mRNA_C-tenellus_contig6859.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6859.1.1
Unique NamemRNA_C-tenellus_contig6859.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig6859.1.1 vs. uniprot
Match: A0A6H5KVW5_9PHAE (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVW5_9PHAE)

HSP 1 Score: 234 bits (596), Expect = 1.490e-66
Identity = 118/207 (57.00%), Postives = 147/207 (71.01%), Query Frame = 1
Query:    1 TIRVIKGIRLCQSHFDRIVESSGWLTSQIIDIRMKQLQEQHPYHIYLDTSFFGFLCPAHDEEGHFVVDYQRVKGWTKPSRLPTGRKTLFELEKVFIPINEGNIHWVLVVVDL--------------VGKREGGEHHPS---VSFFDSQGRNGIDYVEAIQEYLLSELSNRGEEEELEALTLVSQPPLNAPKQFNNSDCGVLMLHVIE 570
            T+R I+GI L Q HFDRIV+S GWLTSQ+IDIR+KQLQE++P H+Y D+SFFGFLCP  ++ G FVVDY RV GWTK SRLP G+ +LF++ K+FIPIN+GN+HWVLVVVD+                   G         VSFFDS GR G  YVEA+Q+YL+SELS+R +  + E  T   +PP NAP+Q N+SDCGVLMLHV+E
Sbjct:  371 TLRTIRGINLQQDHFDRIVDSDGWLTSQVIDIRVKQLQERYPQHLYFDSSFFGFLCPTTEKGGAFVVDYARVAGWTKQSRLPGGKSSLFDMRKLFIPINQGNVHWVLVVVDMDSDDXXXXXXXXXXXXSDRGNVXXXGAKVVSFFDSFGREGTPYVEAVQQYLVSELSSRDKTRQ-ELFTPRPRPPDNAPRQHNSSDCGVLMLHVME 576          
BLAST of mRNA_C-tenellus_contig6859.1.1 vs. uniprot
Match: A0A8J2T146_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T146_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.930e-13
Identity = 57/168 (33.93%), Postives = 83/168 (49.40%), Query Frame = 1
Query:   64 SGWLTSQIIDIRMKQLQEQHPYHIYLDTS------FFGFLCPAHDEEGHFVVDYQRVKGWTKPSRLPTGRKTLFELEKVFIPINEGNIHWVLVVVDLVGKREGGEHHPSVSFFDSQGRNGIDYVEAIQEYLLSELSNRGEEEELEALTLVSQPPLNAPKQFNNSDCGV 549
            SGWL  ++++  M  LQE+       D S      F  F      E G +  +Y++VK WTK       R  LF   KVF P+N GN+HW +V+VD+  K         V +FDS G  G  Y++A++ YL  E   + +  ELE    +++   + P+Q N  DCGV
Sbjct:  276 SGWLVDEVVNYYMFLLQERDALVCASDGSRKPCHFFNSFFFTKLLENGSY--NYRQVKRWTK-------RFDLFSRSKVFAPVNVGNMHWCMVMVDVARKE--------VRYFDSMGAGGEPYLKAMKRYLEDEHRTK-KGSELEGGWTLTRTTRDTPRQTNGYDCGV 425          
BLAST of mRNA_C-tenellus_contig6859.1.1 vs. uniprot
Match: A0A7S2G205_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G205_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.140e-12
Identity = 54/183 (29.51%), Postives = 86/183 (46.99%), Query Frame = 1
Query:   40 HFDRIVESSGWLTSQIIDIRMKQLQEQH-----------PYHIYLDTSFFGFLCPAHDEEGHFVVDYQRVKGWTKPSRLPTGRKTLFELEKVFIPINEGNIHWVLVVVDLVGKREGGEHHPSVSFFDSQGRNGIDYVEAIQEYLLSELSNRGEE--EELEALTLVSQPPLNAPKQFNNSDCGV 549
            H  R+  +S WL  ++I++ M  LQE+            P H +    F     P    +G    DY ++K W++  +  T +  +FEL+K+FIP+N  N HW L V  +  K+          ++DS G +G DY+  +++Y   E   +G+   E +     V     N P+Q N SDCGV
