mRNA_C-tenellus_contig6908.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6908.1.1
Unique NamemRNA_C-tenellus_contig6908.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig6908.1.1 vs. uniprot
Match: D7FYK6_ECTSI (Aminodeoxychorismate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYK6_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 3.260e-39
Identity = 83/128 (64.84%), Postives = 97/128 (75.78%), Query Frame = 2
Query:  380 LNRADLSE-IKRVTDAT---PGLQSVGRERVVTRGFPIELSLGAPRHRPGTDGFVTSGGVEVTCEVMDVDDAARSVEELVEALDTRKGVLLSSSYEFPGRYARWTLGFVDPPLELSGSGRNFRVRALN 751
            LN AD+SE + +V  A    P + +        RGFP  LSLGAPRHRPGTDG+ T G VEV+C+VMDV  A   VE+LV ALD+R+GVLL+SSYEFPGRYARWTLGF DPPLELSG+GR+FRVRALN
Sbjct:    6 LNGADVSEDLTQVNGAAAMPPPVAANTARTAQQRGFPATLSLGAPRHRPGTDGYTTKGNVEVSCKVMDVPHAEECVEDLVHALDSRRGVLLTSSYEFPGRYARWTLGFSDPPLELSGTGRDFRVRALN 133          
BLAST of mRNA_C-tenellus_contig6908.1.1 vs. uniprot
Match: A0A835Z6A5_9STRA (Aminodeoxychorismate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6A5_9STRA)

HSP 1 Score: 142 bits (357), Expect = 4.250e-33
Identity = 66/98 (67.35%), Postives = 79/98 (80.61%), Query Frame = 2
Query:  464 TRGFPIELSLGAPRHRPGTDGFVTSGGVEVTCEVMDVDDAARSVEELVEALDTRKGVLLSSSYEFPGRYARWTLGFVDPPLELSGSGRNFRVRALNAR 757
            ++GFP  LSLGAPRHRP  D + T GGVEVTCEV +V DA   VE L+ ALD ++GVLL+SSYEFPGRYARWTLGFV+PP+E++G+G  F VRALN R
Sbjct:   14 SKGFPAGLSLGAPRHRPAQDSYTTGGGVEVTCEVGEVFDATERVEALISALDDQRGVLLTSSYEFPGRYARWTLGFVNPPIEVAGTGDRFTVRALNER 111          
BLAST of mRNA_C-tenellus_contig6908.1.1 vs. uniprot
Match: W7TEM3_9STRA (Aminodeoxychorismate synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEM3_9STRA)

HSP 1 Score: 129 bits (325), Expect = 7.900e-29
Identity = 58/91 (63.74%), Postives = 75/91 (82.42%), Query Frame = 2
Query:  485 LSLGAPRHRPGTDGFVTSGGVEVTCEVMDVDDAARSVEELVEALDTRKGVLLSSSYEFPGRYARWTLGFVDPPLELSGSGRNFRVRALNAR 757
            LSLGAPR+RP +  F+T GGV+VTC+V DV D  + V+ L+E LD+ +GVLL+SSYEFPGRYARWT+GF+DPPL++   G NF+V+ALNAR
Sbjct:  116 LSLGAPRYRPLSGRFITKGGVQVTCQVEDVSDTGKEVDALLEGLDSHEGVLLASSYEFPGRYARWTIGFIDPPLKIESRGLNFKVKALNAR 206          
BLAST of mRNA_C-tenellus_contig6908.1.1 vs. uniprot
Match: A0A7S2HFX2_9STRA (Aminodeoxychorismate synthase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HFX2_9STRA)

HSP 1 Score: 115 bits (289), Expect = 3.440e-24
Identity = 58/120 (48.33%), Postives = 83/120 (69.17%), Query Frame = 2
Query:  398 SEIKRVTDATPGLQSVGRERVVTRGFPIELSLGAPRHRPGTDGFVTSGGVEVTCEVMDVDDAARSVEELVEALDTRKGVLLSSSYEFPGRYARWTLGFVDPPLELSGSGRNFRVRALNAR 757
            S   RVTDA P   S     V +      L+LGAPR RP +  ++T G V V+  V D+++   ++E+L++ LD ++G L +SSYEFPGRYARWTLGF++PP+E+SG+GR+F+V+ALN R
