mRNA_C-tenellus_contig6822.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6822.1.1
Unique NamemRNA_C-tenellus_contig6822.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig6822.1.1 vs. uniprot
Match: D8LCD7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCD7_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 4.460e-22
Identity = 64/126 (50.79%), Postives = 78/126 (61.90%), Query Frame = 1
Query:    1 MKFWSVVLVALLGLVSSTEGFVLAP--TQAFVRPVVGRATMSLSALPASQVVT--------ALHSSVL----AVSATVEPGTVNAPGWVLPLGAVLVILTAGAIPLLLKPGDDAAREMQDRDSDLW 336
            MK +S    A+L L S+ +GFV+AP  ++A V     + T  +S LPA+             L SSV+    A     EPGTV+APGWVLP GAV VILTAG IPLLLKPGDDAAR+MQ+RD  LW
Sbjct:    1 MKLFSTT-TAVLCLASAADGFVVAPPSSRASVAAPGRQCTRMVSPLPAAXXXXXXXXXXXXVLQSSVVPLIAAAGGVAEPGTVDAPGWVLPAGAVAVILTAGLIPLLLKPGDDAARDMQERDEGLW 125          
BLAST of mRNA_C-tenellus_contig6822.1.1 vs. uniprot
Match: A0A835YTE3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTE3_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 3.940e-14
Identity = 42/87 (48.28%), Postives = 57/87 (65.52%), Query Frame = 1
Query:   91 RPVVGRATMSLSALPASQVVTALHSSVLAVSATVEP---GTVNAPGWVLPLGAVLVILTAGAIPLLLKPGDDAAREMQDRDSDLWGK 342
            RPV  RA  + + +     +  L + + AV+   +    G+V APGWVLP+GA++V+ TA  IP+LLKPGDDAAR+MQ RD DLW K
Sbjct:   26 RPVQSRAAGTNTRMLPMGTIAELSNIITAVADEADDLNYGSVAAPGWVLPVGALVVVATA-LIPILLKPGDDAARDMQQRDKDLWDK 111          
BLAST of mRNA_C-tenellus_contig6822.1.1 vs. uniprot
Match: A0A7R9UEM1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEM1_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 7.480e-13
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 1
Query:  199 GTVNAPGWVLPLGAVLVILTAGAIPLLLKPGDDAAREMQDRDSDLWGK 342
            GTV APGWVLP+ A+L I    A+P+LL+PGDDAAREMQ+RD+  +GK
Sbjct:   49 GTVEAPGWVLPVVALLTISLTAAVPILLQPGDDAAREMQERDASFYGK 96          
BLAST of mRNA_C-tenellus_contig6822.1.1 vs. uniprot
Match: A0A7R9YFB9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFB9_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.530e-12
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 1
Query:  199 GTVNAPGWVLPLGAVLVILTAGAIPLLLKPGDDAAREMQDRDSDLWGK 342
            GTV APGWVLP+ A+L I    A+P+LL+PGDDAAREMQ+RD+  +GK
Sbjct:   79 GTVEAPGWVLPVVALLTISLTAAVPILLQPGDDAAREMQERDASFYGK 126          
BLAST of mRNA_C-tenellus_contig6822.1.1 vs. uniprot
Match: A0A8J5Y1Y5_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5Y1Y5_DIALT)

HSP 1 Score: 61.2 bits (147), Expect = 9.750e-10
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:  193 EPGTVNAPGWVLPLGAVLVILTAGAIPLLLKPGDDAAREMQDRDSDLWGK 342
            E G+V+AP ++LPLGA L ILTA  +P+ L+ GDDAAREMQ+RD+D +GK
Sbjct:   58 EYGSVSAPDFILPLGAGLAILTA-LLPIALRSGDDAAREMQERDADTFGK 106          
BLAST of mRNA_C-tenellus_contig6822.1.1 vs. uniprot
Match: A0A7S3NHI6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NHI6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 5.030e-9
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:  193 EPGTVNAPGWVLPLGAVLVILTAGAIPLLLKPGDDAAREMQDRDSDLWGK 342
            E G V+APGWVLPLGA   I TA  +PL L+ GDDA REM +RD D +GK
Sbjct:   88 EYGAVSAPGWVLPLGAFFAIATA-LLPLALRAGDDAQREMAERDVDSFGK 136          
BLAST of mRNA_C-tenellus_contig6822.1.1 vs. uniprot
Match: A0A7S2FK54_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FK54_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.230e-6
Identity = 39/101 (38.61%), Postives = 60/101 (59.41%), Query Frame = 1
Query:   19 VLVALLGLVSSTEGFVLAPTQAFVRPVVGRATMSLSALPASQVVTALHSSVLAVSAT--VEPGTVNAPGWVLPLGAVLVILTAGAIPLLLKPGDDAAREMQ 315
            VLVAL  L++S   F  +P  A         T +  ++  ++V   +  ++ A +A+   E G VNAPGWVLP+GA+ VILTA A+P+LL PG++A  + +
Sbjct:   16 VLVALGFLLASASAFTTSPRWAGHARARAVKTNAAPSMDMAEVFANVPQAIAAAAASDGYEYGAVNAPGWVLPVGALAVILTA-AVPVLLSPGEEALEQQR 115          
BLAST of mRNA_C-tenellus_contig6822.1.1 vs. uniprot
Match: A0A7S2SMI4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SMI4_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.560e-6
Identity = 23/48 (47.92%), Postives = 39/48 (81.25%), Query Frame = 1
Query:  190 VEPGTVNAPGWVLPLGAVLVILTAGAIPLLLKPGDDAAREMQDRDSDL 333
            ++ G+V AP WVLP+GA+  I+TA A+P+LL+PG++A  +M++++ DL
Sbjct:   57 IKYGSVQAPSWVLPVGALFTIITA-AVPILLRPGEEALDKMREQEEDL 103          
BLAST of mRNA_C-tenellus_contig6822.1.1 vs. uniprot
Match: W7T3F8_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T3F8_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 4.340e-6
Identity = 28/52 (53.85%), Postives = 35/52 (67.31%), Query Frame = 1
Query:  166 SVLAVSATVEPGTVNAPGWVLPLGAVLVILTAGAIPLLLKPGDDAAREMQDR 321
            SV A +   E G V APGWVLP+GA+L +  A AIPL L+PG +A  E +DR
Sbjct:   61 SVAAAADEYEYGAVAAPGWVLPVGALLTLGLAVAIPLALRPGTEAFEEERDR 112          
BLAST of mRNA_C-tenellus_contig6822.1.1 vs. uniprot
Match: A0A7S3TII5_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TII5_9SPIT)