Sbjct:  102 HTQRLSPAS-WLFDEVINVYMFLLQERDDELRRQDPTRKPSHFFNSYFFEKMFEP----DGRNRYDYSQIKRWSRKIKSTTPKGDVFELDKMFIPVNISNSHWTLAVAFVKEKK--------FVYYDSMGGSGRDYIAGLKQYFKDEAKAKGKANWETIVDDWEVVLGSRNTPQQSNGSDCGV 271          
BLAST of mRNA_C-tenellus_contig6859.1.1 vs. uniprot
Match: A0A540LRQ6_MALBA (ULP_PROTEASE domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540LRQ6_MALBA)

HSP 1 Score: 71.6 bits (174), Expect = 1.590e-9
Identity = 59/195 (30.26%), Postives = 90/195 (46.15%), Query Frame = 1
Query:   52 IVESSGWLTSQIIDIRMKQLQEQ------HPYHIYLDTSFFGFLCPAHDEEGHFVVD----YQRVKGWTKPSRLPTGRKTLFELEKVFIPINEGNIHWVLVVVDLVG---KREGGEHH-----PSVSFFDSQGRNGIDYVEAIQEYLLSELSNRGEEEELEALTLVSQ---PPLNAPKQFNNSDCGVLMLHVIEV 573
            +++   ++   IID  +K L+ Q      H YH +   SFF       D++   V D    +QRV+ WT+       +  LFE + +FIPIN  N+HW L+V+  +G   K  GG+       P +   DS   +       IQ YL  E   R +E   E  +        PL  P+Q N+ DCG+ +LH +E+
Sbjct:   46 LLQPETFINDTIIDFYIKYLKNQIQPEKRHRYHFF--NSFFFRKLADLDKDPSSVSDGRAAFQRVRKWTR-------KVDLFEKDYIFIPINF-NLHWSLIVICHLGEVPKHNGGDSGNLLKVPCILHMDSIKGSHTGLKNLIQSYLWEEWKERKKETSEEISSKFHNLRFVPLELPQQENSFDCGLFLLHYLEL 230          
BLAST of mRNA_C-tenellus_contig6859.1.1 vs. uniprot
Match: A0A498HQQ8_MALDO (ULP_PROTEASE domain-containing protein n=5 Tax=Maleae TaxID=721813 RepID=A0A498HQQ8_MALDO)

HSP 1 Score: 71.2 bits (173), Expect = 2.410e-9
Identity = 58/199 (29.15%), Postives = 94/199 (47.24%), Query Frame = 1
Query:   22 IRLCQSHFDRIVESSGWLTSQIIDIRMKQLQEQHPYHIYLDTSFFGFLCPAHDEEGHFVVD----YQRVKGWTKPSRLPTGRKTLFELEKVFIPINEGNIHWVLVVVDLVG---KREGGEHH-----PSVSFFDSQGRNGIDYVEAIQEYLLSELSNRGEEEELEALTLVSQ---PPLNAPKQFNNSDCGVLMLHVIEV 573
            I+L   H  + +  +G L +  +  ++ Q +++H YH +   SFF       D++   V D    ++RV+ WT+       +  LFE + +FIPIN  N+HW L+V+  +G   K  GG+       P +   DS   +       IQ YL  E   R +E   E  +        PL  P+Q N+ DCG+ +LH +E+
Sbjct:  393 IKLADIHLSQTLRKAGALCTGYLKNQI-QPEKRHRYHFF--NSFFFRKLADLDKDPSSVSDGRAAFERVRKWTR-------KVDLFEKDYIFIPINF-NLHWSLIVICHLGEVPKHNGGDSGNLLKVPCILHMDSIKGSHTGLKNLIQSYLWEEWKERKKETSEEISSKFHNLRFVPLELPQQENSFDCGLFLLHYLEL 580          
BLAST of mRNA_C-tenellus_contig6859.1.1 vs. uniprot
Match: F4QFL5_CAVFA (ULP_PROTEASE domain-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QFL5_CAVFA)

HSP 1 Score: 70.5 bits (171), Expect = 3.750e-9
Identity = 61/202 (30.20%), Postives = 94/202 (46.53%), Query Frame = 1
Query:   22 IRLCQSHFDRIVESSGWLTSQIIDIRMKQLQEQ--HP-----YHIYLDTSFFGFLCPAHDEEGHFVVDYQRVKGWTKPSRLPTGRKTLFELEKVFIPINEGNIHWVLVVVDLVG---KREGGEHHPSVSFFDSQGRNGIDYVEAIQEYLLSE------LSNRGE--EEELEALTLVSQPPLNAPKQFNNSDCGVLMLHVIEV 573