Sbjct:   47 SATDRVTDAEPLPLSTTYPEVESG----RLTLGAPRDRPRSRKYMTKGSVGVSVAVNDLENPRETIEKLIDTLDMKRGALFTSSYEFPGRYARWTLGFINPPIEISGTGRDFKVKALNER 162          
BLAST of mRNA_C-tenellus_contig6908.1.1 vs. uniprot
Match: A0A7S3ZU32_9STRA (Aminodeoxychorismate synthase n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZU32_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.230e-22
Identity = 57/96 (59.38%), Postives = 71/96 (73.96%), Query Frame = 2
Query:  476 PIE--LSLGAPRHRPGTDGFVTSGGVEVTCEVMDVDDAARSVEELVEALDTRKGVLLSSSYEFPGRYARWTLGFVDPPLELSGSGRNFRVRALNAR 757
            P+E  LSLGAPR +P    +VT+GGV VT +   V+DA  + E LV+ALD R+GVL+ SSYEFPGRYARWT+GF DPP+ LSG  R+F + ALN R
Sbjct:  119 PLESVLSLGAPRFQPPNGTYVTAGGVGVTRQSFTVEDAHGATEALVDALDDRRGVLMHSSYEFPGRYARWTVGFSDPPVLLSGRARDFALSALNDR 214          
BLAST of mRNA_C-tenellus_contig6908.1.1 vs. uniprot
Match: A0A7S4MER5_9STRA (Aminodeoxychorismate synthase n=3 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MER5_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.740e-22
Identity = 67/141 (47.52%), Postives = 83/141 (58.87%), Query Frame = 2
Query:  398 SEIKRVTDATPGLQSVGRERVVTRG--------FPIELSLGAP-RHRPGTDGFVTSGGVEVTCEVMDVD------------DAARSVEELVEALDTRKGVLLSSSYEFPGRYARWTLGFVDPPLELSGSGRNFRVRALNAR 757
            SE    +  TP   +V   +   RG        F   LSLGAP   RPG   F+T GGV+VT  V +V             ++A  +E+LV+ LDTR+GVLLSSSYEFPGRYARW++GF DPPLE+SG G+   VRALN R
Sbjct:   47 SETAPSSSVTPNYNAVHVAKTGGRGSRTAGQAAFESGLSLGAPIALRPGGGHFLTRGGVQVTAHVEEVQHSNKPIVGGEQTNSASMIEDLVDKLDTRRGVLLSSSYEFPGRYARWSVGFTDPPLEISGRGQKCTVRALNKR 187          
BLAST of mRNA_C-tenellus_contig6908.1.1 vs. uniprot
Match: A0A7R9WEH9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WEH9_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.920e-22
Identity = 60/113 (53.10%), Postives = 73/113 (64.60%), Query Frame = 2
Query:  485 LSLGAPRHRPGTDGFVTSGGVEVTCEVMDV--------------DD--------AARSVEELVEALDTRKGVLLSSSYEFPGRYARWTLGFVDPPLELSGSGRNFRVRALNAR 757
            LSLGAPR +P    F+T GGV+VT  V  V              DD        +A  VE+LV+ LDTR+GVLL+SSYEFPGRYARW+LGFVDPPLE++G G+   +RALN R
Sbjct:  109 LSLGAPRSQPSGGHFLTKGGVQVTAHVETVPFGTKAAASSEEAKDDKVGKSIRNSASRVEDLVDMLDTRRGVLLTSSYEFPGRYARWSLGFVDPPLEIAGRGQKCTIRALNER 221          
BLAST of mRNA_C-tenellus_contig6908.1.1 vs. uniprot
Match: A0A7S2XWD8_9STRA (Aminodeoxychorismate synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWD8_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.170e-22
Identity = 56/93 (60.22%), Postives = 69/93 (74.19%), Query Frame = 2
Query:  485 LSLGAPRHRPGTDGFVTSGGVEV-TC-EVMDVDDAARSVEELVEALDTRKGVLLSSSYEFPGRYARWTLGFVDPPLELSGSGRNFRVRALNAR 757
            L+LGAPR++P T  +VT GGVEV  C E +D  +A   V +L + LD  KGVLLSSSY FPGRYARW+LGF  PPLE+ GSGR+FR++ LN R
