mRNA_C-tenellus_contig692.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig692.1.2
Unique NamemRNA_C-tenellus_contig692.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig692.1.2 vs. uniprot
Match: D7FM23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM23_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 4.200e-21
Identity = 64/122 (52.46%), Postives = 79/122 (64.75%), Query Frame = 2 
Query:  887 SGKEASVVVERLGGNMMSLHAEPAPDRDSGTMGEGVGEY---SELAFQTETMKADGDAQPLLVQYFKSIVRAAANP-----------------EELHDCIVCLGPMEVPRSLLQALAAPLHD 1192
            SGKE+++VVER GGNMM+L+AEP     S  MG G G     SEL+F T  MKAD DA+ LL +YF+SIVRA+++P                 +EL DCIVC+G M+VP SLLQ LAAPL D
Sbjct:  153 SGKESALVVERYGGNMMTLNAEP-----SAVMGGGDGPVPPESELSFTTHVMKADDDARTLLGRYFQSIVRASSDPSPQAYSRYCRVTSSRVSKELQDCIVCIGAMDVPLSLLQELAAPLPD 269
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig692.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM23_ECTSI4.200e-2152.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig692contigC-tenellus_contig692:2249..6670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2551
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_010370.1
Cds size615
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig692.1.2prot_C-tenellus_contig692.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig692 3012..5497 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790001.4550567-UTR-C-tenellus_contig692:2248..30111680790001.4550567-UTR-C-tenellus_contig692:2248..3011Choristocarpus tenellus KU2346UTRC-tenellus_contig692 2249..3011 +
1680790001.5305839-UTR-C-tenellus_contig692:5497..66701680790001.5305839-UTR-C-tenellus_contig692:5497..6670Choristocarpus tenellus KU2346UTRC-tenellus_contig692 5498..6670 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790001.4735913-CDS-C-tenellus_contig692:3011..32841680790001.4735913-CDS-C-tenellus_contig692:3011..3284Choristocarpus tenellus KU2346CDSC-tenellus_contig692 3012..3284 +
1680790001.4836411-CDS-C-tenellus_contig692:3554..36261680790001.4836411-CDS-C-tenellus_contig692:3554..3626Choristocarpus tenellus KU2346CDSC-tenellus_contig692 3555..3626 +
1680790001.492407-CDS-C-tenellus_contig692:4025..41301680790001.492407-CDS-C-tenellus_contig692:4025..4130Choristocarpus tenellus KU2346CDSC-tenellus_contig692 4026..4130 +