            +R+ +    R+ ESS +L   +ID  ++ ++    HP     +H +  T F+  L   + EE      Y+++  WT+ +        +F  + +FIPINE N HW L +V   G   K    E+ P +   DS G N   +   I+ YL  E      + + G   E E  A TL +   +  PKQ N  DCGV +LH IE+
Sbjct:  315 VRITEDDLLRL-ESSNYLNDNLIDFYIRYIKNHYVHPRDENRFHFF-STFFYNNLSLKNIEEA-----YKKISKWTRDT-------DIFSKDFLFIPINE-NFHWTLCIVSFCGQDPKTSTNENRPLIMHLDSLGGNKNAFHNKIRSYLQMEWKYKKSIPSNGTIPEREFNATTLPAAR-VYIPKQDNLYDCGVFLLHYIEL 500          
BLAST of mRNA_C-tenellus_contig6859.1.1 vs. uniprot
Match: UPI000B789BDD (probable ubiquitin-like-specific protease 2B isoform X1 n=7 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B789BDD)

HSP 1 Score: 69.7 bits (169), Expect = 7.070e-9
Identity = 60/205 (29.27%), Postives = 97/205 (47.32%), Query Frame = 1
Query:   22 IRLCQSHFDRIVESSGWLTSQIIDIRMKQL------QEQHPYHIYLDTSFFGFLCPAHDEEGHFVVD----YQRVKGWTKPSRLPTGRKTLFELEKVFIPINEGNIHWVLVVVDLVGKREGGEHH--------PSVSFFDSQGRNGIDYVEAIQEYLLSELSNRGEE--EELEALTL-VSQPPLNAPKQFNNSDCGVLMLHVIEV 573
            + +C+  FD +++   ++   IID  +K L      +E+H +H +   SFF       D++   V D    + RV  WT+       +  LF  + VFIP+N  N+HW L+V+   G+  G E          P +   DS   N       +Q YL  E  +R +E  E+L +  L +   PL  P+Q N+ DCG+ +LH +E+
Sbjct:  349 VSICKRDFD-LLQPETFINDTIIDFYIKYLKNQIPPEEKHRFHFF--NSFFFRKLADLDKDPSSVSDGRAAFLRVHKWTR-------KVDLFGKDYVFIPVNF-NLHWSLLVICHPGEVAGFEDEDLGKSLRVPCILHMDSIKGNHAGLKNLVQSYLWEEWKSRQKETSEDLSSKFLNLRFVPLELPQQENSFDCGLFLLHYLEL 542          
BLAST of mRNA_C-tenellus_contig6859.1.1 vs. uniprot
Match: A0A7R9WT45_9STRA (Hypothetical protein (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WT45_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 9.870e-9
Identity = 43/124 (34.68%), Postives = 65/124 (52.42%), Query Frame = 1
Query:  181 EEGHFVVDYQRVKGWTKPSRLPTGRKTLFELEKVFIPINEGNIHWVLVVVDLVGKREGGEHHPSVSFFDSQGRNGIDYVEAIQEYLLSELSNRGEEEELEALTLVSQPPLN-APKQFNNSDCGV 549
            +EG +  +Y+ VK W+K  ++P   K +F L+KVF PIN+G +HW+  V  +  KR        +  FDS G  G +Y+ +I  YL  E  ++ + E  +       P  N  P+Q N  DCGV
Sbjct:   79 KEGEY--EYRNVKRWSK--KVPG--KNIFNLDKVFFPINQGGMHWICAVAFMQDKR--------IEIFDSMGSAGTEYLVSIFAYLKDEHKDKQKSELPDQDKWELVPCRNDTPRQRNGFDCGV 188          
BLAST of mRNA_C-tenellus_contig6859.1.1 vs. uniprot
Match: A0A251NQM1_PRUPE (ULP_PROTEASE domain-containing protein n=17 Tax=Prunus TaxID=3754 RepID=A0A251NQM1_PRUPE)

HSP 1 Score: 68.6 bits (166), Expect = 1.500e-8
Identity = 56/195 (28.72%), Postives = 91/195 (46.67%), Query Frame = 1
