mRNA_C-tenellus_contig6847.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6847.1.1
Unique NamemRNA_C-tenellus_contig6847.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig6847.1.1 vs. uniprot
Match: A0A6H5KY73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY73_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 9.640e-9
Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:  286 GLPIECRTTPNSQGDTVCCKPFASPCESSMACCSGHCHEHYNRCTEVM 429
            G   +C  TP S GDTVCCKPFA+PC+S  ACCSG+C   + RC + +
Sbjct:   97 GFRTQCEKTPFSGGDTVCCKPFATPCDSDKACCSGNCDVSHTRCDDAI 144
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BLAST of mRNA_C-tenellus_contig6847.1.1 vs. uniprot
Match: D7FIV4_ECTSI (NHL repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV4_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.240e-8
Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:  286 GLPIECRTTPNSQGDTVCCKPFASPCESSMACCSGHCHEHYNRCTEVM 429
            G   +C  TP S GDTVCCKPFA+PC+S  ACCSG+C   + RC + +
Sbjct:   97 GFRTQCEKTPFSGGDTVCCKPFATPCDSDKACCSGNCDASHARCDDAV 144
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6847.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KY73_9PHAE9.640e-954.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIV4_ECTSI1.240e-854.17NHL repeat-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6847contigC-tenellus_contig6847:2008..3365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size954
Hectar predicted targeting categoryother localisation
Exons4
Cds size582
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789996.419124-CDS-C-tenellus_contig6847:2007..23851680789996.419124-CDS-C-tenellus_contig6847:2007..2385Choristocarpus tenellus KU2346CDSC-tenellus_contig6847 2008..2385 -
1680789996.4360228-CDS-C-tenellus_contig6847:2526..26731680789996.4360228-CDS-C-tenellus_contig6847:2526..2673Choristocarpus tenellus KU2346CDSC-tenellus_contig6847 2527..2673 -
1680789996.4463477-CDS-C-tenellus_contig6847:2907..29641680789996.4463477-CDS-C-tenellus_contig6847:2907..2964Choristocarpus tenellus KU2346CDSC-tenellus_contig6847 2908..2964 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789996.4563165-UTR-C-tenellus_contig6847:2964..31391680789996.4563165-UTR-C-tenellus_contig6847:2964..3139Choristocarpus tenellus KU2346UTRC-tenellus_contig6847 2965..3139 -
1680789996.4733105-UTR-C-tenellus_contig6847:3168..33651680789996.4733105-UTR-C-tenellus_contig6847:3168..3365Choristocarpus tenellus KU2346UTRC-tenellus_contig6847 3169..3365 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6847.1.1prot_C-tenellus_contig6847.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6847 2008..2964 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6847.1.1

>prot_C-tenellus_contig6847.1.1 ID=prot_C-tenellus_contig6847.1.1|Name=mRNA_C-tenellus_contig6847.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=194bp
MACCSGHCHEHYNRCTEVMGEGTETTSHGVNTKGPTPSPTCTLLYSSGSI
