mRNA_C-tenellus_contig6693.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6693.2.1
Unique NamemRNA_C-tenellus_contig6693.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig6693.2.1 vs. uniprot
Match: A0A835YNI0_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNI0_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 6.240e-10
Identity = 42/93 (45.16%), Postives = 52/93 (55.91%), Query Frame = 2 
Query:   80 KGGHYATVRELLIAGANVDVMFDSENNAVTPLMFATQYTGLMKLQGQPWAYFGAVVRVLLDGGASVHLTDKKGRTALMFAAELGHVEVTGWLI 358
            +GG +  VR L +AGA  DVM   ++   TP++FA      M + G           VLLDGGA V   DK GRTALMFAAELGH E+  W +
Sbjct:   47 QGGFHEAVRWLCMAGAKKDVM--DKHVGATPMLFACIEGASMVVNGG----------VLLDGGADVSARDKSGRTALMFAAELGHPELVQWCL 127
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6693.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YNI0_9STRA6.240e-1045.16Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6693contigC-tenellus_contig6693:751..4489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size909
Hectar predicted targeting categoryother localisation
Exons5
Cds size618
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6693.2.1prot_C-tenellus_contig6693.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6693 903..4069 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789985.2364752-UTR-C-tenellus_contig6693:750..9021680789985.2364752-UTR-C-tenellus_contig6693:750..902Choristocarpus tenellus KU2346UTRC-tenellus_contig6693 751..902 -
1680789985.2953763-UTR-C-tenellus_contig6693:4069..41251680789985.2953763-UTR-C-tenellus_contig6693:4069..4125Choristocarpus tenellus KU2346UTRC-tenellus_contig6693 4070..4125 -
1680789985.3062642-UTR-C-tenellus_contig6693:4406..44891680789985.3062642-UTR-C-tenellus_contig6693:4406..4489Choristocarpus tenellus KU2346UTRC-tenellus_contig6693 4407..4489 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789985.2530687-CDS-C-tenellus_contig6693:902..11211680789985.2530687-CDS-C-tenellus_contig6693:902..1121Choristocarpus tenellus KU2346CDSC-tenellus_contig6693 903..1121 -
1680789985.2647283-CDS-C-tenellus_contig6693:2634..27991680789985.2647283-CDS-C-tenellus_contig6693:2634..2799Choristocarpus tenellus KU2346CDSC-tenellus_contig6693 2635..2799 -
1680789985.2735705-CDS-C-tenellus_contig6693:3291..33891680789985.2735705-CDS-C-tenellus_contig6693:3291..3389Choristocarpus tenellus KU2346CDSC-tenellus_contig6693 3292..3389 -
1680789985.283464-CDS-C-tenellus_contig6693:3933..40691680789985.283464-CDS-C-tenellus_contig6693:3933..4069Choristocarpus tenellus KU2346CDSC-tenellus_contig6693 3934..4069 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6693.2.1

>prot_C-tenellus_contig6693.2.1 ID=prot_C-tenellus_contig6693.2.1|Name=mRNA_C-tenellus_contig6693.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=206bp