Query:   52 IVESSGWLTSQIIDIRMKQLQ------EQHPYHIYLDTSFFGFLCPAHDEEGHFVVD----YQRVKGWTKPSRLPTGRKTLFELEKVFIPINEGNIHWVLVVVDLVGK------REGGEHH--PSVSFFDSQGRNGIDYVEAIQEYLLSELSNRGEEEELEALTLVSQ---PPLNAPKQFNNSDCGVLMLHVIEV 573
            +++   ++   IID  +K L+      E+H +H +   SFF       D++   V D    +QRV+ WT+       +  LFE + +FIP+N  N+HW L+V+   G+       + G+ H  P +   DS   +       IQ YL  E   R +E   E  +        PL  P+Q N+ DCG+ +LH +E+
Sbjct:  167 LLQPETFINDTIIDFYIKYLKNQIQSREKHRFHFF--NSFFFRKLADLDKDPSSVSDGRAAFQRVRKWTR-------KVDLFEKDYIFIPVNF-NLHWSLIVICHPGEVPRLNDGDSGKSHKVPCILHMDSIKGSHTGLKNLIQSYLWEEWKERKKEASEEMSSKFHNLRFVPLELPQQENSFDCGLFLLHYLEL 351          
BLAST of mRNA_C-tenellus_contig6859.1.1 vs. uniprot
Match: A0A7C9EJ50_OPUST (Apyrase (Fragment) n=2 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9EJ50_OPUST)

HSP 1 Score: 67.8 bits (164), Expect = 2.650e-8
Identity = 60/209 (28.71%), Postives = 97/209 (46.41%), Query Frame = 1
Query:   52 IVESSGWLTSQIIDIRMKQL------QEQHPYHIYLDTSFFGFLCPAHDEEGHFVVD----YQRVKGWTKPSRLPTGRKTLFELEKVFIPINEGNIHWVLVVVDLVGK--------REGGEHHPSVSFFDSQGRNGIDYVEAIQEYLLSELSNRGEE--EELEA----LTLVSQPPLNAPKQFNNSDCGVLMLHVIEVRWIQQGTGIFK 606
            ++E   ++   IID  +K L      QE+H YH +   SFF       D+      D    +QRV+ WT+       +  +FE + +FIP+N  N+HW L+V+   G+         +     P +   DS   +     + +Q YLL E   + +E  EE+ +    L  +S   L  P+Q N SDCG+ +LH +E+ +I +  G F 
Sbjct:  378 LLEPETFINDTIIDFYIKYLKNQIPPQERHRYHFF--NSFFFRKLADLDKNPTNAFDSKAAFQRVRKWTR-------KVNIFEKDYIFIPVNY-NLHWSLIVICHPGEVANFNCESMDESLKVPCILHMDSIRGSHTGLKDLVQSYLLEEWKEKQKETSEEISSNFVNLRFLS---LELPQQENCSDCGLFLLHYVEL-FIAEAPGNFN 572          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6859.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVW5_9PHAE1.490e-6657.00ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
A0A8J2T146_9STRA1.930e-1333.93Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2G205_9STRA1.140e-1229.51Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A540LRQ6_MALBA1.590e-930.26ULP_PROTEASE domain-containing protein n=1 Tax=Mal... [more]
A0A498HQQ8_MALDO2.410e-929.15ULP_PROTEASE domain-containing protein n=5 Tax=Mal... [more]
F4QFL5_CAVFA3.750e-930.20ULP_PROTEASE domain-containing protein n=1 Tax=Cav... [more]
UPI000B789BDD7.070e-929.27probable ubiquitin-like-specific protease 2B isofo... [more]
A0A7R9WT45_9STRA9.870e-934.68Hypothetical protein (Fragment) n=1 Tax=Craspedost... [more]
A0A251NQM1_PRUPE1.500e-828.72ULP_PROTEASE domain-containing protein n=17 Tax=Pr... [more]
A0A7C9EJ50_OPUST2.650e-828.71Apyrase (Fragment) n=2 Tax=Opuntia streptacantha T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6859contigC-tenellus_contig6859:2250..6239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3760.EMJ08418