Sbjct:   73 LTLGAPRYQPDTGSYVTDGGVEVDVCSEELDYLEAQTMVRQLAQTLDDHKGVLLSSSYIFPGRYARWSLGFAKPPLEVVGSGRDFRIKVLNQR 165          
BLAST of mRNA_C-tenellus_contig6908.1.1 vs. uniprot
Match: A0A7S2R582_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R582_9STRA)

HSP 1 Score: 108 bits (269), Expect = 6.100e-22
Identity = 66/162 (40.74%), Postives = 95/162 (58.64%), Query Frame = 2
Query:  338 TARARRAVNSSP--LQLNRADLSEIKRVTDATPGLQSVGRERVVTRG--------FPIELSLGAPRHRPGTDGFVTSGGVEVTCEVMDVD------------DAARSVEELVEALDTRKGVLLSSSYEFPGRYARWTLGFVDPPLELSGSGRNFRVRALNAR 757
            TA ++ A +S+P  +Q ++  LS +   T + P   SV   +   RG           +LSLGAP+ RP    F+T GGV++T  V  ++             +A ++E+LV+ LD RKGVL +SSYE+PGRY RW+LGFVDPPLE+SG G+   + ALN+R
Sbjct:   23 TALSKHAYSSTPFLVQSSKTALSMVS--TSSPPDYNSVHVAKTGGRGAISSSQDALNKDLSLGAPKDRPIGGHFLTRGGVQITANVKALNFVRQGTKDAAEGSSAHAIEQLVDKLDNRKGVLFASSYEYPGRYGRWSLGFVDPPLEVSGKGQQCTITALNSR 182          
BLAST of mRNA_C-tenellus_contig6908.1.1 vs. uniprot
Match: A0A7S1YQY3_9STRA (Aminodeoxychorismate synthase n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YQY3_9STRA)

HSP 1 Score: 108 bits (271), Expect = 7.510e-22
Identity = 55/103 (53.40%), Postives = 73/103 (70.87%), Query Frame = 2
Query:  485 LSLGAPRHRPGTDGFVTSGGVEVTCEVMDV------------DDAARSVEELVEALDTRKGVLLSSSYEFPGRYARWTLGFVDPPLELSGSGRNFRVRALNAR 757
            LSLGAP+ RP    ++T GGV+VT +V  +              +  +VE+LVE LD+++GVLL+SSYEFPGRYARW+LGFVDPPLE+SG+G+   +RALN R
Sbjct:   65 LSLGAPQKRPSGGHYLTRGGVQVTADVKSLRFSSNKDSINVPGTSLHAVEQLVEKLDSQRGVLLTSSYEFPGRYARWSLGFVDPPLEISGTGQKCTIRALNDR 167          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6908.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYK6_ECTSI3.260e-3964.84Aminodeoxychorismate synthase n=1 Tax=Ectocarpus s... [more]
A0A835Z6A5_9STRA4.250e-3367.35Aminodeoxychorismate synthase n=1 Tax=Tribonema mi... [more]
W7TEM3_9STRA7.900e-2963.74Aminodeoxychorismate synthase n=2 Tax=Monodopsidac... [more]
A0A7S2HFX2_9STRA3.440e-2448.33Aminodeoxychorismate synthase n=1 Tax=Dictyocha sp... [more]
A0A7S3ZU32_9STRA1.230e-2259.38Aminodeoxychorismate synthase n=2 Tax=Pelagomonas ... [more]
A0A7S4MER5_9STRA1.740e-2247.52Aminodeoxychorismate synthase n=3 Tax=Odontella au... [more]
A0A7R9WEH9_9STRA1.920e-2253.10Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2XWD8_9STRA2.170e-2260.22Aminodeoxychorismate synthase n=1 Tax=Fibrocapsa j... [more]
A0A7S2R582_9STRA6.100e-2240.74Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S1YQY3_9STRA7.510e-2253.40Aminodeoxychorismate synthase n=3 Tax=Ditylum brig... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6908contigC-tenellus_contig6908:2..2314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FYK6
PFAMsAnth_synt_I_N,Chorismate_bind,GATase
Model size1241
