mRNA_C-tenellus_contig6747.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6747.2.1
Unique NamemRNA_C-tenellus_contig6747.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig6747.2.1 vs. uniprot
Match: D7G0M7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M7_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 8.620e-67
Identity = 116/217 (53.46%), Postives = 145/217 (66.82%), Query Frame = 1 
Query:   10 VNKNASDEVFSGGYRPPTNDPQFSTVIRQDYTLSKSVCSEDYTKRVPPEGFDRLRANRTNYSLGNQMVAPGGLKSATAELQMSNPQNRPSVQQPQIGGWTRRNSKGETYYQDIESVESVRRGGGGGEGILGVQFNIVTGECEPKARKRALLQAGPRRTLNNKEKEDLHPTDSWGDT-SGHYIDIVTGKKRISPAAPPQPTSVSLRRPEETSRRTRPW 657
            VNKNASDEVF G Y PP +DP+FSTV R +  L+KSV +  Y  R P EGFDRL ANRTNYSLG        LK+ATAELQM +P+++P V QP +GG T R+    +Y  D  + +SVRRGGGGGEG+LGV+F+++ G  +  AR +  ++ GPRRTLNN EKE LHPTD WGD   G Y+DI+TGK R     P +     +R  +  S RTRPW
Sbjct:    2 VNKNASDEVFDGSYSPPPSDPRFSTVTRME--LTKSVHTPGYAIRRPKEGFDRLNANRTNYSLGQHPTTE--LKTATAELQMKHPRDQPRVDQPAVGGSTLRDG---SYRLDTSARDSVRRGGGGGEGVLGVRFDVINGREDEGARGKVAMRTGPRRTLNNAEKEVLHPTDGWGDVPGGMYVDILTGKDRRKFDVPERGAGAPVRS-DTVSGRTRPW 210
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BLAST of mRNA_C-tenellus_contig6747.2.1 vs. uniprot
Match: A0A7S2S3K8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S3K8_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.320e-36
Identity = 92/222 (41.44%), Postives = 126/222 (56.76%), Query Frame = 1 
Query:    1 MCKVNKNASD-EVFSGGYRPPTNDPQ--FSTVIRQDYTLSKSVCSEDYTKRVPPEGFDRLRANRTNYSLGNQMVAPGGLKSATAELQMSNPQNRPSVQQPQIGGWTRRNSKGETYYQDIESVESVRRGGGGGEGILGVQFNIVTGECEPKARKRALLQAGPRRTLNNKEKEDLHPTDSWGDTSGHYIDIVTGKKRISPAAPPQPTSVSLRRPEETSRRTRPW 657
            M +++KNASD +   G    P +DP+  F T    DY    S  SE Y +  P   FDRL A++TNY + + +      K+ T+ +  ++P+ RP  +Q  IGGW  R S GE Y  +  + E+V+RGGGGGEG LGV+FNIVT E  P+AR+ ALLQ GPR ++N KE      ++ +GD S    +I+TGK+     AP       L RP E   RTRPW
Sbjct:   62 MPRIHKNASDKDSIQGAEGGPYHDPRKVFKTTFASDYHSGASALSEKYVRERP--AFDRLSASKTNYEITSPLETIPPFKT-TSHVLHAHPKTRPQPEQAAIGGW--RTSTGE-YCTNELAKETVKRGGGGGEGSLGVRFNIVTNEGAPRARETALLQTGPRVSMNKKEPW-RQGSNRFGD-SDMQTNIITGKQHAHFQAPKPLGPADLLRPNEAIARTRPW 275
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BLAST of mRNA_C-tenellus_contig6747.2.1 vs. uniprot
Match: A0A7S2F937_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2F937_9STRA)

HSP 1 Score: 119 bits (297), Expect = 4.550e-29
Identity = 83/220 (37.73%), Postives = 117/220 (53.18%), Query Frame = 1 
Query:    7 KVNKNASDEVF--SGGYRPPTNDPQFSTVIRQDYTLSKSVCSEDYTKRVPPEGFDRLRANRTNYSLGNQMVAPGGLKSATAELQMSNPQNRPS-VQQPQIGGWTRRNSKGETYYQDIESVESVRRGGGGGEGILGVQFNIVTGECEPKARKRALLQAGPRRTLNNKEKEDLHPTDSWGDTSGHYIDIVTGKKRISPAAPPQPTSVSLRRPEETSRRTRPW 657
            +++KNASD+V    GG   P    Q+    + ++    +  S  Y K  P   +DR+ + +TNYSLG +   PG   S T      +P   P+ VQQ  IGGW R +    +Y+ + ES +S+ RGGGGGEG LGVQFNIV    +P AR R  ++ G R ++N +E       D++GD        + GK R  P APP  T+ +L RP+    RTRPW
Sbjct:   67 RMDKNASDKVAIQGGGVVQPR---QYENSYKAEFHPGTTALSSAYVKEGP--AYDRISSCKTNYSLG-EYRPPGPAISTTHS---HHPYKMPTDVQQANIGGWKRSDG---SYHCEHESNDSIVRGGGGGEGSLGVQFNIVNNASDPGARDRVAMRTGARVSVNKREPWSAG-CDAYGDPGPDGPVNIFGKARQRPQAPPHQTAQALLRPDHDVLRTRPW 273
