mRNA_C-tenellus_contig6684.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6684.1.1
Unique NamemRNA_C-tenellus_contig6684.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig6684.1.1 vs. uniprot
Match: D8LF95_ECTSI (H(+)-exporting diphosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF95_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 5.900e-16
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:    1 PLTFSFLVIGAMLPYWFSAMTMKAVGTAAMEMVQEVERQFEE 126
            PLTFSFLVIGAMLPYWFSAMTMKAVGTAAMEMVQEVE QF+E
Sbjct:  521 PLTFSFLVIGAMLPYWFSAMTMKAVGTAAMEMVQEVEIQFDE 562
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BLAST of mRNA_C-tenellus_contig6684.1.1 vs. uniprot
Match: A0A835YSH3_9STRA (H(+)-exporting diphosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSH3_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.500e-15
Identity = 38/41 (92.68%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:    1 PLTFSFLVIGAMLPYWFSAMTMKAVGTAAMEMVQEVERQFE 123
            PLTFSFL+IGAMLPYWFSAMTMKAVGTAAMEMVQEV++QFE
Sbjct:  539 PLTFSFLLIGAMLPYWFSAMTMKAVGTAAMEMVQEVQQQFE 579
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BLAST of mRNA_C-tenellus_contig6684.1.1 vs. uniprot
Match: A0A7S2Y359_9STRA (H(+)-exporting diphosphatase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y359_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 8.690e-14
Identity = 35/42 (83.33%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:    1 PLTFSFLVIGAMLPYWFSAMTMKAVGTAAMEMVQEVERQFEE 126
            PLTF+FL+IGAMLP+WFSA+TMK+VGTAAMEMV EVERQF+E
Sbjct:  534 PLTFAFLLIGAMLPFWFSALTMKSVGTAAMEMVLEVERQFKE 575
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BLAST of mRNA_C-tenellus_contig6684.1.1 vs. uniprot
Match: A0A7S4D3X6_9EUGL (H(+)-exporting diphosphatase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4D3X6_9EUGL)

HSP 1 Score: 72.0 bits (175), Expect = 1.620e-13
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 PLTFSFLVIGAMLPYWFSAMTMKAVGTAAMEMVQEVERQFEEVSGI 138
            P TFSFL IGAMLPYWF+A+ MK+VGTAAM MV+EVERQF E+ G+
Sbjct:  562 PTTFSFLFIGAMLPYWFTALCMKSVGTAAMSMVKEVERQFREIPGL 607
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BLAST of mRNA_C-tenellus_contig6684.1.1 vs. uniprot
Match: A0A7S2XW66_9STRA (H(+)-exporting diphosphatase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW66_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.620e-13
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    1 PLTFSFLVIGAMLPYWFSAMTMKAVGTAAMEMVQEVERQFEE 126
            PL F+F +IGAMLPYWFSAMTMK+VGTAAMEMV+EVERQF E
Sbjct:  460 PLPFAFTLIGAMLPYWFSAMTMKSVGTAAMEMVREVERQFRE 501
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BLAST of mRNA_C-tenellus_contig6684.1.1 vs. uniprot
Match: A0A7S2MDG5_9STRA (H(+)-exporting diphosphatase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MDG5_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.220e-13
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 PLTFSFLVIGAMLPYWFSAMTMKAVGTAAMEMVQEVERQFEEVSGI 138
            PLTF+FL+IGAMLPYWFSAMTMK+VG AA EMV+EV RQF E  GI
Sbjct:  546 PLTFAFLLIGAMLPYWFSAMTMKSVGEAAGEMVEEVRRQFRENPGI 591
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BLAST of mRNA_C-tenellus_contig6684.1.1 vs. uniprot
Match: A0A7S1XPD7_9STRA (H(+)-exporting diphosphatase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XPD7_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.220e-13
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    1 PLTFSFLVIGAMLPYWFSAMTMKAVGTAAMEMVQEVERQFEE 126
            PL FSFL+IGAMLPYWFSAMTMK+VG AAMEMV+EV+RQF E
Sbjct:  559 PLVFSFLLIGAMLPYWFSAMTMKSVGLAAMEMVEEVKRQFAE 600
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BLAST of mRNA_C-tenellus_contig6684.1.1 vs. uniprot
Match: A0A7S0WQ41_9CHLO (H(+)-exporting diphosphatase (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WQ41_9CHLO)

