mRNA_C-tenellus_contig6711.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6711.1.2
Unique NamemRNA_C-tenellus_contig6711.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig6711.1.2 vs. uniprot
Match: A0A6H5JF13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF13_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 3.430e-14
Identity = 61/174 (35.06%), Postives = 84/174 (48.28%), Query Frame = 1 
Query:  157 ATDYHCTTVGLTEGGQQVMLCLVVKVAY----------------RSAHAGVQTPEK----------------VLRPSMLGFVLVLDHRSGVIRVLSTQTCRSTGGKSCAALCIPLAQYLKRSGGVVVSTCVPKSGPRVPQPMLTKPGRQLSNAAVLRGKSEMAILNPVYPVAIV 582
            ATDYHC T GL +GG+ V+L LVVKV Y                R    G +T                   V  P ++ ++L LD  SG + VL +   RS G + CA++C  +A+ L+             + P +    + +PGR+LSN AV +G+S  AI NPVYPVAIV
Sbjct:  580 ATDYHCVTAGLRDGGRGVLLSLVVKVMYTGPRRKRKRGGGRGDGREERGGAKTXXXXXTGTRNGSGGDAGAAVEGPFLVSYILDLDLESGEVAVLGSG--RSEGRRRCASMCEKMARCLRYHD----------AAPVIDDFHVDRPGRRLSNTAVFQGRSVGAITNPVYPVAIV 741
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BLAST of mRNA_C-tenellus_contig6711.1.2 vs. uniprot
Match: D8LIF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIF3_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 8.880e-5
Identity = 47/150 (31.33%), Postives = 64/150 (42.67%), Query Frame = 1 
Query:  133 SRRSSAAIATDYHCTTVGLTEGGQQVMLCLVVKVAYRSAHAGVQTPEKVLRPSMLGFVLVLDHRSGVIRVLSTQTCRSTGGKSCAALCIPLAQYLKRSGGVVVSTCVPKSGPRVPQPMLTKPGRQLSNAAVLRGKSEMAILNPVYPVAIV 582
            S R+ +  ATDYHC T GL +GG+ V+L LVVKV Y  +                         +      +T T   +GG + AA+           G  ++S  +                 +LSN AV +G+S  AI NPVYPVAIV
Sbjct:  521 SARAPSVHATDYHCVTAGLRDGGRGVLLSLVVKVMYTGSRRXXXXXXXXXXXXXXXX-----XXAKTXXXXATGTRNGSGGDASAAV----------EGPFLLSYILDLD-------------LELSNTAVFQGRSVGAITNPVYPVAIV 642
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6711.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JF13_9PHAE3.430e-1435.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIF3_ECTSI8.880e-531.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6711contigC-tenellus_contig6711:1679..4425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1323
Hectar predicted targeting categoryother localisation
Exons3
Cds size546
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789987.0658467-UTR-C-tenellus_contig6711:1678..17261680789987.0658467-UTR-C-tenellus_contig6711:1678..1726Choristocarpus tenellus KU2346UTRC-tenellus_contig6711 1679..1726 +
1680789987.1136792-UTR-C-tenellus_contig6711:3696..44251680789987.1136792-UTR-C-tenellus_contig6711:3696..4425Choristocarpus tenellus KU2346UTRC-tenellus_contig6711 3697..4425 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789987.0778818-CDS-C-tenellus_contig6711:1726..18851680789987.0778818-CDS-C-tenellus_contig6711:1726..1885Choristocarpus tenellus KU2346CDSC-tenellus_contig6711 1727..1885 +