PFAMsPeptidase_C48
Model size1420
Max annot lvl35493|Streptophyta
KEGG koko:K08596
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009987,GO:0016787,GO:0016926,GO:0016929,GO:0018193,GO:0018205,GO:0019538,GO:0019783,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0070011,GO:0070137,GO:0070139,GO:0070646,GO:0070647,GO:0071704,GO:0140096,GO:1901564
Exons4
Evalue3.35e-10
EggNOG OGsCOG5160@1|root,KOG0779@2759|Eukaryota,37Q7K@33090|Viridiplantae,3GBT2@35493|Streptophyta,4JN5M@91835|fabids
EC3.4.22.68
Descriptionprotease
Cds size513
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6859.1.1prot_C-tenellus_contig6859.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6859 3058..5544 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789997.3521998-UTR-C-tenellus_contig6859:2249..30571680789997.3521998-UTR-C-tenellus_contig6859:2249..3057Choristocarpus tenellus KU2346UTRC-tenellus_contig6859 2250..3057 -
1680789997.3968754-UTR-C-tenellus_contig6859:5544..55591680789997.3968754-UTR-C-tenellus_contig6859:5544..5559Choristocarpus tenellus KU2346UTRC-tenellus_contig6859 5545..5559 -
1680789997.4080508-UTR-C-tenellus_contig6859:6155..62391680789997.4080508-UTR-C-tenellus_contig6859:6155..6239Choristocarpus tenellus KU2346UTRC-tenellus_contig6859 6156..6239 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789997.3636668-CDS-C-tenellus_contig6859:3057..32491680789997.3636668-CDS-C-tenellus_contig6859:3057..3249Choristocarpus tenellus KU2346CDSC-tenellus_contig6859 3058..3249 -
1680789997.3787553-CDS-C-tenellus_contig6859:4734..49711680789997.3787553-CDS-C-tenellus_contig6859:4734..4971Choristocarpus tenellus KU2346CDSC-tenellus_contig6859 4735..4971 -
1680789997.3879411-CDS-C-tenellus_contig6859:5460..55441680789997.3879411-CDS-C-tenellus_contig6859:5460..5544Choristocarpus tenellus KU2346CDSC-tenellus_contig6859 5461..5544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6859.1.1

>prot_C-tenellus_contig6859.1.1 ID=prot_C-tenellus_contig6859.1.1|Name=mRNA_C-tenellus_contig6859.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=171bp
MKQLQEQHPYHIYLDTSFFGFLCPAHDEEGHFVVDYQRVKGWTKPSRLPT
GRKTLFELEKVFIPINEGNIHWVLVVVDLVGKREGGEHHPSVSFFDSQGR
NGIDYVEAIQEYLLSELSNRGEEEELEALTLVSQPPLNAPKQFNNSDCGV
LMLHVIEVRWIQQGTGIFKG*
back to top

mRNA from alignment at C-tenellus_contig6859:2250..6239-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6859.1.1 ID=mRNA_C-tenellus_contig6859.1.1|Name=mRNA_C-tenellus_contig6859.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3990bp|location=Sequence derived from alignment at C-tenellus_contig6859:2250..6239- (Choristocarpus tenellus KU2346)