HSP 1 Score: 70.9 bits (172), Expect = 4.140e-13
Identity = 33/46 (71.74%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 PLTFSFLVIGAMLPYWFSAMTMKAVGTAAMEMVQEVERQFEEVSGI 138
            P+TF+FL+IG+MLPYWFSA+TMK+VGTAA+ MV+EV RQF E +GI
Sbjct:  637 PVTFAFLLIGSMLPYWFSALTMKSVGTAALAMVEEVRRQFRENAGI 682
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BLAST of mRNA_C-tenellus_contig6684.1.1 vs. uniprot
Match: C1MKB6_MICPC (H(+)-exporting diphosphatase n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MKB6_MICPC)

HSP 1 Score: 70.9 bits (172), Expect = 4.140e-13
Identity = 32/46 (69.57%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 PLTFSFLVIGAMLPYWFSAMTMKAVGTAAMEMVQEVERQFEEVSGI 138
            P+ F+FL+IG+MLPYWFSAMTMK+VG AAMEMV+EV+RQF+ + G+
Sbjct:  546 PVVFAFLLIGSMLPYWFSAMTMKSVGVAAMEMVKEVKRQFDTIPGL 591
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BLAST of mRNA_C-tenellus_contig6684.1.1 vs. uniprot
Match: A0A7S0GRA2_MICPS (H(+)-exporting diphosphatase n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GRA2_MICPS)

HSP 1 Score: 70.5 bits (171), Expect = 5.020e-13
Identity = 31/46 (67.39%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 PLTFSFLVIGAMLPYWFSAMTMKAVGTAAMEMVQEVERQFEEVSGI 138
            P+ F+FL++G+MLPYWFSAMTMK+VG AAMEMV+EV+RQF+ + G+
Sbjct:  152 PVVFAFLLVGSMLPYWFSAMTMKSVGVAAMEMVKEVKRQFDTIPGL 197
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6684.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF95_ECTSI5.900e-1695.24H(+)-exporting diphosphatase n=2 Tax=Ectocarpus Ta... [more]
A0A835YSH3_9STRA1.500e-1592.68H(+)-exporting diphosphatase n=1 Tax=Tribonema min... [more]
A0A7S2Y359_9STRA8.690e-1483.33H(+)-exporting diphosphatase n=1 Tax=Fibrocapsa ja... [more]
A0A7S4D3X6_9EUGL1.620e-1373.91H(+)-exporting diphosphatase n=1 Tax=Eutreptiella ... [more]
A0A7S2XW66_9STRA1.620e-1383.33H(+)-exporting diphosphatase n=1 Tax=Fibrocapsa ja... [more]
A0A7S2MDG5_9STRA2.220e-1378.26H(+)-exporting diphosphatase n=1 Tax=Dictyocha spe... [more]
A0A7S1XPD7_9STRA2.220e-1383.33H(+)-exporting diphosphatase (Fragment) n=1 Tax=Ph... [more]
A0A7S0WQ41_9CHLO4.140e-1371.74H(+)-exporting diphosphatase (Fragment) n=1 Tax=Py... [more]
C1MKB6_MICPC4.140e-1369.57H(+)-exporting diphosphatase n=2 Tax=Micromonas pu... [more]
A0A7S0GRA2_MICPS5.020e-1367.39H(+)-exporting diphosphatase n=2 Tax=Micromonas pu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6684contigC-tenellus_contig6684:1524..2048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LF95
Preferred nameAVP1
PFAMsH_PPase
Model size141
Max annot lvl2759|Eukaryota
KEGG koko:K01507
KEGG Pathwayko00190,map00190
Hectar predicted targeting categorysignal peptide
GOsGO:0000325,GO:0001101,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0006810,GO:0006811,GO:0006950,GO:0006970,GO:0007275,GO:0008150,GO:0009414,GO:0009415,GO:0009507,GO:0009526,GO:0009536,GO:0009628,GO:0009651,GO:0009678,GO:0009705,GO:0009914,GO:0009926,GO:0009941,GO:0010008,GO:0010035,GO:0010248,GO:0010817,GO:0012505,GO:0015399,GO:0015405,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0022804,GO:0022857,GO:0031090,GO:0031410,GO:0031967,GO:0031975,GO:0031982,GO:0032501,GO:0032502,GO:0034220,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044433,GO:0044434,GO:0044435,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0060918,GO:0065007,GO:0065008,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0099402,GO:1901700
Exons2
Evalue9.68e-17
EggNOG OGsCOG3808@1|root,2QPJC@2759|Eukaryota
EC3.6.1.1
Descriptionhydrogen-translocating pyrophosphatase activity
Cds size141
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789984.8840065-CDS-C-tenellus_contig6684:1523..15701680789984.8840065-CDS-C-tenellus_contig6684:1523..1570Choristocarpus tenellus KU2346CDSC-tenellus_contig6684 1524..1570 +
1680789984.9013531-CDS-C-tenellus_contig6684:1954..20481680789984.9013531-CDS-C-tenellus_contig6684:1954..2048Choristocarpus tenellus KU2346CDSC-tenellus_contig6684 1955..2048 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6684.1.1prot_C-tenellus_contig6684.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6684 1524..2048 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6684.1.1

