mRNA_C-tenellus_contig6916.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig6916.1.1 vs. uniprot
Match: A0A6H5L389_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L389_9PHAE) HSP 1 Score: 318 bits (814), Expect = 5.280e-96 Identity = 187/408 (45.83%), Postives = 247/408 (60.54%), Query Frame = 3 Query: 273 NPVDDCMNLGAAGFGWCMLLWVFGCLSLLLNFARQSDYDEGNSTSTRSSGFRWGIFHV----QDSDGPPWLAFAPFWLGDIVGFAFLVRLICKVAGVRLAGPTR-RGTRRYGTREDSGGASGDL-------------RL----VNVDYFPLLQRVVVTWISSLLLLITLTVEQVLVCLQWGGGSEAPG---SLAVATPLLIIEFCCLLRVVLIRYHGWFSGLTCLLLLLLTLLVALRSNPTAPF--------LEDVPWLECLAPLWALNLLFLAAAGYLLANICLRRYLLTRVQTVCFTLYCISLVASIFAQVLLIGDERLGVSDLEV---QIFRLDLPLLLGLFALTVFCLASYLSVEHTISRLIISHGYEDPVPLSKTVSGWEWSGAGTTRWGLLGDISLRAGPRV 1388 NPV+DC+ GAAG GWC+L W G + L+L +A+ RWG + + + P WL F+PFW+GD + LVR++ KV +R PTR RG RR R S G+ DL RL + +DYFPLLQRV+ T + + L+L+ T +QVL+CL+WG ++APG L +A PLL++E LLRVVLIR GW SGLT LLL LT+LVALRS + L+ PW ECLAPLWA++LL+ AGY+ AN R+++ Q +CFTL +LV S A++LL GD RL +V + RLDLPLLL + +L FCLA +LSVEH++S LI +HGY+DP+PL +T SGWEWSGAG WGLLGD+S+RA +V Sbjct: 83 NPVEDCLRAGAAGLGWCLLSWFTGVVLLVLEYAK-----------------RWGAHRLTAEPEYDESPQWLVFSPFWVGDGLALLVLVRVMAKVTNIRFVTPTRSRGARRGVARSRSTGSLNDLSGPGSSAGGGGGSRLACAPITLDYFPLLQRVIATSVGAFLVLVVFTTQQVLICLRWGREADAPGVPRPLVIAAPLLLVEAFFLLRVVLIRTCGWLSGLTWLLLFSLTILVALRSGANSGDDADGASGGLQSYPWRECLAPLWAVDLLYAGVAGYVAANTMAGRFVMAPTQGLCFTLLLAALVGSTVAEMLLTGDHRLYKPSDKVPRLEYLRLDLPLLLAVASLMAFCLAVFLSVEHSVSMLINTHGYDDPLPLCETPSGWEWSGAGKASWGLLGDVSVRAEKKV 473
BLAST of mRNA_C-tenellus_contig6916.1.1 vs. uniprot
Match: D7G0H7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0H7_ECTSI) HSP 1 Score: 315 bits (808), Expect = 2.920e-94 Identity = 184/404 (45.54%), Postives = 246/404 (60.89%), Query Frame = 3 Query: 273 NPVDDCMNLGAAGFGWCMLLWVFGCLSLLLNFARQSDYDEGNSTSTRSSGFRWGIFHVQDSDGPPWLAFAPFWLGDIVGFAFLVRLICKVAGVRLAGPTR-RGTRRYGTREDSGGASGDL-------------RL----VNVDYFPLLQRVVVTWISSLLLLITLTVEQVLVCLQWGGGSEAPG---SLAVATPLLIIEFCCLLRVVLIRYHGWFSGLTCLLLLLLTLLVALRSNPTAPF--------LEDVPWLECLAPLWALNLLFLAAAGYLLANICLRRYLLTRVQTVCFTLYCISLVASIFAQVLLIGDERLG-VSDL--EVQIFRLDLPLLLGLFALTVFCLASYLSVEHTISRLIISHGYEDPVPLSKTVSGWEWSGAGTTRWGLLGDISLRAGPRV 1388 NPV+DC+ GAAG GWC+L W G + L+L +A++ G G + + P WL F+PFW+GD + LVR++ KV +R P R RG RR R S G+ DL RL + +DYFPLLQRV+ T + + L+L+ T +QVL+CL+WG ++APG L VA PLL++E LLRVVLIR +GW SGLT LLL LT+LVALRS + L+ PWLECLAPLW ++LL+ AGY+ AN R+++ Q +CF L +L S A++LL GD RL +SD ++ RLD+PLLL + +L FCLA +LSVEH++S LI +HGY+DP+PL +T SGWEWSGAG WGLLGD+S+RA +V Sbjct: 84 