mRNA_C-tenellus_contig6884.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6884.1.1
Unique NamemRNA_C-tenellus_contig6884.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6884.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6884contigC-tenellus_contig6884:305..2871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1893
Hectar predicted targeting categorysignal peptide
Exons3
Cds size411
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789998.772212-UTR-C-tenellus_contig6884:304..13481680789998.772212-UTR-C-tenellus_contig6884:304..1348Choristocarpus tenellus KU2346UTRC-tenellus_contig6884 305..1348 -
1680789998.7840402-UTR-C-tenellus_contig6884:1451..17331680789998.7840402-UTR-C-tenellus_contig6884:1451..1733Choristocarpus tenellus KU2346UTRC-tenellus_contig6884 1452..1733 -
1680789998.817319-UTR-C-tenellus_contig6884:2715..28711680789998.817319-UTR-C-tenellus_contig6884:2715..2871Choristocarpus tenellus KU2346UTRC-tenellus_contig6884 2716..2871 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789998.7936497-CDS-C-tenellus_contig6884:1733..19571680789998.7936497-CDS-C-tenellus_contig6884:1733..1957Choristocarpus tenellus KU2346CDSC-tenellus_contig6884 1734..1957 -
1680789998.8038223-CDS-C-tenellus_contig6884:2528..27151680789998.8038223-CDS-C-tenellus_contig6884:2528..2715Choristocarpus tenellus KU2346CDSC-tenellus_contig6884 2529..2715 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6884.1.1prot_C-tenellus_contig6884.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6884 1734..2715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6884.1.1

>prot_C-tenellus_contig6884.1.1 ID=prot_C-tenellus_contig6884.1.1|Name=mRNA_C-tenellus_contig6884.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=137bp
MTRLTFLSGLTSLLTLLKATDAFLPNTFLFGQRGFAAARAVSESGSTCTS
QVSMKAGEGMTRGEFSRQTVATILAGITAGANVGPSLAAGKRGLSSPSAA
VRGPSLSFPFVSPIKEQNQCCAVVTGKATRGNTILD*
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mRNA from alignment at C-tenellus_contig6884:305..2871-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6884.1.1 ID=mRNA_C-tenellus_contig6884.1.1|Name=mRNA_C-tenellus_contig6884.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2567bp|location=Sequence derived from alignment at C-tenellus_contig6884:305..2871- (Choristocarpus tenellus KU2346)
AAAAGCCACTCCAACATGTGAATCCACTCTCAAATCTCAACTTGTTCACA
ACAGTAGTATTAGATATTTAGCGTTGCACCTCGGTCTTTGAATCTGAGGC
CAAAGACCTTATTCTAACGAGGAGGTTGCTACCGTGTTGTGGAGGGAGAG
TTCAGCATGACGCGCTTAACATTCTTGTCAGGATTGACATCGTTATTGAC
TTTACTGAAGGCAACAGATGCTTTCTTGCCCAACACTTTCTTGTTCGGAC
AGCGTGGATTTGCGGCCGCTCGTGCTGTGTCAGAAAGTGGATCAACCTGC
ACCTCGCAAGTCTCCATGAAAGCTGGGGAGGGTATGACACGAGGTACGTA
GGATCTCACTCCCCTCAATTTGAGGCTTAGGTGGTTGAACTGTAACACTT
GTCATGTGCTTCCTATAACTGTCGTCTTGGAGGACGAACAACTTCTTCCT
TGCGGGTTGATAGAATACTTATGCTTTGGTGGTAGAGTTGTACACAGGGT
ATGCCGTTTTGCAGCTCGAGTAATCCTTCTCTTGAGGAGGCTGTAATAGC
ATATCCCAGTTGCCAATGCAACTTATTCCCTGAAGTCTGGATTGGTGTCC
