mRNA_C-tenellus_contig6921.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6921.1.1
Unique NamemRNA_C-tenellus_contig6921.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig6921.1.1 vs. uniprot
Match: D8LHK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHK8_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 5.740e-7
Identity = 42/105 (40.00%), Postives = 54/105 (51.43%), Query Frame = 1 
Query:  565 GTGQEQPSGPTGMDLEVMPMSELWFGYRKYRLVVCLDMSSSMLEQQCWTCVLDQERRGMPLMHLLEASMDIIQGVVAPMGLADGNLGNAAG-----GVCEELYVS 864
            GTG   P       LEV   S LWF +RKYRLVVCLD+S+SM   + W         G+P+   +  +M  IQ +VAP+  A    G A       G+ EE+YVS
Sbjct:  232 GTGASSP-------LEVSSRSVLWFAHRKYRLVVCLDLSTSMCTGRWW---------GIPVELFVNNTMKYIQALVAPITDARQQQGAAQSPSSRMGIAEEVYVS 320
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BLAST of mRNA_C-tenellus_contig6921.1.1 vs. uniprot
Match: A0A6H5KTQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTQ7_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 3.500e-6
Identity = 37/91 (40.66%), Postives = 51/91 (56.04%), Query Frame = 1 
Query:  607 LEVMPMSELWFGYRKYRLVVCLDMSSSMLEQQCWTCVLDQERRGMPLMHLLEASMDIIQGVVAPMGLADGNLGNAAG-----GVCEELYVS 864
            LEV   S LWF +RKYRLVVCLD+S+SM   + W         G+P+   ++ +M  IQ +VAP+  A    G A       G+ EE++VS
Sbjct:  235 LEVSSRSALWFAHRKYRLVVCLDLSTSMCTGRWW---------GIPVELFVKNTMKYIQALVAPITDARQQQGAAQSPSSRMGIAEEVHVS 316
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BLAST of mRNA_C-tenellus_contig6921.1.1 vs. uniprot
Match: A0A836C7M7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7M7_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 7.040e-5
Identity = 50/186 (26.88%), Postives = 74/186 (39.78%), Query Frame = 1 
Query:  265 IKEAIVLVSDASLFAVRERAQWHLGCMHA-SPFGRRTRTSEDQPKQAHLPSAHLAGDFDIGGNLSLVETLMCDLVPPGRRRRQRGHTESASLAAD--------------------------------GSDKSFGTGQEQPSGPTGMDLEVMPMSELWFGYRKYRLVVCLDMSSSMLEQQCWTCVLD 723
            + EA+VLV D+S + V ERA WHL C+   SP          Q     +    LAGD     +L L++  +       RRR +R    +   +AD                                       +G +     +   L ++P S+LWF + KYR+V  LD+S+SML Q  W   +D
Sbjct:   17 VAEAVVLVPDSSRYGVNERALWHLRCLQTPSPI-------VQQGDGDCVLVNKLAGD-----DLHLLDVQLRAGASAVRRRGRRADVRNRHSSADLRAVAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASGGDSSITASSTSLAIVPGSQLWFVFAKYRIVFALDLSTSMLAQNHWALPID 190
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6921.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LHK8_ECTSI5.740e-740.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTQ7_9PHAE3.500e-640.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C7M7_9STRA7.040e-526.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6921contigC-tenellus_contig6921:3819..5645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size865