MFDSENNAVTPLMFATQYTGLMKLQGQPWAYFGAVVRVLLDGGASVHLTD
KKGRTALMFAAELGHVEVTGWLIASGSDVEAADINGTRPLMYASIGAHMQ
VVMALLEAGADPNTTNSKGSGSLHFAASGGSLPIMNLLLKKDCDVDAANV
DGDNALSLAISAGKVGAVGYLIEKANASLECIDKVCWGRKGYRTCVCLLD
AHNQS*
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mRNA from alignment at C-tenellus_contig6693:751..4489-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6693.2.1 ID=mRNA_C-tenellus_contig6693.2.1|Name=mRNA_C-tenellus_contig6693.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3739bp|location=Sequence derived from alignment at C-tenellus_contig6693:751..4489- (Choristocarpus tenellus KU2346)
TCGAAACTTGGCCGTCTTGAGGATGTGCAAACACTGATTGCGTCCGGGGT
ACGTGTTGATGGACTGAACGAAAGTGGGGAAAGGTGCGAAAAAATCGTTG
GTTAGCAGTTGTACTGCACTGTAGCACGTGGCCTGGTCATCGATAGGATC
ACTTGGACGATGCGGACTTTGGTGGAACTAACCTTGCACTTCCCAGTCCT
CTTGATCCTTCAATCCCACCCTTGTGACTACTGCTATAGCGCCCTGATGC
TGGCGAGTCAAAACGGTCATGCTGAGGTAGCCAAGTGGCTAGCCTTAGCT
GGAGTAAATCTTGAGGTGAAAGATGGAAAAATGGATACAACTGCCCTCAT
GTTCGCTTGCATAGGCGGGCACTATGCAACAGTTCGAGAATTGCTAATTG
CAGGAGCAAATGTGGACGTAATGTTCGACTCTGAAAACAACGCTGTGACA
CCACTGATGTTCGCTACACAGTACACCGGACTGATGAAATTGCAAGGCCA
ACCGTGGGCCTACTTCGGGGCTGTTGTCAGGGTCCTTTTGGACGGGGGTG
CCTCGGGTGAGTAAAGTATTGTCGTTTTAGATCGCCAAGATCGAATCAAT
GTGTACGTACGATTGTTGACCATGGGGTTGATTTCTTTGACCGTGCCATG
TTGTGAGTCTGTTTCGTGGCTGGTGTTAGGATGAAGCGATATAACTGTCA
ACAATAACCCCTTGTCTAATGCGTCGACACAAGAATTGGGCGTGAAGCTG
GGACGTTTGGGTGCAATCATTGTCGTTAAGTTTTTTTCCACAGAACAAAT
CTCGAGGTCTATTTCCTGTAAAACCGATCAATGACCAATCCCTCGGTGCC
CAATTCACTGCATTAATTAGCTAACGGTTGGCCCACCTGCCCAAGAATTA
ACAACTTATTAACAACGTAGCCCGCAATTTGTATCGATCGTGGTGAAACA
GTTTCCCAGCTTAACCACTGGAACACTTTTGTACTAGAGTTACGTCCCAA
TATGCCCAATGATCCTAAACCTTCCAAAGGCGAGCTACTCATGTGGACAG
CACAACCGCCCTCCCTCCCTCCCTCCCTGCACGGCTTTCACGAGTATCAG
TTCACCTCACAGACAAGAAAGGCCGCACAGCGCTCATGTTTGCCGCTGAA
CTTGGTCATGTTGAGGTGACAGGATGGCTCATTGCTTCAGGGTCTGATGT
GAGTCTCACCTTCCTTGGGAATTTCTGACACGCATATAATTTACTGTTCG
ATGCCATGTGATGTGCAATAATAATAGCTCTAAACAGTGTGCAAGATTGT
CATGTGGAAAGCGCAAGTCATGTTTAATATATTCATTTCCAACACCGAGG
ATTGATCCTCCCCTCACAAAGTTCTACAACATGAGCCTGCCTACCCTCTT
TTAATGTTTGTAGTAAGGTGTAATGTGGATAGTGGAGCTTCATGTGTTGG
TGCATATGGAGGTGTCAGGTGTACACCCTATGTCCGGTAACAATGCTTCC
ACTGGATGGGGTATGACATGTCTACATCATTGTAAAGATAGGCTTGCTTA
TATACTGAGGGAAGGGCAGGTGCTGTTGCAAGTATACATATCATTGATTT
TGTCAATTTCGCTTCAGTGAAACAGGTTGGATTCGAAACGCCTTCCTCGC
ATTCCCCTTCGCACCCTTGGATTACCTCGATTAAGTAAAGGTTGAAGCAG
CAGATATCAATGGTACCCGCCCACTGATGTATGCCAGCATTGGGGCACAT
ATGCAAGTTGTGATGGCATTGCTGGAGGCTGGTGCTGACCCCAACACAAC
CAATTCCAAAGGATCTGGCTCACTGCATTTTGCGGCCTCTGGGGGTTCAC
TACCGGTGAGGTCAATAACATACTTTTGATTGTGATCCAAGACTAAGTGA
CTATGAATAGTTGCTGATGAGGGCCTGATACTGGGCTGGGGGGGAGAGAA
AGGAAGATATGGATCGGACTGTGGAAATAGGAGGTCCTTGAAACATCTCC
CACCTATTGTATGAAAAGTTGTGTACTGAAAAGAGGTGTCTTTTGGTGGT