>prot_C-tenellus_contig6684.1.1 ID=prot_C-tenellus_contig6684.1.1|Name=mRNA_C-tenellus_contig6684.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=47bp
PLTFSFLVIGAMLPYWFSAMTMKAVGTAAMEMVQEVERQFEEVSGI*
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mRNA from alignment at C-tenellus_contig6684:1524..2048+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6684.1.1 ID=mRNA_C-tenellus_contig6684.1.1|Name=mRNA_C-tenellus_contig6684.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=525bp|location=Sequence derived from alignment at C-tenellus_contig6684:1524..2048+ (Choristocarpus tenellus KU2346)
CCCTTGACTTTCAGCTTCTTGGTTATTGGGGCCATGCTCCCCTACTGGTG
TGTTTAATACCCTATGTGTGTGTCATGTTAGCAATGCAGACCTTTTCCTC
CTGCCCTGCCTGCCCTTTCATGTCCTACGGTGATCCTTTAACCCTCCCTG
CAGTTTGTACTTTTAGAGGTAGTCATCATTTCCTACTTCACCCCGCCTGC
TACCATCTTCACTCTACTGAGGACTGTATATAGTGTGTTGTGACGATATT
CTTTTACAAGTCGATCAATAGTCGATCTGTTGTTTCCTGACGACAATTGA
TTCTTGTTATGCTTCTGCATACTTGTTTGTTCATTCCCCTATTTTCCCCT
TCTCCATGTGTTTCCCCAGTCTCACCGATAAAGTTTTATTTTTGTGTTTC
AACCTCTGTCTTGGGCATTAAATCTAATCAGGTTCTCTGCAATGACCATG
AAGGCGGTGGGGACAGCTGCTATGGAGATGGTGCAGGAAGTAGAGAGGCA
GTTTGAGGAGGTGAGTGGAATTTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig6684:1524..2048+

>mRNA_C-tenellus_contig6684.1.1 ID=mRNA_C-tenellus_contig6684.1.1|Name=mRNA_C-tenellus_contig6684.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=141bp|location=Sequence derived from alignment at C-tenellus_contig6684:1524..2048+ (Choristocarpus tenellus KU2346)
CCCTTGACTTTCAGCTTCTTGGTTATTGGGGCCATGCTCCCCTACTGGTT
CTCTGCAATGACCATGAAGGCGGTGGGGACAGCTGCTATGGAGATGGTGC
AGGAAGTAGAGAGGCAGTTTGAGGAGGTGAGTGGAATTTGA
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