mRNA_C-tenellus_contig6795.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6795.1.1
Unique NamemRNA_C-tenellus_contig6795.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig6795.1.1 vs. uniprot
Match: D7FM16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM16_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 8.620e-17
Identity = 55/118 (46.61%), Postives = 72/118 (61.02%), Query Frame = 2 
Query:  215 VAFQLGDSLLMGKCRVNEAYNYIWMGKYRTAKKMIAEQVGVARDGKDEELENYALIALLFLKRARAVNRRL---RLNSSGKRGCR--LGVRSDVGVEVRGEVVNPTVDNLHRVRALRI 553
            VA  LGD  L GKCRVN AYN IW+G+Y  A+++I  QV  +R  +DEELEN A IA  FLKR+R  N RL   +L+++   G R   G +S VG     + ++   D  HRVRAL +
Sbjct:   54 VATALGDLQLAGKCRVNVAYNCIWLGQYDEAQRIIHAQVAASRVIQDEELENIASIAGRFLKRSRRANHRLLQSQLDAASGGGSRGDEGAKSGVGQGWVRQRIDVRTDEWHRVRALPL 171
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BLAST of mRNA_C-tenellus_contig6795.1.1 vs. uniprot
Match: A0A6H5KXJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXJ1_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 5.710e-15
Identity = 57/120 (47.50%), Postives = 70/120 (58.33%), Query Frame = 2 
Query:  215 VAFQLGDSLLMGKCRVNEAYNYIWMGKYRTAKKMIAEQVGVARDGKDEELENYALIALLFLKRARAVNRRLRLN---------SSGKRGCRLGVRSDVGVEVRGEVVNPTVDNLHRVRAL 547
            VA  LGD  L GKCRVN AYNYIW+G+Y  A+++I  QV  +R  +DEELEN A IA  FLKR+R  N RL  +         SSG  G + GV       VR + ++   D  HRVRAL
Sbjct:  461 VAEALGDLRLAGKCRVNVAYNYIWLGQYDEAQRIINAQVAASRAIQDEELENMASIAGRFLKRSRRANHRLLQSQLDAPSGGGSSGDEGAKNGVSQGW---VR-QKIDVRTDEWHRVRAL 576
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BLAST of mRNA_C-tenellus_contig6795.1.1 vs. uniprot
Match: A0A835YTQ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTQ5_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.230e-5
Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 2 
Query:  215 VAFQLGDSLLMGKCRVNEAYNYIWMGKYRTAKKMIAEQVGVARDGKDEELENYALIALLF 394
            VA ++GD  L GKCRVNEAY  +W+G+Y  AK  I  Q  +A+   D+EL  +A   LL 
Sbjct:  218 VAAKMGDDTLRGKCRVNEAYGMVWLGRYADAKAAIKRQKALAQLRGDQELLAFASTTLLL 277
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6795.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FM16_ECTSI8.620e-1746.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXJ1_9PHAE5.710e-1547.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YTQ5_9STRA1.230e-546.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6795contigC-tenellus_contig6795:104..3109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FM16
PFAMsDUF4807
Model size1190
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.78e-16
EggNOG OGs2C1F8@1|root,2S2PK@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_010270.1
DescriptionDomain of unknown function (DUF4807)
Cds size312
