mRNA_C-tenellus_contig6780.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6780.1.1
Unique NamemRNA_C-tenellus_contig6780.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6780.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6780contigC-tenellus_contig6780:59..2043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size816
Hectar predicted targeting categoryother localisation
Exons4
Cds size474
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789991.75471-UTR-C-tenellus_contig6780:58..2211680789991.75471-UTR-C-tenellus_contig6780:58..221Choristocarpus tenellus KU2346UTRC-tenellus_contig6780 59..221 +
1680789991.7664845-UTR-C-tenellus_contig6780:873..10521680789991.7664845-UTR-C-tenellus_contig6780:873..1052Choristocarpus tenellus KU2346UTRC-tenellus_contig6780 874..1052 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789991.7776332-CDS-C-tenellus_contig6780:1052..11021680789991.7776332-CDS-C-tenellus_contig6780:1052..1102Choristocarpus tenellus KU2346CDSC-tenellus_contig6780 1053..1102 +
1680789991.7884684-CDS-C-tenellus_contig6780:1237..14321680789991.7884684-CDS-C-tenellus_contig6780:1237..1432Choristocarpus tenellus KU2346CDSC-tenellus_contig6780 1238..1432 +
1680789991.7997026-CDS-C-tenellus_contig6780:1814..20431680789991.7997026-CDS-C-tenellus_contig6780:1814..2043Choristocarpus tenellus KU2346CDSC-tenellus_contig6780 1815..2043 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6780.1.1prot_C-tenellus_contig6780.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6780 1053..2043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6780.1.1

>prot_C-tenellus_contig6780.1.1 ID=prot_C-tenellus_contig6780.1.1|Name=mRNA_C-tenellus_contig6780.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=158bp
MPQQGGGRARERLPPHRERERETSEQRNRPGMSVCTPSPHPSRPIKKRIH
GGDTRGTVEIILSPPSSPPEKDVRHDGEEAMRRWRASEMSTLNFSQLMGH
YNEVQMRARGFVKESTGGTKFFHEIKSECRGLVVDNSASAMGDGDVCLAN
MLKSTRT*
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mRNA from alignment at C-tenellus_contig6780:59..2043+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6780.1.1 ID=mRNA_C-tenellus_contig6780.1.1|Name=mRNA_C-tenellus_contig6780.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1985bp|location=Sequence derived from alignment at C-tenellus_contig6780:59..2043+ (Choristocarpus tenellus KU2346)
GACGAAACTACATCACAAGGACTACTGTAAATACAACCAATCGTTGTCGA
CAATGCTAAGACACCTCCCTAAAATATGTACTATTTGCAAACTAGCAACA
CAAGAATGTCCCCTTGAATACTGTTTTATGCTAAGTAACGTGTACTCTGA
CCTGGTTGAAACCTAGCTCAGAACTACAAAGTAACGTGGGCCAGGACCTA
GAAAAGCTTCCCAGGACTCTGCCAGGCCCCTTCTTGCCCACCTGCTGCCA
AGTGTGTCTAGGTCTAGCTTGAAACGCACGACGAGTTTTGAGGGAGTCAC