ATTTTTTTTTTGTTCAGTTTTTTTGTTTACTTTTGTTTTGCTGCTGGTTG
CATTGATGACAATATTATGGAACAGGTATGTTTACAACAACAACAAAAAA
TGCTAATGACTCTTCCACTGCATTTTGCATGGAAAATGAATCAGAAGCCT
ACAGGTTAGCAGTATTGCAATGTCTTTTTACTACACACACACACACACAC
ACACACACACCCTTCCTTGCCTCATATGGGTTGGAGTGTATCATCTCCAC
CAAAAGACCATCTTATGTTCCTATATATACTCGGCGTACTGAATTTACTA
TGTCGCTGAAAGGAAAATGCATTGTGTTTTGAATTACTTTATCTGGTGAG
TATAGCACTAAGCCTAACTCCAATATTTGATTAGCTCATTGTAATCCTTT
TGAATCCTGCTGCTGACTACCATCTTGGTAGCTCAGGGGTTTACAAAACA
AAAAATCAACTAAACACTACTTTCATGCATTGAATCCATGTCATGATTAG
ACTTTTGTCACATCCATCGAAGGGCTAACATCCCAAATTAGGCAATCCCC
AAGCCTACCACTCAACCTTTGGGCACCACGGCAATGCAACCGCTGAGGTA
GTGCAGACAAACAGAAACCGCTGTTACGATAGAGAATACTGATTTCATGG
CTCAAGCTCTAGTCTGGAAAATCCCCTATTTCTGCACCCTAAGAAAGAGT
TTGTGGGTGGAGTGCCAACATGTTACAACATTTACCACATTCAGTATATA
TATATATATAGCATGATATATACTGACATCTTTTTCCTGTGTGGTGGTGG
TCATCATACCTTGCTGTTTGCTAAACCAACACTTCATTGCAAGCATTGAA
TACCAGCATTCCAACCTTTCAGTGTACCACTCCAGGTTCATAGATTGAGA
AACGTTACACTGCAGATGGTGAGATGTTTGGTGCGCTATTTCATTGCAAA
ATAAAATAATAATAAAAAATGTTTGCGATCTATCAATAGAACTAGCGTTT
CGATGCCTCCCAATTTGGAGATGGCGTAGCATGTCCTGGTACATCATACT
ACAGCGATCCCTACACACTTTCATATAGATCAACATGTCTACAATATAGT
CTCACGCAGGGCACACACACACAATGTGTTGCGTCCTCTCCTGGAATGAT
CTTTTTCGCAAAATCCATGCACACCCAGGGTTCATGAATGTTCCCCTTCC
AGTAAAGCCTTGGACCGCTTTTGATCTATCTACACACAGAAATGAGACAC
TACCATTCCTTCTTCTCGGCCAAGAGTAATAGATAGACCCTGTTCCCCTT
CCCCACACCCCTTTTCAGATAATGAACCTTCTGTTGAAGAAAGATTGTGA
TGTGGACGCTGCAAATGTGGATGGTGACAATGCCCTGAGCTTGGCCATTA
GCGCAGGAAAAGTTGGTGCAGTGGGCTACCTCATTGAGAAGGCAAATGCC
TCCCTTGAGTGCATCGATAAGGTCTGTTGGGGACGCAAGGGGTATCGCAC
TTGTGTGTGTTTGCTTGACGCACACAACCAATCTTGACAATATAGTTGTA
TTTTGTGGAGTCAACAAGAACATCGCCTTCTTTTGAAGAGCACAAAAAAC
CTTTATGGTAGAACATAGTCCTTAGGTAATATCAATAGTTTGGCTGGAGT
TTCCCAACACATAATAGCAGTCTTTGAAGAAAATTGGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig6693:751..4489-

>mRNA_C-tenellus_contig6693.2.1 ID=mRNA_C-tenellus_contig6693.2.1|Name=mRNA_C-tenellus_contig6693.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=618bp|location=Sequence derived from alignment at C-tenellus_contig6693:751..4489- (Choristocarpus tenellus KU2346)
ATGTTCGACTCTGAAAACAACGCTGTGACACCACTGATGTTCGCTACACA
GTACACCGGACTGATGAAATTGCAAGGCCAACCGTGGGCCTACTTCGGGG
CTGTTGTCAGGGTCCTTTTGGACGGGGGTGCCTCGGTTCACCTCACAGAC
AAGAAAGGCCGCACAGCGCTCATGTTTGCCGCTGAACTTGGTCATGTTGA
GGTGACAGGATGGCTCATTGCTTCAGGGTCTGATGTTGAAGCAGCAGATA
TCAATGGTACCCGCCCACTGATGTATGCCAGCATTGGGGCACATATGCAA
GTTGTGATGGCATTGCTGGAGGCTGGTGCTGACCCCAACACAACCAATTC
CAAAGGATCTGGCTCACTGCATTTTGCGGCCTCTGGGGGTTCACTACCGA
TAATGAACCTTCTGTTGAAGAAAGATTGTGATGTGGACGCTGCAAATGTG
GATGGTGACAATGCCCTGAGCTTGGCCATTAGCGCAGGAAAAGTTGGTGC
AGTGGGCTACCTCATTGAGAAGGCAAATGCCTCCCTTGAGTGCATCGATA
AGGTCTGTTGGGGACGCAAGGGGTATCGCACTTGTGTGTGTTTGCTTGAC
GCACACAACCAATCTTGA
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