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorychloroplast
Exons3
Evalue3.87e-43
EggNOG OGsCOG0147@1|root,COG0512@1|root,KOG0026@2759|Eukaryota,KOG1223@2759|Eukaryota
Descriptionanthranilate synthase activity
Cds size591
COG categoryEH
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790000.663902-UTR-C-tenellus_contig6908:1..4821680790000.663902-UTR-C-tenellus_contig6908:1..482Choristocarpus tenellus KU2346UTRC-tenellus_contig6908 2..482 -
1680790000.7173064-UTR-C-tenellus_contig6908:2145..23141680790000.7173064-UTR-C-tenellus_contig6908:2145..2314Choristocarpus tenellus KU2346UTRC-tenellus_contig6908 2146..2314 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790000.6795018-CDS-C-tenellus_contig6908:482..6801680790000.6795018-CDS-C-tenellus_contig6908:482..680Choristocarpus tenellus KU2346CDSC-tenellus_contig6908 483..680 -
1680790000.6888547-CDS-C-tenellus_contig6908:1414..15221680790000.6888547-CDS-C-tenellus_contig6908:1414..1522Choristocarpus tenellus KU2346CDSC-tenellus_contig6908 1415..1522 -
1680790000.7018569-CDS-C-tenellus_contig6908:1860..21451680790000.7018569-CDS-C-tenellus_contig6908:1860..2145Choristocarpus tenellus KU2346CDSC-tenellus_contig6908 1861..2145 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6908.1.1prot_C-tenellus_contig6908.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6908 483..2145 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6908.1.1

>prot_C-tenellus_contig6908.1.1 ID=prot_C-tenellus_contig6908.1.1|Name=mRNA_C-tenellus_contig6908.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=197bp
MVRSLAVALVVVTYFWTPPAYAFVPVRISLPGSRQLLPGDSLEALSKVAR
NQCYQRTARARRAVNSSPLQLNRADLSEIKRVTDATPGLQSVGRERVVTR
GFPIELSLGAPRHRPGTDGFVTSGGVEVTCEVMDVDDAARSVEELVEALD
TRKGVLLSSSYEFPGRYARWTLGFVDPPLELSGSGRNFRVRALNAR*
back to top

mRNA from alignment at C-tenellus_contig6908:2..2314-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6908.1.1 ID=mRNA_C-tenellus_contig6908.1.1|Name=mRNA_C-tenellus_contig6908.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2313bp|location=Sequence derived from alignment at C-tenellus_contig6908:2..2314- (Choristocarpus tenellus KU2346)
CTCCAGGACAGGTTTCTTTGTCGTTGGTAAGTCCTTTTAATTGAATTATT GCCGAGACTGCTAGAGACCTATACCCACTCCGACACACTTTAATCTCAGA GAAGAAGTCAGTTGTGGTACTCTACAAGGCCCTACACTCTACCTGAGGTT GATCTACGTATACCACCTTATGGTTCGTTCATTGGCCGTCGCGTTGGTCG TGGTGACCTACTTTTGGACACCACCAGCATATGCTTTTGTCCCTGTACGA ATCTCCCTGCCTGGATCAAGGCAACTTCTGCCGGGTGATAGTCTTGAAGC TCTTTCTAAGGTAGCTAGGAACCAATGCTACCAGAGGACTGCCAGGGCCC GCCGTGCAGTGAACTCATCCCCTTTGCAACTCAATCGAGCAGACTTATCT GAGATTAAAAGAGTGACGGATGCGACGCCTGGACTGCAGTCTGTCGGTAG GGAGGTAAGGGCACTGGTATGTTTTTGATACTGCTACCAACCTTTTTGCT CAGGATTAGGTCCTCTTCCAGCCATTATTCAGCCTTACAAGGTAGATGTG