CTGTGCAGTGACGGACATGATCTTTTCCATTATCGGTCAATTCCAACTCA
ACAAATAGTCTGTGGGTGGAGCGAAATGACGTCATGATATTTTGAACCGG
GACGGTACCAGTATTCCAACATACGAGTCGTGTCGTACCGTCCACTAAAC
CGCCGAAACTAAGTCCTTAGCTCCTCACCCTGGGTTGCAGGAATAGGTTT
GAGAAGTAGGAAGTCAGTAGTACATGATAGATATGTAGTACTAAAATAGG
AAGTACATCAAGGTTTTTCTCTTTTGTGACAACTGTTACTTCTTTAAGGA
ATTCTTTCAGACATGTGAATAGTTTTCATTAGTTTTTCTATTGGTACATC
ACTAAAATGTCAGAGGGCATAATAATAAAAAAACTAATTCAATTTGTCCA
ATTGGAACACGACATGGCATCAAAGGTGACAACTGTACCACCAATAGAAT
TCAACATCCCTATCATAAGGTTGCATGTAGTTCCCTTCCAGTCAGCGAAA
CCGTCCCATACACATACAAATTATTAGAGCAAAAATGATAAACGTGTTTA
CAAAATGTCTGTAAAACCGAGTGGCGGCTCACTATCCAGGTAGAAACACT
TGGCCTCTTCGGATTAAGCTACACAGTACTTATTGTAGCTCCAGAGGTCC
GCGAGCTCGTCAGGATTGATTGTCGTCGAACTAAACTGGTAGCGATGCCT
CAACAAGGCGGTGGCCGTGCCAGAGAAAGACTACCTCCCCACAGGTGCCG
TACTCTGGCTAATACAGGATGCCCAACAAAGACAATGCCGTTGGTATAGC
AATGCCCATTTGATAGTACATACTCTCCTACTAAGATATCGCCTCATGAT
CTGTTTTTACACCAAAACCTCCCTGTCAGGGAAAGGGAAAGAGAGACTTC
CGAGCAACGCAATCGCCCAGGCATGTCTGTATGTACGCCCTCACCTCACC
CGTCCCGCCCGATTAAAAAGAGGATCCACGGTGGGGACACGAGAGGGACT
GTTGAGATAATACTGTCGCCTCCCTCTAGCCCCCCTGAGAAGGATGTACG
TCATGACGGCGAAGAGGCCATGAGGTGAGGTCGCCAGAGTCATCCTATCT
TAGAGGAGGGTGTCGTCAAATGTTTATCGCCTACCATGACTGTTCTGTGG
TACACATGCTTCTAGTATGTCTTCATCTGAATAGTAGAGGCACACGATCC
CATGCCTATACCAGCGTACCAGATCATTTCCTGTAACTAAGCCATCGGGT
AGGATCGTAAGTTCCACCCTGTCTTACATTCCACGTTGGTCAGCCTAGGA
CTTGACCGCTGCCATGCCAACCAGTTATATTATCCCTCTCACACCATCGA
CATCATTTGAGGTAACCGCCACACACCGAGCATAAGCGTGCTGCCTCTAA
TCCCATGTCTCCAAATAATGAATGGGTTCTTCTCTGTCATTCTCACAAAC
TGCCAGGCGATGGAGGGCTTCAGAAATGTCCACCTTGAACTTCAGTCAGC
TCATGGGCCACTACAATGAGGTACAGATGCGTGCTCGGGGGTTTGTCAAG
GAATCCACAGGAGGTACAAAGTTTTTCCACGAAATCAAGAGCGAATGCCG
CGGTCTTGTGGTGGACAATTCGGCTTCTGCCATGGGAGATGGGGACGTCT
GCCTAGCTAACATGCTCAAGAGCACCAGAACGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig6780:59..2043+

>mRNA_C-tenellus_contig6780.1.1 ID=mRNA_C-tenellus_contig6780.1.1|Name=mRNA_C-tenellus_contig6780.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=474bp|location=Sequence derived from alignment at C-tenellus_contig6780:59..2043+ (Choristocarpus tenellus KU2346)
ATGCCTCAACAAGGCGGTGGCCGTGCCAGAGAAAGACTACCTCCCCACAG
GGAAAGGGAAAGAGAGACTTCCGAGCAACGCAATCGCCCAGGCATGTCTG
TATGTACGCCCTCACCTCACCCGTCCCGCCCGATTAAAAAGAGGATCCAC
GGTGGGGACACGAGAGGGACTGTTGAGATAATACTGTCGCCTCCCTCTAG
CCCCCCTGAGAAGGATGTACGTCATGACGGCGAAGAGGCCATGAGGCGAT
GGAGGGCTTCAGAAATGTCCACCTTGAACTTCAGTCAGCTCATGGGCCAC
TACAATGAGGTACAGATGCGTGCTCGGGGGTTTGTCAAGGAATCCACAGG
AGGTACAAAGTTTTTCCACGAAATCAAGAGCGAATGCCGCGGTCTTGTGG
TGGACAATTCGGCTTCTGCCATGGGAGATGGGGACGTCTGCCTAGCTAAC
ATGCTCAAGAGCACCAGAACGTGA
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