1 Score: 72.0 bits (175), Expect = 1.890e-11
Identity = 48/119 (40.34%), Postives = 68/119 (57.14%), Query Frame = 1 
Query:  223 LELWLDARGKMMIHFGSLMESADRVVLDEATVQNNESEKLPRRWVVVQEDGRMLDESGD-VVGASMVISDPKGQGRALSLVGSVDWIQVACSDWTMIPAENLVSAAGGTPTKIALQVIK 576
            +ELWLD R KM     S+ E     + D     ++ SE       +  EDG  + +SG+ VVG  ++I D   Q  A S++GSV+W+ V  +DW+MIP ENL++A  GTPTKIA  + K
Sbjct:    1 MELWLDERFKM----DSISEF--ETLFDRRIGVSSSSEDT-----LTVEDG--IVKSGEQVVGGHVLIKDDLSQNHARSMIGSVEWLLVEFTDWSMIPIENLIAACEGTPTKIAAIITK 106
[Close]
BLAST of mRNA_C-tenellus_contig6936.1.1 vs. uniprot
Match: A0A367I182_9ARCH (3-dehydroquinate synthase II n=4 Tax=Archaea TaxID=2157 RepID=A0A367I182_9ARCH)

HSP 1 Score: 70.9 bits (172), Expect = 4.180e-11
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:  382 LDESGDVVGASMVISDPKGQGRALSLVGSVDWIQVACSDWTMIPAENLVSAAGGTPTKIALQVIK 576
            + E+ DV  A + + D +GQ  ALSLVG +DWI V CSDWTMIP EN+V+AA G+ T++A  + K
Sbjct:   27 IGEAADV--AVVHLDDHRGQDEALSLVGMIDWILVRCSDWTMIPLENIVAAAAGSGTRVAAAISK 89
[Close]
BLAST of mRNA_C-tenellus_contig6936.1.1 vs. uniprot
Match: A0A7S0KZ43_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0KZ43_9EUKA)

HSP 1 Score: 70.1 bits (170), Expect = 1.060e-10
Identity = 47/124 (37.90%), Postives = 59/124 (47.58%), Query Frame = 1 
Query:  223 LELWLDARG----KMMIHFGSLMESADRVVLDEATVQNNESEKLPRRWVVVQEDGRMLDESGDVVGASMVISDPKGQGRALSLVGSVDWIQVACS---DWTMIPAENLVSAAGGTPTKIALQVI 573
            L LW D R      M +       +AD  V D   V            V+V     +L  SG  VG  +  S P GQ  A S VGS DWI +  S   DWTMIPAEN++SA  GTPT++A+  +
Sbjct:    7 LRLWADLRSVAPPDMAVSLRKCERAADSPV-DSVLVTGVPLLPFDDCEVIVCAPSALLMPSGQHVGVRVDASSPAGQAAAFSAVGSADWIHLDASTQTDWTMIPAENIISACDGTPTQVAVSAL 129
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6936.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G089_ECTSI8.870e-3759.09Similar to 3-Dehydroquinate Synthase n=1 Tax=Ectoc... [more]
A0A2V3HYA2_9EURY2.840e-1551.353-dehydroquinate synthase II n=2 Tax=Euryarchaeota... [more]
A0A6H5JZV4_9PHAE5.770e-1539.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7C7JCC3_9ARCH1.750e-1453.85Uncharacterized protein n=2 Tax=Archaea TaxID=2157... [more]
A0A2E7SIA2_9EURY3.270e-1339.83Uncharacterized protein n=1 Tax=Euryarchaeota arch... [more]
A0A3A5WLA0_9ARCH9.660e-1237.07Uncharacterized protein n=1 Tax=Candidatus Poseido... [more]
A0A2D7L867_9EURY1.480e-1152.31Uncharacterized protein (Fragment) n=1 Tax=Euryarc... [more]
A0A3A5VXF0_9ARCH1.890e-1140.34Uncharacterized protein n=4 Tax=Archaea TaxID=2157... [more]
A0A367I182_9ARCH4.180e-1152.313-dehydroquinate synthase II n=4 Tax=Archaea TaxID... [more]
A0A7S0KZ43_9EUKA1.060e-1037.90Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6936contigC-tenellus_contig6936:3134..5978 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G089
PFAMsDHQS
Model size597
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons3
Evalue1.15e-37