ACAAGTTAACATAAGAGGTTGAGGATGAGTTGACATGTAGTCACCTCGGC TGTATGTGTGTACCTCTCCTCAAGCCCACACCCAGCTGTAGCCCTCGCTT TCTTTACAAGTGCCAGATGTTGCCACAGAATAGTCCAGGTGAATTATCAC TCTCACCTTCGTCACTCGAACGACCAAAACATTGCGAATGATGGCTTTGT ATGGGTGAACTGCTTCCCCACCTTCCAATTCACACTTGGCAGCGTGTTGT GACGAGGGGATTCCCGATAGAGTTGTCACTCGGGGCACCTCGACATCGGC CAGGAACTGATGGTTTCGTCACTAGCGGTGGTGTTGAGGTCACCTGTGAG GTGAGTTGCTGAGTTGGGGCTGACTGAGGCAGCAATCAGGGATGTCCAGC TGGTCCCAACTTCCTGTTGGAGCTCTACGACAACACCACAATAACATGCA TACAATTTCTACACGTTTCTTTCAACGAAACGGTTCAATACAGTCAGAAT TGTATATATTCAGTATATATTTATCCCAACCCTAGCAAGCATATTGCAGC ATCTTCTTGAAAGTAAAGGATACACAACGGAATTTCTCTTTATCTTCCCT TCACCTTTACCTTCTGTCCTCACTCCATACATCCATCTCTTAACCTTCAA CCTCTCTCCCTCCCCCAACTGTCCCCATTCATCCGCTGACTTTGCCTTAA ATAACTCTCTCTCTCTCCTTGTCCTCATTCCACACCCTGTCCCCTCCTAC CCTACCCTTCACCCCCCCCATAGCTTGCCTTACCCTTGTGCCCATCGAGT GAAAGTATCTTAGGGTTAGGTTACAACTTTTTCCCTGTTTGTCCATTTGG GGCTTGGCTTCCCTCAGGATTTTTTTTTATTGAATTTTCCTACTCCAAAA TACTTCTTAGTAGGTAAAACGTACGCATCATGAAAAGGATTTTGACACTT CCTAACAAACACAATAACCAAAATTACATCAAAATCGCAACATTGGGTTT TGGCCCCCAAATGGACGCGGCTCTACTCTACCCTCTTAGATAATTTGGCT CCATCACGTATACTCTCCCTGTACTTCTCTGCAGGTGATGGATGTGGACG ATGCGGCGAGGAGTGTTGAGGAGCTAGTAGAGGCCTTGGACACAAGAAAG GGAGTCCTCCTGTCCTCATCGTATGAATTTCCCGGCCGGTATGCTCGCTG GACTCTGGGGTTTGTAGACCCGCCTCTGGAACTGTCGGGTTCAGGGAGAA ATTTCCGTGTCCGGGCGCTAAATGCCAGGTGAGATAGATGCGGATTGAGG CGAACGAGGTGAACAGCCAATGTGCTGTATGGGGTGCAATGTACCCTGTA TTGAGTGATTGGTTGATGTCTTCCTTTAGGTGTTCAGTTGGGAGATGCGT GAAGTATGTATGTATGTATGTATATATATAGGTGTTTTAAAGAGTGTAGA TGGAGTGGTTTTACCTCCTGTCGTATATGGGGGGCATACTTTAGTACCTT AAGTGCTCTGTGTGAGAGAGGACCTCGGCTATACCCTTTGCCGGGACGAG ACCTTGCCTTTTTTTTGTGTGAGGGAAGTGTCGTGGGTCCGGTTGAGGTG TACCTCATTCGTGTACGTTATACCTCATTCGTGTACGTTGTACCTCATTC GTGTAACGTTGTACCTCATTCGTGTACGTTGTACCTCATTCGTGTACGGT GTACCTCATTCGTGTACGGTGTACCTCATTCGTGTACGGTGTACCTCATT CGTGTACGGTGTA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig6908:2..2314-

>mRNA_C-tenellus_contig6908.1.1 ID=mRNA_C-tenellus_contig6908.1.1|Name=mRNA_C-tenellus_contig6908.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=591bp|location=Sequence derived from alignment at C-tenellus_contig6908:2..2314- (Choristocarpus tenellus KU2346)
ATGGTTCGTTCATTGGCCGTCGCGTTGGTCGTGGTGACCTACTTTTGGAC
ACCACCAGCATATGCTTTTGTCCCTGTACGAATCTCCCTGCCTGGATCAA
GGCAACTTCTGCCGGGTGATAGTCTTGAAGCTCTTTCTAAGGTAGCTAGG
AACCAATGCTACCAGAGGACTGCCAGGGCCCGCCGTGCAGTGAACTCATC
CCCTTTGCAACTCAATCGAGCAGACTTATCTGAGATTAAAAGAGTGACGG
ATGCGACGCCTGGACTGCAGTCTGTCGGTAGGGAGCGTGTTGTGACGAGG
GGATTCCCGATAGAGTTGTCACTCGGGGCACCTCGACATCGGCCAGGAAC
TGATGGTTTCGTCACTAGCGGTGGTGTTGAGGTCACCTGTGAGGTGATGG
ATGTGGACGATGCGGCGAGGAGTGTTGAGGAGCTAGTAGAGGCCTTGGAC
ACAAGAAAGGGAGTCCTCCTGTCCTCATCGTATGAATTTCCCGGCCGGTA
TGCTCGCTGGACTCTGGGGTTTGTAGACCCGCCTCTGGAACTGTCGGGTT
CAGGGAGAAATTTCCGTGTCCGGGCGCTAAATGCCAGGTGA
back to top