1680789987.087702-CDS-C-tenellus_contig6711:2792..29081680789987.087702-CDS-C-tenellus_contig6711:2792..2908Choristocarpus tenellus KU2346CDSC-tenellus_contig6711 2793..2908 +
1680789987.0989065-CDS-C-tenellus_contig6711:3425..36961680789987.0989065-CDS-C-tenellus_contig6711:3425..3696Choristocarpus tenellus KU2346CDSC-tenellus_contig6711 3426..3696 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6711.1.2prot_C-tenellus_contig6711.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6711 1727..3696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6711.1.2

>prot_C-tenellus_contig6711.1.2 ID=prot_C-tenellus_contig6711.1.2|Name=mRNA_C-tenellus_contig6711.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=182bp
MSTSDLTSAVDCGSTSSPPFASVSTGCGSRRSSAAIATDYHCTTVGLTEG
GQQVMLCLVVKVAYRSAHAGVQTPEKVLRPSMLGFVLVLDHRSGVIRVLS
TQTCRSTGGKSCAALCIPLAQYLKRSGGVVVSTCVPKSGPRVPQPMLTKP
GRQLSNAAVLRGKSEMAILNPVYPVAIVKGA*
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mRNA from alignment at C-tenellus_contig6711:1679..4425+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6711.1.2 ID=mRNA_C-tenellus_contig6711.1.2|Name=mRNA_C-tenellus_contig6711.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2747bp|location=Sequence derived from alignment at C-tenellus_contig6711:1679..4425+ (Choristocarpus tenellus KU2346)
AAAGGGGTAAAGAAGGGAGATTCAGACAAATGCAATGGTTCAGGTTCTAT
GTCTACCTCTGACTTGACTTCAGCTGTGGATTGTGGCTCTACATCTTCAC
CTCCCTTTGCCTCTGTGAGTACGGGTTGTGGGTCGAGAAGATCATCGGCG
GCCATTGCCACTGACTACCATTGCACCACCGTGGGGCTGACAGAAGGGGG
CCAACAGGTGAGAGTTGTGGGATAGACCGCAATTGGGACTGGATCTAGAA
CTGGAACTGCAACTGGTACTATCCCTTGAATCAGACCCACAAGTTGGGTC
AGGCTTGGGGCAGGAAAAGGTGTCTGGGAGGGAGGGGTACACGGGCTTTT
GGCTCCAAGGATGCAGATGTCCTTGGTGTCATGCTTTGAGGAGAGTTGCA
AATACTTCGGTGCAACACTTGAATGATGTTCTGTCCCCTAGCTGGGGGCA
GTATATTTCGAACTTCAGTTACCAAATTTCTTGGAAAGTTTGTGCTTTGA
TGCTGTTTTTGTCTCTGTGAGTATACTGTTTGACAATCTCCATGTGTGCA
TGGTGCCCTTGCCGAATGACTTGAGAAGTTTGAGAGTTAGTAATATTATT
CCTTTCCTCACTAGTAAGACCCCAGGGCGGGTAGGCCCAAAGTAGTAAGG
AGGGCTGGGACTGACACCGCTTCTGTAGTCGAGATGATGGGCAGTTGTGA
CCGACCTTTTGCCAGCGTAGTCGTTGCTTAGATACACAAGAGGTCTGGTA
ATTCTTCATTCCCAATCATACATACCCCATGCTGAACTGGAGGACTCTTG
AAGAGGAAACCGCATCTGTGGTGAAGAGGTCAAAGTTTGACTTAGATTGA
TCGTCGCCGAATGAGAAGCACTCGGCGGAGCATAATGTCAACATATTCCA
GTGTGTATCTATAGGTACATAATCGGGAGTACATGCAAGACTTGGATGAT
TTGTTTCCTGTTTGTATTGTAGCAAGAACCAGAAGTAAATGGGATTCGGT
ACAAACCTATATTTACACTTGCAAAAAACAAATCATACTTCGTTAACGTC
TGTCCAAGTCCTACGTATGGTTGATGTCTTATGCAGAATATGACCCTGGC
CATCCTGTTCTCAGGTGATGCTTTGCCTGGTTGTAAAGGTTGCGTACAGA