EggNOG OGsCOG1465@1|root,2QSUR@2759|Eukaryota
Description3-dehydroquinate synthase (EC 4.6.1.3)
Cds size576
COG categoryE
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790001.9905875-UTR-C-tenellus_contig6936:3133..31541680790001.9905875-UTR-C-tenellus_contig6936:3133..3154Choristocarpus tenellus KU2346UTRC-tenellus_contig6936 3134..3154 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790002.0012035-CDS-C-tenellus_contig6936:3154..34831680790002.0012035-CDS-C-tenellus_contig6936:3154..3483Choristocarpus tenellus KU2346CDSC-tenellus_contig6936 3155..3483 +
1680790002.010439-CDS-C-tenellus_contig6936:4795..49281680790002.010439-CDS-C-tenellus_contig6936:4795..4928Choristocarpus tenellus KU2346CDSC-tenellus_contig6936 4796..4928 +
1680790002.0233004-CDS-C-tenellus_contig6936:5864..59781680790002.0233004-CDS-C-tenellus_contig6936:5864..5978Choristocarpus tenellus KU2346CDSC-tenellus_contig6936 5865..5978 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6936.1.1prot_C-tenellus_contig6936.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6936 3155..5978 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6936.1.1

>prot_C-tenellus_contig6936.1.1 ID=prot_C-tenellus_contig6936.1.1|Name=mRNA_C-tenellus_contig6936.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=192bp
MVLSPIMLRDCSLLSMVALILPRVLSFAPTMRWMPSYDISSHRYIRKPTA
MSMSGLTSSAAGKTTRPLELWLDARGKMMIHFGSLMESADRVVLDEATVQ
NNESEKLPRRWVVVQEDGRMLDESGDVVGASMVISDPKGQGRALSLVGSV
DWIQVACSDWTMIPAENLVSAAGGTPTKIALQVIKKTVTCF*
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mRNA from alignment at C-tenellus_contig6936:3134..5978+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6936.1.1 ID=mRNA_C-tenellus_contig6936.1.1|Name=mRNA_C-tenellus_contig6936.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2845bp|location=Sequence derived from alignment at C-tenellus_contig6936:3134..5978+ (Choristocarpus tenellus KU2346)
GGTGTGCTCTAATCAAGGTAGATGGTGCTCTCCCCTATCATGTTGCGAGA
TTGTTCCCTCCTTTCGATGGTTGCTTTGATCCTACCGAGGGTCTTGTCGT
TTGCTCCCACCATGCGCTGGATGCCATCGTATGACATTTCAAGTCATCGA
TATATACGGAAACCAACTGCAATGTCGATGTCGGGTTTGACCTCATCCGC
AGCAGGCAAAACGACTCGACCCCTGGAGCTGTGGTTGGATGCTCGTGGGA
AAATGATGATTCACTTTGGTTCCTTGATGGAATCCGCTGACAGGGTGGTC
CTAGATGAGGCAACGGTGCAGAACAATGAGTCCGAGAAGTTGCCAAGGAG
GTGTGGAGAACAGATCGCAGCTGTGGTTGATGGTCCTGATGTAGGTCGAA
ACCATGTGCTAATATAAAATTATTTCAGGCTTGCGCTCTAATTCGTTCAA
TGTGTCCCTTGGCGTCACCTTCTGTTGTGTGTCGAGGTAGAACAGTACTT
TTCGAGGGTTTTTGCGTTGGTCTCCCGTAACTTTGTGCATGAACGTAATC
TCCCCTCGATGCTCTTTGCTCACGCTGATGTTGGAAACGCGACGGTTCAT
AGAGCATCCAAGCGCTAGAATTGGAACGATTGTGAAATTGGAAGGTGCAA
TTTGTCGTGCTCATGCGTACACCAAACTCCTCTTTGGAATTAACAGAGTT
GCCCTCACTTCCACATCATTGATAGTGTTGAGTAGTATTCGGGTTTCCTT
TTGTGTACAGTTGAATTTATGTAGCTCGGAGTTCAGGAATTGAGCAAACT
TGTTGGAATTAAATTAATGTAATTCACAAAGTATATGAGGGTTATTCCAC
GCACAAAATGCTTTGGAGTATTTTGTGGAGACCATGTCAGTCCTATAGTG
CTCATATAATGTTGGGATCCAAACGAATCTCAGTTGGGAACGTAACCTGT