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789992.6156642-UTR-C-tenellus_contig6795:103..3471680789992.6156642-UTR-C-tenellus_contig6795:103..347Choristocarpus tenellus KU2346UTRC-tenellus_contig6795 104..347 +
1680789992.657136-UTR-C-tenellus_contig6795:2475..31091680789992.657136-UTR-C-tenellus_contig6795:2475..3109Choristocarpus tenellus KU2346UTRC-tenellus_contig6795 2476..3109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789992.632367-CDS-C-tenellus_contig6795:347..4311680789992.632367-CDS-C-tenellus_contig6795:347..431Choristocarpus tenellus KU2346CDSC-tenellus_contig6795 348..431 +
1680789992.6449783-CDS-C-tenellus_contig6795:2247..24751680789992.6449783-CDS-C-tenellus_contig6795:2247..2475Choristocarpus tenellus KU2346CDSC-tenellus_contig6795 2248..2475 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6795.1.1prot_C-tenellus_contig6795.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6795 348..2475 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6795.1.1

>prot_C-tenellus_contig6795.1.1 ID=prot_C-tenellus_contig6795.1.1|Name=mRNA_C-tenellus_contig6795.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=104bp
MGKCRVNEAYNYIWMGKYRTAKKMIAEQVGVARDGKDEELENYALIALLF
LKRARAVNRRLRLNSSGKRGCRLGVRSDVGVEVRGEVVNPTVDNLHRVRA
LRI*
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mRNA from alignment at C-tenellus_contig6795:104..3109+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6795.1.1 ID=mRNA_C-tenellus_contig6795.1.1|Name=mRNA_C-tenellus_contig6795.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3006bp|location=Sequence derived from alignment at C-tenellus_contig6795:104..3109+ (Choristocarpus tenellus KU2346)
CCCGATTTGTTTGGACTGCTGCTGTCCTATGGATTTTTTATTAGGGTTAG
GGCTATATCTCCAGGGATTTTTTTTTTTTTAAGGAAAAAGTATTTTTTAT
TAAGAGTATTTTTGATACAGGTATCTCTCCCGTGAAGACCTGTACTACAT
TGTTTCCCAGAAACAAGGCTCTCACTTTGATATCCATTCTGGTAACTAAA
TGATCTACTGATAGGTAGCGTTTCAGCTGGGTGATTCGTTGCTCATGGGT
AAGTGTCGGGTTAACGAAGCTTACAATTACATCTGGATGGGAAAGTATCG
CACTGCCAAGAAGATGATCGCTGAACAGGTAAGCAAGCACACATTTCCAC
TGCCTTCTCCTTTTTGTAAACCTTTTTGCTAGGTTTATTTCTCACAACCC
CGGTATACTCTGGTAGTGCTGGCTATTGCTGTAGGTTTTGTTGACGTGTG
TGTGTGTGTGTGTGTGTGTGTGCTTTCCTATTCAGATTTTCTTTCAGTTG
AATTTTTCCTCCCCACCTGTACACACAGCATTTAGAAGTAGTAATAGTAG
TAGTAGTAGTAGTAGTAGTTTCAGTGAGAGCTATTCAACAACAGTAGTTG
AATATTTTTGTTGTTATTTGTTGTTTTTGACCATGGAGCTCTACTCAAAA
GCAGTAATTGAATATTTTTCTTTGTTTTTATTATTGTCATTGGCCACAGA
GCTATCCGACGACAGTTTCAAATCAGACTTTTTCGTTTTGTGCATCATTG
CCCCTGAGATAACACTGGACCTCAATGCCAGAAATGGGGTGATGAAAGGA
AATCACCCTCTCCTAAGAGTTGGTGGAGGCAGCGATCACTTGGCTGATAT
ATTTCCCCCGTTGTGGACTGAAGAGATTCGTTGGCAATAGAATCCTTGCT
TCAGAGTTACACCAGTCACAATTTAGACCTGTAACATTGATCTCCTAGGA
TTTTTGGGGGATGGGGATGGGGATGGGAATGGGGATGTTGCTGCGGTGGT
GAGCAGGAAGGCGTATTGCGCTGCCCAGATGTGAACCTTTGTAGCTGATC