1680790001.520551-CDS-C-tenellus_contig692:5332..54971680790001.520551-CDS-C-tenellus_contig692:5332..5497Choristocarpus tenellus KU2346CDSC-tenellus_contig692 5333..5497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig692.1.2

>prot_C-tenellus_contig692.1.2 ID=prot_C-tenellus_contig692.1.2|Name=mRNA_C-tenellus_contig692.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=205bp
MSSPHWVKVSGGGVPASVFRPLVGHSLRRLPNVVCPLRSSQSGKEASVVV
ERLGGNMMSLHAEPAPDRDSGTMGEGVGEYSELAFQTETMKADGDAQPLL
VQYFKSIVRAAANPEELHDCIVCLGPMEVPRSLLQALAAPLHDVTGREVK
RVSSPACKPSLQTGCAGFMYCPPPTTLPREPRSYDGATPMASPHSLHQGH
PPPS*
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mRNA from alignment at C-tenellus_contig692:2249..6670+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig692.1.2 ID=mRNA_C-tenellus_contig692.1.2|Name=mRNA_C-tenellus_contig692.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4422bp|location=Sequence derived from alignment at C-tenellus_contig692:2249..6670+ (Choristocarpus tenellus KU2346)
TTTCAGGGTCACTTCGCTTATGCTGCTCGTGGTGGTTGCACAGCCTCTCT
GGGCGTACTGGCTTGTGGTTTGCCAGTTGATCCTGTGAGTGTTGTTTGTT
TTGAAACAAGTGCCAATTTGCTACTAAATATAATACACACTTGCGTATTC
AATGCACTAAGTGGGCTTTGAGGCTGTTGCTTCCACTGTGTGATAGCAGT
CGTTGGATTCTTTCCTCTGTCTTCTGTCCAAGAGTACCAGCACTTTGCTC
TGGGTGGGAAGGGATAACACGCCACTGAGCATATGGTATTTTCTCTCTTC
GTTCTCAATCGAGACTCCAAAGCTGTGCTGTGTTGGAGATAAGCTCACAC
ACTAAGCCCTTCTTCATTGCATTTGCATATTCTCCACTATTTCCTTATAT
CTGTCTTTTGTCCAGTGTATGCAGTGCTGCCATGGGGGGTTTGGACGTTA
CAGGCTTACCTTCATTCACCACGAGGTCAGTCTAGACGAAAATACTTCAC
AGACAAGAGGATTCGATATTCGCTGTGGGATGCTTAGTTAGAGGCTCTAC
TTGCAAACCCCTCTACACTAGCCCTTTGCGACCACAATATTGTACTTTGG
ACAGAAACCAGTTCCAAAATCCAAATCTGTGTAGGAGTCCCTCCCTACGT
CTAAGCAGGCAGCATCATCGATTTGCCATCGATTTTAGTACTAGATGCAA
AGCAGTTGAAGCCTCTAGCCTAAATGTTTGTTTGCTTCCGGACGAAAGGG
AGGTACTAGGGGCATGAGCTCCCCTCATTGGGTCAAAGTATCTGGGGGGG
GGGTGCCGGCGTCCGTTTTTCGCCCATTAGTTGGTCATTCGCTTCGACGC
CTCCCTAACGTGGTTTGTCCACTCCGATCATCACAGTCGGGCAAGGAGGC
CTCTGTTGTAGTCGAGAGACTCGGAGGGAACATGATGAGCCTACACGCGG
AGCCAGCGCCAGATAGGGATAGTGGTACTATGGGAGAGGGTGTGGGAGAA
TATAGTGAGCTGGCGTTTCAGACCGAGACTATGAAGGTGAGTTATGCTAG
CTGGGATGATTTTTCGCTTGTTTTTCGCCCTTCAGCCACCGTCTGAAACA