TCAAAGATCATGCGAGAGAAGATTCTTTGTTTGTCCTGGGGTTGCAGGGG
ACCCTGACAATTCTCATATGCCTTATTGAAGCTCTTCTGTGAGCAGTCCG
AAATCTGCGTTTGCCCTTTAGCAATCGAGGATTTGTTCCCCTTTCCTACG
ACTCACTGCCAACTCGGTAGTCTGTGGATAGTAAGATGATTCGTATCTTT
TGCTCGGGGTGCATTGCTGCTCACGCGATCAATTTTCGATGTCTAATCAA
GGGTTGATTTTCATCATCCCACCCTTGACATGTCTGCTTGCACAAAACCG
GCCACACTCAAAAGGGGAATTCAGTCGCCAGACAGTGGCGACAATACTTG
CAGGAATTACAGCTGGGGCAAATGTCGGCCCTTCGTTAGCAGCAGGAAAG
CGAGGTTTGAGCTCCCCATCAGCTGCGGTGAGAGGCCCATCTTTGTCTTT
TCCGTTTGTAAGCCCAATCAAGGAACAAAATCAATGCTGTGCGGTGGTAA
CGGGAAAAGCAACGAGGGGGAATACAATATTGGACTAGAAGTGTTTTCTT
GCACCGGGGTACTTCCAGGTTGATGCCGCAATGCAAGATTACCAAGAATT
TATGGATGGAATCATGTTGCAGTTTCTGACAGCAAATGTAAGCAATGAGC
GGAAGACAAGCCTTCTACCACCTTTGGCGTCGTTTTCTTTACTAAGAAGG
ATACGGACAAGTGGAGAGAGATTCACAATTTGTTTGAAGAAGGGATTAGA
TAAGTCTACACAAACAGCGCATCCCCCACTATTTGCAACCATGACCTCAG
CGGAGCCTATCTGAAGCCCAACGCAAGAGGTTGCATCTGCATGCAACTCC
TGTGTCAAACAACCGTGGAGCCAGTACTGTGATGGACCGAGGTTGAAGTT
TTCATGATCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGCATATTCTATATGGTGTACTTGGAACAGAAAATTTTGTGGCCCTTTCA
ATAATGTAGTGTACATCAGGTAATGCAACAAAATATGCTTGGTTTCTAGT
GAGACGACATGTTTTATCCAGGTGGAAAGGAGAAGCATTTTCCGGGGAGA
GTATTCCACAAACTTTCCTTCTGATGACGGAGTCACTAAAAATGATTGCC
AGGACGGGTTGAGAGTTAAACCTTTATAGTGTGTGCTTATGTAACATTTA
CTGAGCCATTTGAGTTGTCATACCTTTAGTTCGGCATTGTATTGCAATGC
TTCTCTCAGATGAGGTTGCGACCCAGCCCTTATTGTGGGATGCTACCGCC
TTCATCTGGGATGAAGGGTGTTTCGGTGACAAAGACTGGTGCGGTTTCAC
CTGGACACGGACATAGGCCAAACACTCTAGTCGTGTGAGTTTTTGCTTTT
GTTCCAGAGTTACTTGCATGCTTCCGTGAGGATGCAACTCTGTCCCTATA
TTTGATGTTCAATGTATTAGCCAATAGGGTTTCGGTATTGATGTGGTGCG
TGTTGTAGGTTTGGTTGAGGATGAGGTTGAGGATATAGTATGGAGCGTGA
CAAACAAGCACTGGTAGTATCGGTCACTGTTGACCCTTGCGTGTGTGTCA
CTGCAGGAAGGAGTGACCAAAACGTGAGATACAATGCGTGCTTTTACTTT
GATGGTGAAACGGCTTTCAGGGGCGTGCTTTTCTTTTTCTCTTTTCTAGG
GTGTACCCTACCTATCCAGCACGAGCTTGTATCGATCAGTCGACAGCACT
GTCTTGCATCAAGTCACCGACTCATTAGGTGGGAACAAGAGACAGCACAA
CTAACTTACAGCTGGCTCTATTTTATTTTATTTTATTTTGTTTTGTTTTG
TTTTGTTTTGTTTTGTCTTGACTGTGAGAAGCAAGGATGTGCGTTCTTTC
TTAATTTTTCTGGATTCACCGAAGAATGTCGTTGATCAAAAAATAAAAAA
TAAAAAATAAAGCAGAG
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Coding sequence (CDS) from alignment at C-tenellus_contig6884:305..2871-

>mRNA_C-tenellus_contig6884.1.1 ID=mRNA_C-tenellus_contig6884.1.1|Name=mRNA_C-tenellus_contig6884.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=411bp|location=Sequence derived from alignment at C-tenellus_contig6884:305..2871- (Choristocarpus tenellus KU2346)
ATGACGCGCTTAACATTCTTGTCAGGATTGACATCGTTATTGACTTTACT
GAAGGCAACAGATGCTTTCTTGCCCAACACTTTCTTGTTCGGACAGCGTG
GATTTGCGGCCGCTCGTGCTGTGTCAGAAAGTGGATCAACCTGCACCTCG
CAAGTCTCCATGAAAGCTGGGGAGGGTATGACACGAGGGGAATTCAGTCG
CCAGACAGTGGCGACAATACTTGCAGGAATTACAGCTGGGGCAAATGTCG
GCCCTTCGTTAGCAGCAGGAAAGCGAGGTTTGAGCTCCCCATCAGCTGCG
GTGAGAGGCCCATCTTTGTCTTTTCCGTTTGTAAGCCCAATCAAGGAACA
AAATCAATGCTGTGCGGTGGTAACGGGAAAAGCAACGAGGGGGAATACAA
TATTGGACTAG
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