CATATTAGCGATGACAGCAAATATTGTTTGGAAATTGAGCTACAGCGCCT
GCGGGCCTTATTGTGGTGGGGGGGCGTTCGTTGATTCTCAAAGGCCACCT
TCGAACCGCTTGTTGATTCAGTTTGATTGGTCAGTCTAGCCATTCATTGA
AAAGTGTTCAGGTGACTCGAACCTACGCTATCAGCATTGCTACTGTACAT
GTTCCAGGTCTTGTGTACTAGCAACGACTTGCTGAAAGGGGGATGATATA
GAGGTGATGTTACTGGTCCCACAGAGTTCGGACACAGCTGTGAACCACAT
CCTGTTCAAATCAAATCCTTTCAAGATAGTAGTAGTATTCCACGAGTACT
CAATGAGACAAGTGAACATGTTGCATTCTAAATACATGTAGGGTCTAGTA
AAATCTTGTATGGATCCTTCTCTTTTTCATGATGTATCAATCTAGAAATG
CGTGCATTGGGCATACACAGTCCAATGATGAGTGCGCATTTACAAGAGAC
TGCTCAGTACAATCCCCTTCACTTACGCATCATCTCTTGTTACTAGTCCG
CACCCATAAAATCTCATGCCCACTTAATTCAACCTTCTACCTGACTCACT
CATCGCAGCTGCTGTCCAGTTCTCCATGTAGCCCTACCCTTTCTTTGGCG
CCCCTTGAAACTATTAAGGTCTATACTGATGACTGTTAATAACGACTCGT
AATGCCCTGAAGGTGGGTTGTAGTGCAAGAAGATGGTCGTATGCTTGATG
AATCGGGAGACGTTGTTGGAGCATCGATGGTCATCTCCGACCCCAAGGGA
CAGGGTCGTGCTTTGTCTCTCGTAGGGTCTGTCGACTGGATACAGGTACG
CCACTAAAGGGTATGCCATTCGAGGTGTTTTTGAAGTACAATTCTCTGCA
CACAGTGGCAGTAGAGCCACGATGTTTTATGGAGGACCACCTGCACCTAC
TGTGCAAGCATTGCACACATCCCATTGGACACTGGGAGAAGAGTCATGAA
ACCTACCTACCGTAGACCCCCGTTCGCAAGAACACTGTCCTTCACCTGTA
TTCTCAGAGAGGAAGGTCCGGGCCTGTTCCTTCCTTTTCACCCACTGAAT
ATCTATCGTACAGAGAGCCAGAGAGGAACATGGCAATCCTCGGGATGTGA
CATACCAAGAAGGCTTTGTACGACTTTGAAGAAGGGACAACTTCTTTGTG
GTATTTAACCCCTACTCCACGTCCCTTGCCAGTTAAATAATGTCATCCAG
TGCCATATGGAGGTTGAGTTCGAATAGCTCCATCTGACTGGCTGTTCGAC
ATAAGCGATTCTGCTGCTTTCGGTTCTGTTCCAATACACTTCCCAGAATA
CTTACAGAATTTTATTACCTCCAATCGTTAAAAAAAAAAATCACCACGAT
TCACATTGAACGTAATTTTTCTTATGTACTGAAAAAGAGGTGTACCTTTT
ATTTTGACGGGATTCAAATTGCCATCTTTTATTTTTTTTATTCCATCTCG
AGCTAAGCCAGTCCTATTGTTGATTTTTTATTTATTGACAGGCGTTTGAT
GCCGTACATTACCGTAATGATCATATATAGCTTTTTGTCTCAACGCAACC
CAAGAGTTGTCTCATCAACATCATTTTTTTTTAATGTGACCCGCTTCTTC
TCGATATCGCCATCACTACCATTTAATCTCATCAAAACTCTATTATTTTT
ATTATAAACACCGTAGAAATTACGGTCTCATTGTTTTGTTTTCTTTTTTT
CTTTTTTTGATGCATGGTGCGAGTCACTCAGGTGGCGTGCTCGGACTGGA
CTATGATACCGGCTGAAAACCTTGTGTCAGCGGCAGGGGGCACTCCCACC
AAGATCGCCCTGCAGGTGATAAAAAAAACTGTCACGTGTTTCTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig6936:3134..5978+

>mRNA_C-tenellus_contig6936.1.1 ID=mRNA_C-tenellus_contig6936.1.1|Name=mRNA_C-tenellus_contig6936.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=576bp|location=Sequence derived from alignment at C-tenellus_contig6936:3134..5978+ (Choristocarpus tenellus KU2346)
ATGGTGCTCTCCCCTATCATGTTGCGAGATTGTTCCCTCCTTTCGATGGT
TGCTTTGATCCTACCGAGGGTCTTGTCGTTTGCTCCCACCATGCGCTGGA
TGCCATCGTATGACATTTCAAGTCATCGATATATACGGAAACCAACTGCA
ATGTCGATGTCGGGTTTGACCTCATCCGCAGCAGGCAAAACGACTCGACC
CCTGGAGCTGTGGTTGGATGCTCGTGGGAAAATGATGATTCACTTTGGTT
CCTTGATGGAATCCGCTGACAGGGTGGTCCTAGATGAGGCAACGGTGCAG
AACAATGAGTCCGAGAAGTTGCCAAGGAGGTGGGTTGTAGTGCAAGAAGA
TGGTCGTATGCTTGATGAATCGGGAGACGTTGTTGGAGCATCGATGGTCA
TCTCCGACCCCAAGGGACAGGGTCGTGCTTTGTCTCTCGTAGGGTCTGTC
GACTGGATACAGGTGGCGTGCTCGGACTGGACTATGATACCGGCTGAAAA
CCTTGTGTCAGCGGCAGGGGGCACTCCCACCAAGATCGCCCTGCAGGTGA
TAAAAAAAACTGTCACGTGTTTCTGA
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