HSP 1 Score: 51.6 bits (122), Expect = 5.760e-6
Identity = 38/110 (34.55%), Postives = 63/110 (57.27%), Query Frame = 1
Query:   13 SVVLVALLGLVSSTEGFVLAPT-QAFVRPVVGRATMSLSALPASQVVTALHSSVLAVSATVEPGTVNAPGWVLPLGAVLVILTAGAIPLLLKPGDDAAREMQDRDSDLWG 339
            S + +ALLGL+      V++P  +A V P    A ++L  +P+      L S ++        G V+APGWVLP+GA++VI T+  +P+LL PG++A  +M+  +   +G
Sbjct:    8 SPIFLALLGLLHGASALVMSPAVRAPVVPARCAAPVALD-MPSIYQAATLLSEIVDADGERAYGAVDAPGWVLPVGAIVVIGTS-LLPILLSPGEEALNKMRKDEQGRFG 115          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6822.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LCD7_ECTSI4.460e-2250.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YTE3_9STRA3.940e-1448.28Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9UEM1_9STRA7.480e-1364.58Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7R9YFB9_9STRA1.530e-1264.58Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A8J5Y1Y5_DIALT9.750e-1062.00Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A7S3NHI6_9STRA5.030e-962.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2FK54_9STRA1.230e-638.61Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2SMI4_9STRA1.560e-647.92Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7T3F8_9STRA4.340e-653.85Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S3TII5_9SPIT5.760e-634.55Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6822contigC-tenellus_contig6822:216..560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size345
Hectar predicted targeting categorychloroplast
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_004590.1
Cds size345
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789995.2670581-CDS-C-tenellus_contig6822:215..5601680789995.2670581-CDS-C-tenellus_contig6822:215..560Choristocarpus tenellus KU2346CDSC-tenellus_contig6822 216..560 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6822.1.1prot_C-tenellus_contig6822.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6822 216..560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6822.1.1

>prot_C-tenellus_contig6822.1.1 ID=prot_C-tenellus_contig6822.1.1|Name=mRNA_C-tenellus_contig6822.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=115bp
MKFWSVVLVALLGLVSSTEGFVLAPTQAFVRPVVGRATMSLSALPASQVV
TALHSSVLAVSATVEPGTVNAPGWVLPLGAVLVILTAGAIPLLLKPGDDA
AREMQDRDSDLWGK*
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mRNA from alignment at C-tenellus_contig6822:216..560+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6822.1.1 ID=mRNA_C-tenellus_contig6822.1.1|Name=mRNA_C-tenellus_contig6822.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=345bp|location=Sequence derived from alignment at C-tenellus_contig6822:216..560+ (Choristocarpus tenellus KU2346)
ATGAAGTTTTGGTCTGTGGTTTTGGTCGCCCTCTTGGGCCTTGTTAGTTC GACTGAGGGATTTGTCTTGGCCCCCACTCAAGCCTTCGTTCGGCCGGTTG TTGGCCGGGCAACTATGTCCCTTTCCGCCTTGCCCGCTTCCCAAGTCGTT ACTGCGTTGCATTCCTCAGTTCTTGCAGTGTCAGCCACAGTCGAGCCTGG CACAGTGAACGCACCAGGTTGGGTGCTTCCTTTGGGTGCTGTATTAGTCA TCTTGACAGCTGGTGCTATCCCTCTCCTACTCAAGCCTGGAGATGATGCA GCCAGGGAAATGCAGGACCGTGATTCGGACCTGTGGGGGAAGTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig6822:216..560+

>mRNA_C-tenellus_contig6822.1.1 ID=mRNA_C-tenellus_contig6822.1.1|Name=mRNA_C-tenellus_contig6822.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=345bp|location=Sequence derived from alignment at C-tenellus_contig6822:216..560+ (Choristocarpus tenellus KU2346)
ATGAAGTTTTGGTCTGTGGTTTTGGTCGCCCTCTTGGGCCTTGTTAGTTC
GACTGAGGGATTTGTCTTGGCCCCCACTCAAGCCTTCGTTCGGCCGGTTG
TTGGCCGGGCAACTATGTCCCTTTCCGCCTTGCCCGCTTCCCAAGTCGTT
ACTGCGTTGCATTCCTCAGTTCTTGCAGTGTCAGCCACAGTCGAGCCTGG
CACAGTGAACGCACCAGGTTGGGTGCTTCCTTTGGGTGCTGTATTAGTCA
TCTTGACAGCTGGTGCTATCCCTCTCCTACTCAAGCCTGGAGATGATGCA
GCCAGGGAAATGCAGGACCGTGATTCGGACCTGTGGGGGAAGTAG
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