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BLAST of mRNA_C-tenellus_contig6747.2.1 vs. uniprot
Match: A0A8J2T189_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T189_9STRA)

HSP 1 Score: 110 bits (274), Expect = 5.730e-26
Identity = 77/220 (35.00%), Postives = 116/220 (52.73%), Query Frame = 1 
Query:    7 KVNKNASDE---VFSGGYRPPTNDPQFSTVIRQDYTLSKSVCSEDYTKRVPPEGFDRLRANRTNYSLGNQMVAPGGLKSATAELQMSNPQNRPSVQQPQIGGWTRRNSKGETYYQDIESVESVRRGGGGGEGILGVQFNIVTGECEPKARKRALLQAGPRRTLNNKEKEDLHPTDSWGDTSGHYIDIVTGKKRISPAAPPQPTSVSLRRPEETSRRTRPW 657
            +V+KNASD+   + S G+      P F++    ++    +  S  Y KR P   FDR  +  TNYSLG    AP   K+ T ++  ++P  +P V Q +IGGW   +    +Y  + E+++S++RGGGGG G LG+ FN++TGE  P  R+      G RRTLN  +  + HP DS+   +          + +   APP  T+  L+R E+   RTRPW
Sbjct:   48 RVDKNASDKEAVIDSTGF-----PPCFTSTNTAEFNRDTTTFSRRYVKREPC--FDRQSSCATNYSLGE---APFETKT-TNDVLFAHPLTKPRVDQGEIGGWKHPDG---SYKLEQEAIDSIKRGGGGGAGCLGISFNVITGEEIPGIREGKRAIYGARRTLNVTQYRE-HPGDSYNPVT---------MRDVPATAPPHQTTEMLKRSEDVHLRTRPW 243
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BLAST of mRNA_C-tenellus_contig6747.2.1 vs. uniprot
Match: A0A7S2XV44_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV44_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.940e-11
Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 1 
Query:  334 YYQDIESVESVRRGGGGGEGILGVQFNIVTGECEPKARKRALLQAGPRRTLNNKEKEDLHPTDSWGDTSGHYIDIVTGKKRISPAAPPQPTSVSLRRPEETSRRTRPW 657
            Y+ DIE+ ++V RGG    G+LG+ FNIVTG+     R+  + + G R + N +EK     T     T+G  +DI+TGK R    AP   T + L+R +    RTRPW
Sbjct:   11 YFTDIETNKTVMRGGXXXXGVLGLNFNIVTGQ-PTNTRQENMNRFGARISNNMREKTWATSTSQ---TNGGRVDIITGKVRAQHLAPQSQTPMLLQREDVPVMRTRPW 114
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6747.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G0M7_ECTSI8.620e-6753.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2S3K8_9STRA1.320e-3641.44Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2F937_9STRA4.550e-2937.73Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8J2T189_9STRA5.730e-2635.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2XV44_9STRA1.940e-1138.89Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6747contigC-tenellus_contig6747:4029..5501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size660
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_001520.1
Cds size660
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789989.2898686-CDS-C-tenellus_contig6747:4028..40811680789989.2898686-CDS-C-tenellus_contig6747:4028..4081Choristocarpus tenellus KU2346CDSC-tenellus_contig6747 4029..4081 +
1680789989.3041685-CDS-C-tenellus_contig6747:4894..55011680789989.3041685-CDS-C-tenellus_contig6747:4894..5501Choristocarpus tenellus KU2346CDSC-tenellus_contig6747 4895..5501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6747.2.1prot_C-tenellus_contig6747.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6747 4029..5501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6747.2.1

>prot_C-tenellus_contig6747.2.1 ID=prot_C-tenellus_contig6747.2.1|Name=mRNA_C-tenellus_contig6747.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=220bp
MCKVNKNASDEVFSGGYRPPTNDPQFSTVIRQDYTLSKSVCSEDYTKRVP