TTGATCCTTTATGATTTGAATATTTAGGCTGTTCCTGTGCCCTTTGATCC
TGGTTTGCTCTTTGTTGGATTTTATTTATTTTAAGTGTGTGAGTGTATGT
TTTGTGGACGTTTGCGGTAGTTCCATCCATGAGTTTGATCCTACACTCTC
TCTTCCTGCCCAACACCTGTTCCTATTTTGCTGCCCTTTCTTCTCCCCTC
CTAAAGGCGGACGGGGATGCGCAACCTCTGCTAGTGCAGTACTTCAAGTC
AATCGTCCGTGCTGCAGCCAACCCAGAGGTAAAAAGATTTCATGTTGGGA
TTGCAGCTTGGTGTAAGGCGTGTTATTATTTCTGGTAGTACAACCCTCAC
TATTGTGGTGCTTGTTCGGCATTGCTTGATAATTCCTGCCATGATAACCT
GCATCTTGGTACAAGGTAGAAGGTGGTATTGATATTGTGGAGGCACTGAG
TTGCTGAAGATTTTGGTTCCTCTTTCTGCTCAGCTGGCATGATTGTTGTT
GGCGTATGATGTCCAATGGAAGGATTCATGAATTGTTGCATCTCAGGTAT
ATCTACAGCACCTACACACATGAAAATGACTGTCTTCCAATCAATACTTC
ATGTGGATGTTCGTCTGGAAATTCTTCAGTTTAATTGTGACCTAACCTGA
TACTTACCTTCTTCTGTCTTCCTTAAGGAATTGCATGATTGCATTGTCTG
CCTGGGACCCATGGAGGTACCCAGGAGTCTACTACAGGCATTGGCGGCCC
CACTGCATGATGTGACAGGGAGAGAAGTGAAGGTGTGTGCTCTCTATGCA
AGTAGTGTCATAGTGATTCCATGTAACCCACATATTTTTTCCCTGTATGC
ATCAATTTTTGTTGCATTTTGCATTCTGTCCTGTTTTTATTGTATTACAT
TGTTTTCATGTTTGTGTTGATTTAAGGACATTCAGGTGTGGAGATTTTGT
ACAACAGTGCAGTGAAATGTAATGTTGCAGTTCATCTGCTGCTTTCAAAA
ATAGGAATTTTAGATGTTGCCCTGATTTTGCATCTTCTTTGTTGCTACAG
TATTCTTTTGTGGTATGGTGAAGTCATATTTTGAAAATGTGATTGGTGCT
TGTTTTAGTCAATGAGTTACATTGCTGCTGTGGAATGAGAACAAGGCATT
GTTTGGTGTAAGGTGTCCTTGCTATGATCAATGCTTTGCTTCCCAAAACA
CTGTCCATCAATTCGAGACTGTGTGTCGATTGACTTGGTTCTATCTTGGG
ACGTACTGACGAGTAGTAAATAGCGGTTGACAAATCTTCTTGTGAAATGT
ATTGCTGTTTTATGAGACTCAAAGGTTATCCCCTCTGCAAGTACTACATC
TTTTGGTTATTTTGGTGTTCTGTATATAGTATATATTTATTGGTTCCAGT
TTGCTTGAATGATTTGTGATGCACCTATTTTATGATAAAAGAAAGGTATT
GCTCAGTACTTTCAATCCTCAGGGGAATTTAAGTAGAAGATACAAAATAT
ATCAAATTAATATATCAGAAATACCTTGTTGTGGCTCAAAGTAAAATCCA
TTTGTTGCAGAAACTAGAAGTTCACTGATCCTTGAGTCACTGTTCAAAAG
TGGTGGGTGTAGAAAAGGTAGGGCATGGCTAACATGCATTTTGTTCTGGA
AGCTGCTTACCTCCAACCTTTGGAACCCCTTCATTGCACATAAAACCCGA
CCTACGCCTACATGATAAAGCAAGTTTACAAGGTTGTTTCTGTTGGGGCG
AGATCTCTGTTCAAACCTTGGTGTCAAAATACGAGAGTTAGCCCTGAATA
CTAAATATGTATATATATATATTTGTCTAGCATCATCCACACTTTACTCC
CACATTTAAGTAACAAGGGAGTATTCCCGGTGAATCAACAGCCATATAGA
AACCATGTAAGGTAACTTCTGAAACAATTACCATTTCGTTTTCTCTTCAC
CCCCTCCCTCTTCACCAATCTGGGCCTATCTCAGCGTGTGAGTTCTCCAG
CATGCAAGCCATCTCTGCAGACTGGCTGTGCAGGTTTCATGTACTGTCCT
CCTCCCACCACGCTCCCAAGGGAACCCAGGAGTTATGATGGTGCCACGCC
TATGGCCTCACCTCATAGTTTGCACCAGGGTCATCCACCACCTTCATGAC
TTCAAGTCTGAGGAGAGGCGGGGGATTACTTGTATTTGTTTTTTACCCTA