LTVTIAEARVEDVISDIEGNIMYSVGFQTGVGSVDDILRIKSNGEGPEVI
FDGLGPILALALEPSGDVLFSQDIQDGGAGVYRISMTEDTEGLLVPGDPV
IVASGLGKFLPGLAVNNAGDIFVSRGTKGITMLPVGGGVQVQN*
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mRNA from alignment at C-tenellus_contig6847:2008..3365-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6847.1.1 ID=mRNA_C-tenellus_contig6847.1.1|Name=mRNA_C-tenellus_contig6847.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1358bp|location=Sequence derived from alignment at C-tenellus_contig6847:2008..3365- (Choristocarpus tenellus KU2346)
CGGGACATCTCTGACGGGAAAGTCCTTTCTTGCAAACTCCTAAAACCGAT
ATCTATATTAACACCTTTCTGAAGATTACTTGGTGAACCTTGAGACCTTG
GAGCAACACGACTCCTCGTTTCATTAGTGAGGCCCAACCTACGTACTGAG
TCCTAGACGCCACCCAAGTGTCGTTAACTGGGGAATGGTGGTATGTTTAC
CCATCAGATAGAGCATCATCCATATCAACGTATGCGTCTTTGAAGTTCTG
CTTCACAAGAAGATCAATTAATCTCTGACTCTACTATCGTTTCCATTCAT
GAGCCTAGAACGAAGGTCTGCCAATTGAATGCAGAACCACCCCAAATTCC
CAAGGCGACACAGTCTGTTGCAAGCCCTTCGCATCCCCATGCGAGTCAAG
CATGGCATGTTGCTCAGGCCACTGTCATGAACACTACAATCGCTGCACAG
AAGTCATGGTGAGCACATCTGATGGGCCAACTTAGATGGTAAAGGGAACC
TCAGCAATAGGAACAGTGTGCACTTGAAAACGGCTAATTGAAAGGGTACT
TCTAGGGATGGGTTGTGATATTGTCCGTATGTTTTTCCCAGGAGTCCCAA
TCAACAATGTCCTCACTCATAGCTAGTCGAGCACCACATCACTTCATCTA
TGCACTTCTTAATGGAAAATGCACATTGGTGATATTTCACAGGGGGAGGG
AACGGAAACAACGTCACATGGAGTCAACACTAAGGGACCGACGCCCTCTC
CCACATGCACACTTCTCTACAGTTCGGGCTCAATTCTCACTGTGACCATA
GCAGAAGCACGGGTGGAGGATGTCATTTCGGACATTGAGGTAGGTTACTT
CCGGTAATCGGCTGTTTACTTCGTGAATTGAAGTATTACGCACACTCAAT
GATCCTTCTACACTCCAGTATCTCTGGATAAATTGTTCTTACTGCCACCA
CTTATATAACGGCTGACCCCTCCTCTACAGGGTAACATAATGTACTCTGT
TGGATTCCAGACAGGTGTGGGAAGTGTGGATGACATATTGCGCATAAAAT
CGAATGGAGAGGGACCTGAGGTTATCTTCGATGGCCTTGGTCCCATCCTA
GCTCTCGCACTTGAGCCCTCTGGGGATGTTCTATTCTCCCAAGACATACA
AGATGGAGGAGCGGGTGTCTATCGAATTTCCATGACAGAAGACACAGAGG
GTTTATTGGTGCCAGGGGATCCAGTGATTGTTGCTTCTGGACTCGGGAAG
TTTCTTCCAGGCCTTGCTGTCAACAACGCCGGAGACATCTTTGTGTCCAG
AGGGACTAAGGGTATCACAATGCTGCCCGTGGGAGGCGGAGTCCAGGTTC
AAAATTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig6847:2008..3365-

>mRNA_C-tenellus_contig6847.1.1 ID=mRNA_C-tenellus_contig6847.1.1|Name=mRNA_C-tenellus_contig6847.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=582bp|location=Sequence derived from alignment at C-tenellus_contig6847:2008..3365- (Choristocarpus tenellus KU2346)
ATGGCATGTTGCTCAGGCCACTGTCATGAACACTACAATCGCTGCACAGA
AGTCATGGGGGAGGGAACGGAAACAACGTCACATGGAGTCAACACTAAGG
GACCGACGCCCTCTCCCACATGCACACTTCTCTACAGTTCGGGCTCAATT
CTCACTGTGACCATAGCAGAAGCACGGGTGGAGGATGTCATTTCGGACAT
TGAGGGTAACATAATGTACTCTGTTGGATTCCAGACAGGTGTGGGAAGTG
TGGATGACATATTGCGCATAAAATCGAATGGAGAGGGACCTGAGGTTATC
TTCGATGGCCTTGGTCCCATCCTAGCTCTCGCACTTGAGCCCTCTGGGGA
TGTTCTATTCTCCCAAGACATACAAGATGGAGGAGCGGGTGTCTATCGAA
TTTCCATGACAGAAGACACAGAGGGTTTATTGGTGCCAGGGGATCCAGTG
ATTGTTGCTTCTGGACTCGGGAAGTTTCTTCCAGGCCTTGCTGTCAACAA
CGCCGGAGACATCTTTGTGTCCAGAGGGACTAAGGGTATCACAATGCTGC
CCGTGGGAGGCGGAGTCCAGGTTCAAAATTGA
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