NPVEDCLRAGAAGLGWCLLSWFTGVVLLVLEYAKRW-------------GAHRGTAEPEYDESPQWLVFSPFWVGDGLALLVLVRVMAKVTNIRFVTPARSRGARRGDARSRSTGSLNDLSGHGSNAGGGGGSRLACAPITLDYFPLLQRVIATSVGAFLVLVVFTTQQVLICLRWGREADAPGVPRPLVVAAPLLLVEAFFLLRVVLIRTYGWLSGLTWLLLFSLTILVALRSGANSGDDADGASGGLQSYPWLECLAPLWVVDLLYAGVAGYVAANTMAGRFVMAPTQGLCFALLLAALAGSTVAEMLLTGDHRLHKLSDKVPRLEYLRLDMPLLLAVASLMAFCLAVFLSVEHSVSMLINTHGYDDPLPLCETPSGWEWSGAGKASWGLLGDVSVRAEKKV 474
BLAST of mRNA_C-tenellus_contig6916.1.1 vs. uniprot
Match: A0A836C9Z9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9Z9_9STRA) HSP 1 Score: 134 bits (336), Expect = 1.410e-29 Identity = 117/417 (28.06%), Postives = 184/417 (44.12%), Query Frame = 3 Query: 258 DSDFLNPVDDCMNLGAAGFGWCMLLWVFGCLSLLLNFARQSDYDEGNSTSTRSSGFRWGIFHVQDSDGPPWLAFAPFWLGDIVGFAFLVRLICKVAGVRLAGPTRRGT--RRYGT-----------REDSG---GASGDLRLVNVDYFPLLQRVVVTWISSLLLLITLTVEQVLVCLQWGG----GSEAPGS-------LAVATPLLIIEFCCLLRVVLIRYHGWFSGLTCLLLLLLTLLVALRSNPTAP-FLEDVPWLECLAPLWALNLLFLAAAGYL-LANICLRRYLLTRVQTVCFTLYCISLVASIFAQVLLIGDERLGVSDLEVQIFRLDLPLLLGLFALTVFCLASYLSVEHTISRLIISHGYEDPVPLSKTVSGWEWSGAGTTRWGLLGDISLRAGPRVKTKPVSSRLLG 1421 D+ + V ++ AG W + LW G +++L AR G W+AF PFWLGDI+G AF V+L+ +R P +R RRYG +E +G G G ++ Y PL+QRV + ++ LL +QVL CL+ + APG+ L +PLL +E L+R+++IR G +T LLLL TL + +++ + L D PW L P W L L+L ++ + +R +L+ Q LY ++L+A+ +++ L + + PL A +FCL L++E ++RL+ + G+EDP+PLS+ W G G W LLG + L K ++ LG Sbjct: 47 DAAQVEAVATILHSATAGVSWTLGLWCLGLGTVMLRAARPE-------------------LAADPITGTFWVAFVPFWLGDIMGMAFQVKLLSDAYPLRFITPEQRVLLERRYGAVGGGALSNTLPQELAGLGIGPLGKSIPCDMAYMPLVQRVAFAALVTVPLLALAIAQQVLACLELSSVAALNAAAPGAVLHRGNMLVTLSPLLAVEAAALVRMLIIRTRGPLPLITAALLLLGTLSIGAKADGVSGVLLSDAPWWAVLIPFWVLIALYLGVVAHIGMGEAFAKRVILSHAQRTSLLLYALALLAAGGGLGMVVARPILQGLPIWELALHVSAPLGALWSAAAMFCLGVCLAMEGAMARLLRTKGFEDPIPLSEVAGHWVKGGPGNENWALLGVVVLNRDNAAKEAQAAAATLG 444
BLAST of mRNA_C-tenellus_contig6916.1.1 vs. uniprot
Match: W7U2Q5_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2Q5_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 7.700e-17 Identity = 97/324 (29.94%), Postives = 152/324 (46.91%), Query Frame = 3 Query: 468 WLAFAPFWLGDIVGFAFLVRLICKVAGVRLAGPTRRGTRRYGTREDSGGASGDL-RLVNVDYFPLLQRVVVTWISSLLLLITLTVEQVL--VCLQWGGGSEAPG--SLAVAT-PLLIIEFCCLLRVVLIRYHGWFSGLTCLLLLLLTLLVALR-SNPTAPFLEDVPWLEC---------LAPLWALNLLFLAAAGYL-LANICLRRYLLTRVQTVCFTLYCISLVASIFAQVLLI---GDERLGVSD-LEVQIFRLDLPLLLGLFALTVFCLASYLSVEHTISRLIISHGYEDPVPLSKTVSGWEWSGAGTTRWGLLGDISLRA 1376 WL F PFW D+V + ++ + +R +G ++ +R + + + + ++ + PL Q V+ +++ L+ +T +L + LQ GGG+ SL +A P+++ E L+ + +R + L LL+L TL+V LR S+P P L +P + P WAL +L LA Y+ + C RRY L+ C LY SL A V+ G G++ L +Q F L + L A+ L YL + L SHGYEDP+PLS+T GWE +GA + W LLG + A Sbjct: 130 WLIFTPFWAADLVAWMVVLWALHWTCSLRTSGV------QHESRIMAPSSHREAQKTLSTEMLPLFQIVMRALLNATPFLLCITAAHILLFIFLQSGGGNFGRPWVSLWLAILPIVLWEMLALISAICLRTGSFSKALGWLLILFATLMVGLRFSSPPFP-LSSIPCIRAAHNAPLWVTFTPFWALEILLLATLVYVSIQACCARRYRLSSQHVSCIILYTSSLGFLALASVMFAWRHGTWESGLNHALRLQNFSDTLSGIATLCAVGFAELGFYLVAADEVEHLTTSHGYEDPMPLSRTARGWEPTGARVSNWLLLGRLEETA 446
BLAST of mRNA_C-tenellus_contig6916.1.1 vs. uniprot
Match: A0A7S3YCK5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YCK5_HETAK) HSP 1 Score: 87.4 bits (215), Expect = 5.620e-15 Identity = 83/288 (28.82%), Postives = 120/288 (41.67%), Query Frame = 3 Query: 273 NPVDDCMNLGAAGFGWCMLLWVFGCLSLLLNFARQSDYDEGNSTSTRSSGFRWGIFHVQDSDGPPWLAFAPFWLGDIVGFAFLVRLICKVAGVRLAGPTRRGTRRYGTREDSGGASGDLRLVNVDYFPLLQRVVVTWISSLLLLITLTVEQVLVCLQWGG--GSEAPGSLAVATPLLIIEFCCLLRVVLIRYHGWFSGLTCLLLLLLTLLVALRSNPTAPFLEDVPWLECLAPLWALNLLFLAAAGYLLANICLRRYLLTRVQTVCFTLYCISLVASIFAQVLLIGDE 1130 NPV+ C+ + G G +LLW G L + L N+ S F F PFWLGDI+ A R++ R R RRY + + R V+++Y PL+QRVV+ S+ L+ L QVL+CL+ G G+ +P + AVA PL + E L L+R H S LLL T +A +++ P+ AP WAL L A + R+ L R Q + LY +L + A+ + E Sbjct: 63 NPVELCLKIAVKGLGLTLLLWCIGLLFVALAVC--------NAAGRASWAF----------------IFTPFWLGDIMALAVQARVLAAACSFRFLPNERLALRRYLQDQST-------RAVDMNYLPLVQRVVLAVAVSVPALLLLVAFQVLLCLRLEGAAGAMSPSAAAVALPLFLAEGVGLAHFCLLRDHSLASASCWLLLFASTASLAHKADAGGA--AAFPFAAAFAPAWALTALLAGLAAGAWVDHARARHFLARRQRLALNLYAAALALAALAEAVTAAHE 317 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6916.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig6916.1.1 >prot_C-tenellus_contig6916.1.1 ID=prot_C-tenellus_contig6916.1.1|Name=mRNA_C-tenellus_contig6916.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=465bp MSIKPGYSSVRRPPASGGGVVVSGTASDAMTRGRASESSRLVYHRPNVISback to top mRNA from alignment at C-tenellus_contig6916:2670..6962+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig6916.1.1 ID=mRNA_C-tenellus_contig6916.1.1|Name=mRNA_C-tenellus_contig6916.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4293bp|location=Sequence derived from alignment at C-tenellus_contig6916:2670..6962+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig6916:2670..6962+ >mRNA_C-tenellus_contig6916.1.1 ID=mRNA_C-tenellus_contig6916.1.1|Name=mRNA_C-tenellus_contig6916.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1395bp|location=Sequence derived from alignment at C-tenellus_contig6916:2670..6962+ (Choristocarpus tenellus KU2346)back to top |