Hectar predicted targeting categoryother localisation
Exons4
Cds size756
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790001.560906-UTR-C-tenellus_contig6921:3818..39261680790001.560906-UTR-C-tenellus_contig6921:3818..3926Choristocarpus tenellus KU2346UTRC-tenellus_contig6921 3819..3926 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790001.5742495-CDS-C-tenellus_contig6921:3926..40881680790001.5742495-CDS-C-tenellus_contig6921:3926..4088Choristocarpus tenellus KU2346CDSC-tenellus_contig6921 3927..4088 +
1680790001.588797-CDS-C-tenellus_contig6921:4359..44631680790001.588797-CDS-C-tenellus_contig6921:4359..4463Choristocarpus tenellus KU2346CDSC-tenellus_contig6921 4360..4463 +
1680790001.6039793-CDS-C-tenellus_contig6921:4709..51181680790001.6039793-CDS-C-tenellus_contig6921:4709..5118Choristocarpus tenellus KU2346CDSC-tenellus_contig6921 4710..5118 +
1680790001.6153147-CDS-C-tenellus_contig6921:5564..56451680790001.6153147-CDS-C-tenellus_contig6921:5564..5645Choristocarpus tenellus KU2346CDSC-tenellus_contig6921 5565..5645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6921.1.1prot_C-tenellus_contig6921.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6921 3927..5645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6921.1.1

>prot_C-tenellus_contig6921.1.1 ID=prot_C-tenellus_contig6921.1.1|Name=mRNA_C-tenellus_contig6921.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=252bp
MAIESMDVVLKSPARNRRRPPLDSPSRRRARAHGAGRQEQTSAGDDDASQ
LAIKEAIVLVSDASLFAVRERAQWHLGCMHASPFGRRTRTSEDQPKQAHL
PSAHLAGDFDIGGNLSLVETLMCDLVPPGRRRRQRGHTESASLAADGSDK
SFGTGQEQPSGPTGMDLEVMPMSELWFGYRKYRLVVCLDMSSSMLEQQCW
TCVLDQERRGMPLMHLLEASMDIIQGVVAPMGLADGNLGNAAGGVCEELY
VS
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mRNA from alignment at C-tenellus_contig6921:3819..5645+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6921.1.1 ID=mRNA_C-tenellus_contig6921.1.1|Name=mRNA_C-tenellus_contig6921.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1827bp|location=Sequence derived from alignment at C-tenellus_contig6921:3819..5645+ (Choristocarpus tenellus KU2346)
CTATATACTTACGCTTGAACAAGGTGTGATATCTGAGAAGGTGTAGGGAT
CCTACTCTCTTTTCCATTGGCATAATGACCTGGTAAACCTATTCTGTATT
TGTGAAGGATGGCTATAGAATCAATGGATGTTGTATTGAAGTCCCCTGCC
AGAAATAGGCGGAGACCTCCACTAGACTCCCCAAGCAGGAGGAGGGCAAG
GGCTCATGGTGCAGGCCGCCAAGAGCAGACTTCTGCTGGAGATGACGATG
CCTCACAACTGGCGATCAAGGTTGGTCTGGTAGATCCTGGATGGAGGAAG
AACAGTCATCACTAACTTCAAATTTGTCATAGCAGATGTCTTGTGCTATA
TATAGATAGTACTGTGCAACTATTGTATCATTTGTGTGCACCAGTGCTTC