ACAATCCGTGTGATAAAGGGGATTAGACTGTGTCAATCACATTTTGATCG TATTGTGGAGAGCTCAGGCTGGCTCACTTCACAGGTCTGTCTTGTACTCA TTCCCAAGCACTCTCAACTGACAATGTATGCATCATGCTGACATCTATCT CTACAGCATTTTTTGTTTTTTGCAAGTGATTGATTGAGAATACCTTTTGG AGTTGGATGCGATTTGTTGGACTTTTAGCTGGGTTCTTGTCTGATGGTGA TGCGTTGTCACCTAGGAACAAGTTGTTCTTTTGAACGCTGTATATTGCCC ATATCAGGGCCACAAAAACTTGTCATGGTGCATGCACAATAAGCTATAGC CGCTGTTGCCACACGCTGAAAGCAGTCGCATGATGTGCACCCTCACAGTG CACATCATGTGACCGGTAAGTGGCGCAAATCTTGTTTGTGTGTTTGATGT TGTCCAAATTATTATGACAGATGACTGCTCAAGATATTGTTCAGACCTTT TGATCATTGCATTGTCACTGCTTCTTAGAAGGTATCGTGAGTGTTGACTT CTGTTCCTCTTTGGGAACTCAGCTATGGTGCAGGCATGCGTGTTCTGCGT AAAATGCACCCAGACTGTTTCACATGCTCACTCCCGGATACATGCCCACA CGATCACCCTGATGGCTGTTCTGGTTGCAGATCATTGATATTCGCATGAA GCAGCTCCAGGAGCAACACCCCTACCACATCTACCTAGATACATCATTTT TTGGCTTCCTGTGCCCTGCCCATGATGAGGTGCAGACCCTTTTGAGAGTG TGTCTGGATTATACTATCAATCTATATTTTATTCAAGGGGAAGAGGAAGG TTAATTGAGGTGCATACCTGTTTTGTTACTTTGAAATGTGTATTTTGAAG ATTTGCCGTGAGGAACACGTCTCGTTAGATTTCATGCTATTTTTTTATGG CCTTTTTTGGTTGAGAGTGGGAGAGAGTTAATGTGTTGGTGGAATCAGGA TGTGTGTAAGGGGCAAATACCCTACCGTGTACTATCCGACCAGCTTTTGT CTCTGTTCACAAACCACATGAGGAAACACAGTTGGTTTATTCGTTTTTTT TTCTGTTTTACCCAATGAGATGTGATCGTCCAATCCACTACTCTCTTCCC AATGCTGTGCCCATCTGCATGGCCTTGTATATGCTTGCAATGCCACCAGT CAGCGCCTGTCCCCTGTCCCCCTGTCTGCCATGAAACCTGTGCACACATG CACGTTACACTACCACAGGAAGGTCATTTTGTAGTAGACTACCAGCGAGT GAAGGGCTGGACCAAACCGTCTCGTCTCCCTACTGGTAGGAAGACATTGT TTGAGCTGGAAAAGGTTTTCATCCCTATAAATGAAGGAAATATCCACTGG GTGCTTGTGGTAGTGGATCTGGTGGGAAAAAGGGAAGGAGGAGAGCATCA CCCGTCAGTATCCTTCTTTGATTCGCAAGGAAGGAATGGGATTGACTATG TTGAGGTGCGGGAAGATGGGGGGGTGGAAAGGGGGGGTGGGTGGGGTGGG GTGGGGGGGTCGATTTACTGCTTTGCGGAGATAGTGTGGAATATGTGAGC TGTTGGGCGAAATAATCTTGGTGTGGTTGATGTTTCCATACTTTTGTGTC CAGGTCATGCTGATATTATAGTGGTAGGAGTGGTCGAGTAGGCGAGGTTC CAATTCCCGTCCGATTATCTCAATCTGGTATACTTCATACTACAGAGTAT ATATACTATTTTCATTGGTCTAAATTTTGCTTTCGTACTCTGTAGTCCTT ATCTTGATTTTTTTTGTTTTATGTATTTATGATGCCATGATGCTGACTTT TGTAGTAATACATGATACTTCCAACAAGACAGTGATGATGTTTACTTTGT ACTCAAGAGTACTTCAGTAAGTTTTTTCTTAGGCTGGGAAGGATCAGCAA GTGAGTTGCTGGGTGCTCTCTGCTCATTTGTACATTGATTATTTGTTACA TTTTTCTCCTTTCAGTATTCAAGGCCCTGAGGAAGGAGGGTGATGGTAGA TATTGAGAGTAGCAGAATTTTACGCAATAGGGTTTTCATGGGTGTGTAGG TACTGGGGGTGGGGGATTCTGTTAAGGAACACAGGACCACTTCAGTCACT CTTGGTCACTTTCTGATCGCAATGGGAATCTAACCCTATATGTTCTTGTA TTTGGTTTTGTTCAATATCTCTAGTGCATCATATGGTCATTGCTTCAAGG CAGTATACCCACATCACTCAATAAGAACCATGAAAATGGTGAGCTGATTG GATCTACCAATTGCCATGTGCATTTGAAATACTCTCAACTCTTGAATATT