TCTGCTCATGCTGGGGTTCAAACTCCGGAGAAGGTTCTGCGCCCTTCAAT
GTTAGGGTTTGTCCTGGTGCTTGACCACAGGTGAGTAGGTAGACATATGC
AGTGGTTCTTCCCTTTTCTTTCAACACCTTTTTGGTCTGTCCCCCTCCCC
CTCCCCCTCCTTCTCCCAGTCTTTCTTGAAGCTGGATAGAATTGTGTGGG
CTACTTGGGATCCTGTGCACAGGGCTATTTCCATTAAAGTTTCCTTGTCT
GATTGTTAGCGAACTAAGCTTAATGAATCTGATTCACTCTCCTTGTGCTG
TATCCTGCCAGAGCAAATGTTCTCCGGGGCAAGAGTTCAATAGGTGAACA
CTGTAAACAGCATGAGGTATGAATGCTGTTTGTTGATAGCAAAATTTTCT
CCATGTATTTATAAGAAGGGAGAGGACACGCGAGGGTGGAGTACCACTTG
ATACGCCTGGAGGCAAGAAAGAGGGACTCATATCCGCCTTATTCCTGCTC
CCCTTACTTTGTTTCGTCAACTTCAATTTATTCATCATGTGAGCCCCCTT
CTGGAGTGCTCTCACACCCCACTCCCTGTGATTGATGACCTCCGCAGGAG
TGGAGTCATCAGGGTGCTCAGCACGCAGACGTGCCGTAGCACCGGAGGAA
AGAGCTGTGCGGCCCTCTGCATCCCACTTGCTCAATATTTAAAGAGAAGT
GGTGGTGTTGTTGTCTCCACTTGTGTCCCCAAATCAGGACCTAGGGTCCC
CCAACCAATGCTCACCAAACCTGGTCGGCAGCTGAGTAATGCAGCGGTGT
TACGAGGGAAGTCTGAAATGGCCATTCTTAATCCTGTTTATCCAGTTGCA
ATCGTAAAGGGAGCTTAATTTGAGTGAAGACCTGTTACCGTATGTGTTGG
TTTTTGTTGTTTCTAGTGTTTGCATGGACTTTCTATGCCCATCGAGTTAC
TCTCATGACCGTAGAAGTCCTGGACGCAAGCGTATTCCTCTATCCTCCAC
ATCTCCCATCCTGTGCATGCCTGCCCCATAACCCAATACCAAATACCCCA
TTATCCTTCACCCATGTTTTGTTTTTGTGATCAGATCTGATGTTGTGTAT
CATGTTGAGATATATACTCCGCAGTACAAGAAATATATATTATGTATCCC
ATCGACACCAGGATTTCCACTGATACATCTTCACCCTGTCAATGTGTTGC
CATTGCAGAGTGCGATCCTTGCCTGAGTGATCTAGTTAACAGGTTTGTAA
CGTTGGACTTAATAAGACAATTCAAGAGGTTTTGTGGTGAACGCAACCAG
GTCTTGTATCTTACACGATCTGATATCTATACTATCACCTATCTTCCATG
AAGTCAACAGGCACTGAGAGGGTTGTTTGTTCCCAAGTATCTTTGAAGAG
GTAGATGATAGCATATACTTCACTTTGACTATTAACATAACTCTAATATA
GTTGTAGAGGATAATCAACGATCATCACCACAACATTCATGGGACTCTGC
CAGAATCTTGCTGTAGTGAACCTCAGCTTAGAAATTAAGTAGCCTACAAC
AAAATTCACCTGACAGCATACTCTGGAATACCAAGTAACAGGATTTT
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Coding sequence (CDS) from alignment at C-tenellus_contig6711:1679..4425+

>mRNA_C-tenellus_contig6711.1.2 ID=mRNA_C-tenellus_contig6711.1.2|Name=mRNA_C-tenellus_contig6711.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=546bp|location=Sequence derived from alignment at C-tenellus_contig6711:1679..4425+ (Choristocarpus tenellus KU2346)
ATGTCTACCTCTGACTTGACTTCAGCTGTGGATTGTGGCTCTACATCTTC
ACCTCCCTTTGCCTCTGTGAGTACGGGTTGTGGGTCGAGAAGATCATCGG
CGGCCATTGCCACTGACTACCATTGCACCACCGTGGGGCTGACAGAAGGG
GGCCAACAGGTGATGCTTTGCCTGGTTGTAAAGGTTGCGTACAGATCTGC
TCATGCTGGGGTTCAAACTCCGGAGAAGGTTCTGCGCCCTTCAATGTTAG
GGTTTGTCCTGGTGCTTGACCACAGGAGTGGAGTCATCAGGGTGCTCAGC
ACGCAGACGTGCCGTAGCACCGGAGGAAAGAGCTGTGCGGCCCTCTGCAT
CCCACTTGCTCAATATTTAAAGAGAAGTGGTGGTGTTGTTGTCTCCACTT
GTGTCCCCAAATCAGGACCTAGGGTCCCCCAACCAATGCTCACCAAACCT
GGTCGGCAGCTGAGTAATGCAGCGGTGTTACGAGGGAAGTCTGAAATGGC
CATTCTTAATCCTGTTTATCCAGTTGCAATCGTAAAGGGAGCTTAA
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