ACAGTGGTCACTCATGATAAAGATGTACCACTTGCACGTATGCTTCAAAC
CGATAGTTGTTGAGTCAACCACAAGGCATAGAGCCGGTTAGAGCCGGTTC
AAGAATCGTACGTGAAGAGTCGGAGTGGAAGCACAGGTAGTCGATTCGAG
GATATGTGGGAGAGGTAGAGTTGGCACCCATACACCGTGTGAACACATGG
GGCACGAGGTGGCGAGCAGACCCACGATACAGACGAGAGCTGTTAGCGGC
GATGAGGTAGAGGTGATTAGAGCCAGCCGAATCTGTGGATTGTTTTTTTG
TTTTTTTGTTGTTGTTTGGAAGATTCATCAGATTGAGTACGTACACAAGT
AGACATTGGAGGATGAGACCAGGTACGTGCAACTGCAACAGGCACATGGA
CAGACAAATGGATGTGTTGTCTACTTATGTACTTGAAATTACTTTACTTT
GTGTTTGTGTTTGTGTTTGTGTGAACAGGGTCCGTAGCACTTTTGATAAA
AGAGATGGCGAAGTGGGAAGGAGAGCTCTGTGGAACATGACATAGATGCC
TTCCCATTACAACAGTTGTATTATATGTGGAAGTAAGAACCGCATGATTG
AGCTGGTGATACTGCTATAGAGTGGCATGGTAGAAACAGGGGATGGATTG
TAGGAGAGTCTGTGAGGCACAGACTGAACAATTCTTGATTCTTTTCCTGG
TCTTGTTTGCCCCATTGAGTCGACTCGTTGCGTACTTGGCAAAGCTATAG
TGGCTTTTTTTATGGATCTGGTACAAGAGGCCTGGTGGTTTAGGTTTAGG
GTTAGGGTTAGGGTTAGGGATTTGCTTCTCGTGGTGTACATGTATATGTT
AGTTTAATAAGATAATGATAAGATGATGCAGTAATCCGGGACATATGTGG
AAGTTAATGATTGTCACTGGACAGAAACAGTGTTTGGTAAGAACTATTGA
CTGCATGAAATGCTCTAGTGGTGTGATCACAGCACTCTTACACACACACA
CACACACACACACACACACACACACATAATGAATCATGTATCCAAGGAGA
GCAAGCCTAATACCATGCGCACTCTCCTATATGTAATCGCACAGGTTGGA
GTTGCACGGGATGGCAAGGATGAGGAGCTAGAGAATTACGCCTTGATTGC
ACTGCTGTTCCTCAAGAGGGCAAGGGCAGTTAATCGAAGGCTGAGGCTCA
ATTCCTCGGGAAAAAGAGGCTGCAGGTTGGGTGTGAGGAGTGATGTTGGT
GTTGAGGTTAGGGGGGAGGTGGTGAACCCTACAGTGGATAATCTCCACCG
TGTGCGAGCCCTTCGAATATGAGTGCTGTGCTGGGGATAGGGTTAGGGTG
GGCGAGGTAGAGGGGGATGTGGGCAAGAGAAAGAGAGGTGAAAAAAAGAG
CCGATATTGATCCTGTCTCCATGCAGGTGTTGCGTTAGGGTTAGGGTTAG
ATCATGTACACTCGAGTTAGCTCTTATCTGCATTGTGTGATGATGACTGA
ATGTGTGGGGTGGTATTTATTTACTGCGGCATGGAGTTTGTATAGAGGGA
GTGAAGGAGTGCTTTCGTGGGCCACAATGTTACGTTGAGTGTTGCTTTCA
AAGGGTAGAGTGCTCAGGATTCCTATGACTATTCTACAAGGTTGCCTTGT
TTGTGATGCAGGGTGTTTGCACACCAGATAGGCATGTCACAAGTGCGTGT
TGATCATCTATGTTCCCCACCTGGACATTGATTGTGCAATTTCAAGGATG
CGAAGTTTGGTTCTATTCTTCTCTTTTTTTTCTTTTTTCCATTGTTATTT
GGTGCATCCCAATTTTCTCTTCCCTAACTAACCCTTGATGATCTTCCTCG
TTGTAGCAGTGCGAGTTGCTATGAAAGACCTTTGCTGCGACGCTGACTTG
CATAATAGTGCAATAATCCACAGTACCTTATTATTGTTCTTTTTTTTCAC
CCAAGG
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Coding sequence (CDS) from alignment at C-tenellus_contig6795:104..3109+

>mRNA_C-tenellus_contig6795.1.1 ID=mRNA_C-tenellus_contig6795.1.1|Name=mRNA_C-tenellus_contig6795.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=312bp|location=Sequence derived from alignment at C-tenellus_contig6795:104..3109+ (Choristocarpus tenellus KU2346)
ATGGGTAAGTGTCGGGTTAACGAAGCTTACAATTACATCTGGATGGGAAA
GTATCGCACTGCCAAGAAGATGATCGCTGAACAGGTTGGAGTTGCACGGG
ATGGCAAGGATGAGGAGCTAGAGAATTACGCCTTGATTGCACTGCTGTTC
CTCAAGAGGGCAAGGGCAGTTAATCGAAGGCTGAGGCTCAATTCCTCGGG
AAAAAGAGGCTGCAGGTTGGGTGTGAGGAGTGATGTTGGTGTTGAGGTTA
GGGGGGAGGTGGTGAACCCTACAGTGGATAATCTCCACCGTGTGCGAGCC
CTTCGAATATGA
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