TTTCCAATATTATTATTTTAGTACCCTTTATTGTGAAGGAATTTTTTAAT CTTTTCTTTGCATTTTTGATATCCTTTTTGTTGTGCCAGTCGCTTTCAAA TGGAGAACAGTCTGTTGATACATTGGATGTTATGATGAGAAAAATCAGGG TTAGGGTTAGAATAGTTGGAGGTGCCCAGTGTGGCAAGGAGAGAAAAGGT AGTAATTGAGAGGACTAGGGGGAATGGGATATCATAGTGAGTTAGGGGGA GAGGAAGGAATAACTTTTACGGAATCGTTTTTGTAAATATTGTGCTAGTT AGAGCACTGGTTCTTCAGAGGACAGGTTCTTTTCCTAAGGTTTGACTGCC AGTCATCATTTGGATTCCTTACTTCCCAATTCTACTCCTTTGGTTCATCC CTATAATAGCATACCTGTTGTCCCCTGCTCCCATCTTCCCCTGCACATGC ACACCTCTCCTTCCCCCTTTGAGTCCTCTAATACCCTTACATCTGTGCTA TTGTGTGTGCTATCCCAACTGCCCCTCCCCCACTCATCTCGGGGTATGCA CCATAGTCACTCTCAACATCACCCTACTCTTGGAATTGATGGTGCTCCCA CCCCACATGTGTGCATTTGTGTCTGGGGTTGTTTGTCCAGGCGATCCAGG AGTACCTCCTGAGCGAACTCAGCAACAGGGGTGAGGAGGAGGAACTGGAG GCACTCACACTGGTGTCTCAGCCTCCACTAAACGCACCAAAGCAGTTCAA CAATAGTGACTGTGGTGTGCTGATGCTTCATGTCATTGAGGTAAGATGGA TCCAGCAAGGAACAGGAATATTCAAAGGGTAGAGTATGGACCTAGGGTCC TGGAAGTGAGGGTGCTGGGACATTGTTAGATCGTTGTACTACTTTGTGCC AAAGTATGAATTTGCAATCTAACGCTTGAGCACTGTTTTGTAGATGTATC TATTGCATGCCCAAGGTGGGAGTATTAGGATGGAAGTGGCACTATCTTCA GAGGGTTGTGTTGGTGCTCAGCACTGTTCTGTACAGTGTATCTGTGAGGC GTCTGTAAACTAAGATATTTCTAGAGATTCATGGCATGAAGTTGGAAGAT GGGGCTTGGGCTAGATTTGGCTCACTCTTGCTTTACTTGCATTGACATGC CCTAAAGTGGCAACCTTGCTATGACCATGAGGCCGGCTCCTTTAACCTCA CTGCAGACTGTTTGGAGCAAGGATGAGGTAGATCAGCTTCTCAATGGGAC ATCATATCATCAATGTAAAATTGATAAATAAGAAATCATCTACATGCTAA TACAAAAGGGCACACCGAATAGTTTTTAGGAGGGGGAAGGGGAAGACAGG GCGAGGTTTCAAGGAATGCATTGGGATTGCAAGGGTATCTTTGAATGGGA CATGCTCAGGCAATATTGAGTGTGTACTCATTAAGGCACAATTTGCTGTT TCATTTTTTGGCAGTTCATGTGGACAGCTCTAGGAAGCGCATGCCTAATG AGAGCGACATTCTGGCAATGCTGATGGCGGATGCTACCTAGCTGTCCTTA AACTAGAGGGAAAGTGTGCCTCTTGACATTTTTCCTGTTATCATATACCC TCCATTGAAGGCAATAGCCAGATGTGTGCTTTACTAGGAG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig6859:2250..6239-

>mRNA_C-tenellus_contig6859.1.1 ID=mRNA_C-tenellus_contig6859.1.1|Name=mRNA_C-tenellus_contig6859.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=513bp|location=Sequence derived from alignment at C-tenellus_contig6859:2250..6239- (Choristocarpus tenellus KU2346)
ATGAAGCAGCTCCAGGAGCAACACCCCTACCACATCTACCTAGATACATC
ATTTTTTGGCTTCCTGTGCCCTGCCCATGATGAGGAAGGTCATTTTGTAG
TAGACTACCAGCGAGTGAAGGGCTGGACCAAACCGTCTCGTCTCCCTACT
GGTAGGAAGACATTGTTTGAGCTGGAAAAGGTTTTCATCCCTATAAATGA
AGGAAATATCCACTGGGTGCTTGTGGTAGTGGATCTGGTGGGAAAAAGGG
AAGGAGGAGAGCATCACCCGTCAGTATCCTTCTTTGATTCGCAAGGAAGG
AATGGGATTGACTATGTTGAGGCGATCCAGGAGTACCTCCTGAGCGAACT
CAGCAACAGGGGTGAGGAGGAGGAACTGGAGGCACTCACACTGGTGTCTC
AGCCTCCACTAAACGCACCAAAGCAGTTCAACAATAGTGACTGTGGTGTG
CTGATGCTTCATGTCATTGAGGTAAGATGGATCCAGCAAGGAACAGGAAT
ATTCAAAGGGTAG
back to top