PEGFDRLRANRTNYSLGNQMVAPGGLKSATAELQMSNPQNRPSVQQPQIG
GWTRRNSKGETYYQDIESVESVRRGGGGGEGILGVQFNIVTGECEPKARK
RALLQAGPRRTLNNKEKEDLHPTDSWGDTSGHYIDIVTGKKRISPAAPPQ
PTSVSLRRPEETSRRTRPW*
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mRNA from alignment at C-tenellus_contig6747:4029..5501+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6747.2.1 ID=mRNA_C-tenellus_contig6747.2.1|Name=mRNA_C-tenellus_contig6747.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1473bp|location=Sequence derived from alignment at C-tenellus_contig6747:4029..5501+ (Choristocarpus tenellus KU2346)
ATGTGCAAAGTAAACAAGAATGCGTCGGATGAGGTGTTCAGCGGAGGTTA
CAGGTGAGAAGTGGCGACACTTCTTAACGCAGGAGATCTAGTCAGTACGG
ATCTTTGGCAGTCAGCAGATTCCCCAGATGAACCATAGCAACACCTACGA
ATTTGCGAGGGGGTGGACCTGCTCTGTAGGAGAGGGACGATCAAGTAATC
AAATACAAGAGCTCTAGTCTGTATTATCTCGACATGCTATACTGACCTAA
AGTATCTGGGGGGGGCGGGGGCGGGGGCGGGCTACACTAGGGTATCAATT
TGGCCCATAACCAGGAAAAGTGCACTTTCATTATCCATTCGACGTATGGA
ATCAAATCACCGAAAAATCGCTACATGAAAAAATTGGCCCCAAGTGGACA
GTCGCAACCCCCCCCCCCCCCAGATACTTCGAGTCACTCTATGTCTGTTG
CTGACGGTCACTACAGTCAAACTAGTAGATCTGGGGGGTTAGGGGGTTCA
CGCACCCCTAGATCAAATAATAGATAAGAAGTCAAATGCCATATATATAA
AACATCTTCTCATTTGTAAAGCAACAATCAGGGAAATTATGTGGTCCAAC
CTGTAGATTACGAACACCGTCGACTTCGTAAGTCGGATCACCCCACGCTA
TCCTATACTATGCTCCTCCGCGTTCTGAGCTCTGTCAAGTCTATACATAT
ATGCGTACCTCATCTCCACCTACCCACATCAGGAACACATCCGAACTTCA
AAGACATGTATATAGAGAGAGCAACAAGTGTGGCAGTCAAAGAAATTGAT
ATGCTACCTGAGCAATTATTAACTGCTACAATATGTTGATGTGATAATTA
TCTTGATAACCCACAGGCCGCCAACAAATGACCCTCAATTCAGCACAGTT
ATCCGACAAGACTATACACTCTCCAAGTCGGTCTGTAGTGAAGACTACAC
AAAGAGAGTTCCCCCTGAGGGATTCGACCGGCTGAGAGCCAATCGTACAA
ACTACAGCCTCGGGAATCAGATGGTGGCTCCAGGAGGACTAAAATCTGCA
ACTGCCGAACTCCAAATGTCCAACCCTCAGAACCGACCATCAGTACAGCA
ACCTCAGATTGGCGGCTGGACTCGGAGGAACTCGAAAGGAGAGACATACT
ACCAAGACATCGAGAGTGTTGAAAGCGTGCGAAGAGGGGGTGGAGGTGGC
GAGGGTATACTTGGGGTTCAGTTTAACATTGTCACCGGGGAATGCGAACC
AAAGGCTCGTAAGAGGGCACTGTTACAGGCAGGGCCTCGTCGGACACTAA
ACAACAAGGAAAAGGAGGACTTGCACCCAACAGACTCATGGGGGGACACA
TCTGGGCACTACATAGATATTGTGACTGGAAAGAAAAGGATCAGCCCTGC
CGCTCCCCCTCAACCCACATCTGTCTCATTAAGAAGACCTGAGGAGACAT
CCAGGAGGACTCGACCATGGTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig6747:4029..5501+

>mRNA_C-tenellus_contig6747.2.1 ID=mRNA_C-tenellus_contig6747.2.1|Name=mRNA_C-tenellus_contig6747.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=660bp|location=Sequence derived from alignment at C-tenellus_contig6747:4029..5501+ (Choristocarpus tenellus KU2346)
ATGTGCAAAGTAAACAAGAATGCGTCGGATGAGGTGTTCAGCGGAGGTTA
CAGGCCGCCAACAAATGACCCTCAATTCAGCACAGTTATCCGACAAGACT
ATACACTCTCCAAGTCGGTCTGTAGTGAAGACTACACAAAGAGAGTTCCC
CCTGAGGGATTCGACCGGCTGAGAGCCAATCGTACAAACTACAGCCTCGG
GAATCAGATGGTGGCTCCAGGAGGACTAAAATCTGCAACTGCCGAACTCC
AAATGTCCAACCCTCAGAACCGACCATCAGTACAGCAACCTCAGATTGGC
GGCTGGACTCGGAGGAACTCGAAAGGAGAGACATACTACCAAGACATCGA
GAGTGTTGAAAGCGTGCGAAGAGGGGGTGGAGGTGGCGAGGGTATACTTG
GGGTTCAGTTTAACATTGTCACCGGGGAATGCGAACCAAAGGCTCGTAAG
AGGGCACTGTTACAGGCAGGGCCTCGTCGGACACTAAACAACAAGGAAAA
GGAGGACTTGCACCCAACAGACTCATGGGGGGACACATCTGGGCACTACA
TAGATATTGTGACTGGAAAGAAAAGGATCAGCCCTGCCGCTCCCCCTCAA
CCCACATCTGTCTCATTAAGAAGACCTGAGGAGACATCCAGGAGGACTCG
ACCATGGTAG
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