CAGCACTTGGCTCTATCCTCTACAGGCATGAGGCCATGGTTTGAACACTG
TGCATATTCCTTGGATATTTGATAGCTAGACTGTATGGTGGAACCCCTTG
GAAGATGGGGCATTCGATTTTTACGAGAGTATTGCACTTGGTATGAATAG
GATTGAGGGGGAGAGGGTCCATGCCTGTTTCTGGACTCTGGTGTTGTTGT
AGTAGGATTTTTTTGTGTGAATGTTGTGTGGATTGCTGTGAGGTCTATGA
CGCAAAAACTACAAGTCAGGTTTTCATATACAGGGCCACCTCCCTGTGGT
TAAGTGTCCTGACAGTTTCATCTGTACCATTTTGAATGCGTTGAAGAGTT
TTCATGTTTTTATTCAGTCACTGCATTTTGTGAAAAGAGGTATGTCCCAA
GTGGGCACATATGGAAAGAATGGGGTTGGGCAGAGATGTGATTTGTGTTC
AGTGAGTTTGAAGCAATTGATGGAATGGCTGCTGGGTCACGGAATGGGCT
ATGAGGGTGGAGGAGGCAGTGCTTTTTTCAAGGATGTGGATAGGAGAAAA
AAAATGTATGTTTTTGCAAAATATCAACTATCCATTTCTACTGTGCCCTC
GAATGTTGTGCAGTGTGTTTTGACTTGTATATGGCACTGTGGTTTGGGGG
CATGAGCTGGAAGCTTCTAGCCCCTAGCCCTTGTGGTGCCTTGTTGATGT
TGTAGCTGAGAATTACCTCACTCCAGTGTACCTATGCAATAAATTGTGGG
TGCCATGGCTTACTATAGTAAGACATAGCTGTGGTTGATGTTACCTCCCC
AACTGCTGCATAGGTTTTGGCTTTGATGGACATCCATCAAGACAATAGGG
ACGCTAGTTGTCAACATGATATCTTGGATTGAATTTCGTATTGTGCCTAG
TGGAGGTGTTGAGGCAAAAGGGAACAGCAAAGCTGTTCTCTCAGTGTACA
AGCTTGTGGGAACATTACAGAGAAGGCATAGGTCTTCAAGACTTTATTAT
GCATAAACGATAGTTCTTGTGTAAACAAAGTATGGACAGACTTCATGGTT
AAAGAAAGCAGTGTTAATGGTCTTTTTCACTCCTTTAAAAAAAAATTATA
TTGTGCTTTCACAATTGAGCAG
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Coding sequence (CDS) from alignment at C-tenellus_contig692:2249..6670+

>mRNA_C-tenellus_contig692.1.2 ID=mRNA_C-tenellus_contig692.1.2|Name=mRNA_C-tenellus_contig692.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=615bp|location=Sequence derived from alignment at C-tenellus_contig692:2249..6670+ (Choristocarpus tenellus KU2346)
ATGAGCTCCCCTCATTGGGTCAAAGTATCTGGGGGGGGGGTGCCGGCGTC
CGTTTTTCGCCCATTAGTTGGTCATTCGCTTCGACGCCTCCCTAACGTGG
TTTGTCCACTCCGATCATCACAGTCGGGCAAGGAGGCCTCTGTTGTAGTC
GAGAGACTCGGAGGGAACATGATGAGCCTACACGCGGAGCCAGCGCCAGA
TAGGGATAGTGGTACTATGGGAGAGGGTGTGGGAGAATATAGTGAGCTGG
CGTTTCAGACCGAGACTATGAAGGCGGACGGGGATGCGCAACCTCTGCTA
GTGCAGTACTTCAAGTCAATCGTCCGTGCTGCAGCCAACCCAGAGGAATT
GCATGATTGCATTGTCTGCCTGGGACCCATGGAGGTACCCAGGAGTCTAC
TACAGGCATTGGCGGCCCCACTGCATGATGTGACAGGGAGAGAAGTGAAG
CGTGTGAGTTCTCCAGCATGCAAGCCATCTCTGCAGACTGGCTGTGCAGG
TTTCATGTACTGTCCTCCTCCCACCACGCTCCCAAGGGAACCCAGGAGTT
ATGATGGTGCCACGCCTATGGCCTCACCTCATAGTTTGCACCAGGGTCAT
CCACCACCTTCATGA
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