CATCCATAGCCCTGGGACATCATGACATCAACAAGCCTCGAGCGCTACTG
TGTAGATGATGGTAAAAGTGGGTAGAGTAGGTCATACCTTATGTTACCTC
AGTGCTTAATGTACCCCATTCCAATGTTCATATTTGGACAGGAAGCGATC
GTTCTGGTATCTGATGCCTCTCTCTTCGCAGTGAGAGAACGAGCTCAGTG
GCATCTGGGCTGCATGCACGCATCTCCATTTGGGCGTCGCACTAGGTGAG
TAGACTGGAGGCTCGAGTAATAGCACTACACACAATCAGAGGTTCTCGAT
GTTCCATGAATTCCCCATCATCAACAATATCTCCGAAGAGGACACGAAAA
ATGCTTATGGACAAGTCTGTTGCCGCAGAGGTAGTTCCATTTTTTTACTT
CATCTGTGCGACTTAGCAGCTTTTCCTCTTATCCTGTACCTGTTTGTCCC
CTTTATTCCCCCTTCAATACAACCCCAACTCACCCCCCCAGGACATCTGA
GGATCAACCCAAACAAGCCCACCTACCATCGGCTCACCTAGCTGGAGACT
TTGATATTGGTGGTAACCTCTCACTGGTAGAAACCCTCATGTGCGACCTG
GTTCCTCCGGGTCGACGCAGGAGACAACGTGGACACACAGAGTCAGCATC
CTTGGCTGCGGACGGTAGCGACAAGTCTTTTGGCACTGGTCAGGAGCAGC
CGAGTGGACCCACAGGAATGGACCTGGAAGTCATGCCCATGTCAGAACTG
TGGTTCGGGTACCGCAAATACCGCCTGGTGGTTTGCCTGGACATGAGCTC
CAGCATGCTGGAGCAGCAATGCTGGACCTGTGTGTTGGACCAGGAGAGGA
GAGGTATGCCCTTGATGCACCTCCTTGAGGCATCAATGGATATCATCCAG
GTAATGAGTTAGGTGGGCAGAGGAAAGAATTAATAATATGCGATTGAGAG
GTGGGAGCATGATGATGTGTTCGTCCCTGGTACCTTTCGCTCAATACAGA
GTTGCCATCCTTTTGCCAGTTGCGCCCATGGCATATACAACAGCAAGCAA
TGTTAGCATGTGCTGCAACAGCTCCAAGTCAAGCCAAAATTACAAGGCAG
TGCAGCTGAAGATCAGTATTTCAGTTCATGACCTGTCTAGAGCATGCAGT
AGCCTATCCATGCCTCCTCTCGCCCAAGCGAAATCTTCCATTACACTATT
TTTGTCTGTAGTAGGCCTTGAGAGGGCTCCACAATATTGCTGTAGTCCTT
ACTCAAAAGTGCAGGGCTGCTGGAGCTCAGAAAGACTCGGCACCTCCAGG
GCATATTTCTTGTTGCAACTGTACCAATGTGTGATCTGTGCTGCAGGGAG
TTGTGGCTCCCATGGGATTGGCTGATGGCAACCTGGGCAATGCAGCTGGA
GGTGTCTGTGAGGAGTTGTATGTGTCT
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Coding sequence (CDS) from alignment at C-tenellus_contig6921:3819..5645+

>mRNA_C-tenellus_contig6921.1.1 ID=mRNA_C-tenellus_contig6921.1.1|Name=mRNA_C-tenellus_contig6921.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=756bp|location=Sequence derived from alignment at C-tenellus_contig6921:3819..5645+ (Choristocarpus tenellus KU2346)
ATGGCTATAGAATCAATGGATGTTGTATTGAAGTCCCCTGCCAGAAATAG
GCGGAGACCTCCACTAGACTCCCCAAGCAGGAGGAGGGCAAGGGCTCATG
GTGCAGGCCGCCAAGAGCAGACTTCTGCTGGAGATGACGATGCCTCACAA
CTGGCGATCAAGGAAGCGATCGTTCTGGTATCTGATGCCTCTCTCTTCGC
AGTGAGAGAACGAGCTCAGTGGCATCTGGGCTGCATGCACGCATCTCCAT
TTGGGCGTCGCACTAGGACATCTGAGGATCAACCCAAACAAGCCCACCTA
CCATCGGCTCACCTAGCTGGAGACTTTGATATTGGTGGTAACCTCTCACT
GGTAGAAACCCTCATGTGCGACCTGGTTCCTCCGGGTCGACGCAGGAGAC
AACGTGGACACACAGAGTCAGCATCCTTGGCTGCGGACGGTAGCGACAAG
TCTTTTGGCACTGGTCAGGAGCAGCCGAGTGGACCCACAGGAATGGACCT
GGAAGTCATGCCCATGTCAGAACTGTGGTTCGGGTACCGCAAATACCGCC
TGGTGGTTTGCCTGGACATGAGCTCCAGCATGCTGGAGCAGCAATGCTGG
ACCTGTGTGTTGGACCAGGAGAGGAGAGGTATGCCCTTGATGCACCTCCT
TGAGGCATCAATGGATATCATCCAGGGAGTTGTGGCTCCCATGGGATTGG
CTGATGGCAACCTGGGCAATGCAGCTGGAGGTGTCTGTGAGGAGTTGTAT
GTGTCT
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