mRNA_C-tenellus_contig6683.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6683.3.1
Unique NamemRNA_C-tenellus_contig6683.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig6683.3.1 vs. uniprot
Match: UPI001F0B79BD (class I SAM-dependent methyltransferase n=1 Tax=Streptomyces sp. LAM7114 TaxID=2487275 RepID=UPI001F0B79BD)

HSP 1 Score: 144 bits (362), Expect = 3.940e-36
Identity = 82/198 (41.41%), Postives = 109/198 (55.05%), Query Frame = 2
Query:  368 AMPGLKIVGVEPIEAMRREFKQALPEVHIVEGTGEAIPLPHESALAVIAAQSFHWMSTPDVLKEIHRVLLPGGLLALIWNTRDVSVPWVRALDDIIDPFYGPSVPRQQSGRWRDAFVGMEG-GGVGTREKRSSTSSLFGPLTERHFRHSQ---QPESEQLEAIRKAKELVETHEGTQEDVIQGRGIDLPYDTEVYWCR 949
            A+ G ++V VEP+  MR    + LP V++  GT EA  LP  SA AV+AAQS+HW    D L E+ R+L PGG LAL+WNT D SVPWVR   DII  F    +P    G WR AF G +G G +  R   +  S+    + ER    S       +EQ     +   ++ +H+ T+ +   GR IDLPY T+VYW R
Sbjct:   60 ALTGAEVVAVEPVAEMRERLAELLPGVNVTAGTAEATGLPDASADAVVAAQSWHWFQEADALAEVERLLRPGGALALVWNTYDTSVPWVRDFQDIIFRFAPRDLPSPLDGGWRKAFAGRDGWGAISERHWPNPHSTTVTDVVERMMSSSHVAVMSPAEQEGVRAEVLSVLGSHDATRRE---GR-IDLPYTTDVYWVR 253          
BLAST of mRNA_C-tenellus_contig6683.3.1 vs. uniprot
Match: UPI0019141BBC (class I SAM-dependent methyltransferase n=1 Tax=Pseudomonas sp. TH03 TaxID=2796369 RepID=UPI0019141BBC)

HSP 1 Score: 143 bits (361), Expect = 5.620e-36
Identity = 80/198 (40.40%), Postives = 115/198 (58.08%), Query Frame = 2
Query:  377 GLKIVGVEPIEAMRREFKQALPEVHIVEGTGEAIPLPHESALAVIAAQSFHWMSTPDVLKEIHRVLLPGGLLALIWNTRDVSVPWVRALDDIIDPFYGPSVPRQQSGRWRDAFVGMEGGGVG-TREKRSSTSSLFGPLTERHFRHS---QQPESEQLEAIRKAKELVETHEGTQEDVIQGRG-IDLPYDTEVYWCRKM 955
            G+ +V +EP+EAMR EF + LP+V I+EGT E+IPL   +A A++ AQ+FHW +T   L EIHRVL P G L LIWN RD SV WV A+ DII P+ G + PR  +G WR  F+G        T    + T S    + +R    S     P +E+ + + + + L++TH       ++GR  I+ PY T+ Y C ++
Sbjct:   64 GIDVVAIEPVEAMRTEFAKNLPDVRILEGTAESIPLESGTAQALVCAQAFHWFATEPALAEIHRVLKPNGRLGLIWNVRDESVDWVAAITDIITPYEGDT-PRFHNGNWRRPFIGRYFSDPEVTCFPYTQTGSAQEVIIDRFMSVSFIAALPPAEKAKVVEQLQALIQTHPS-----LRGRETIEFPYQTQAYVCHRL 255          
BLAST of mRNA_C-tenellus_contig6683.3.1 vs. uniprot
Match: A0A329I8R9_9PSED (SAM-dependent methyltransferase n=1 Tax=Pseudomonas sp. RIT 412 TaxID=2202161 RepID=A0A329I8R9_9PSED)

HSP 1 Score: 137 bits (345), Expect = 1.110e-33
Identity = 76/212 (35.85%), Postives = 114/212 (53.77%), Query Frame = 2
Query:  383 KIVGVEPIEAMRREFKQALPEVHIVEGTGEAIPLPHESALAVIAAQSFHWMSTPDVLKEIHRVLLPGGLLALIWNTRDVSVPWVRALDDIIDPFYGPSVPRQQSGRWRDAFVGMEGGGVGTREKRSSTSSLFGP--LTERHFRHSQQ------------------PESEQLEAIRKAKELVETHEGTQEDVIQGRGI-DLPYDTEVYWCRKM 955
            +++ VEP+EAMRREF + LP + +++GT +++PL   S  A++ AQ+FHW +    L EIHRVL+PGG L L+WN RD SV WV  +  II P+ G + PR  +G+WR  F                 S  FG   LT  ++ HS                    PE+E+ E   + +EL++TH       ++GR + + PY T+ Y CR++
Sbjct:   66 RLIAVEPVEAMRREFARGLPRIAVIDGTAQSLPLADGSVDALVCAQAFHWFADDTALAEIHRVLVPGGRLGLVWNVRDESVDWVAEITRIITPYEGDT-PRFHTGQWRRPF---------------QDSHCFGQPELTCFNYHHSGSAETVIMNRFLSVSFIAALPEAEKAEVTAQLRELIQTH-----PALRGREVVEFPYQTQAYLCRRL 256          
BLAST of mRNA_C-tenellus_contig6683.3.1 vs. uniprot
Match: UPI0018F668A3 (class I SAM-dependent methyltransferase n=1 Tax=Sandaracinobacteroides hominis TaxID=2780086 RepID=UPI0018F668A3)

HSP 1 Score: 135 bits (339), Expect = 7.560e-33
Identity = 72/183 (39.34%), Postives = 97/183 (53.01%), Query Frame = 2
Query:  377 GLKIVGVEPIEAMRREFKQALPEVHIVEGTGEAIPLPHESALAVIAAQSFHWMSTPDVLKEIHRVLLPGGLLALIWNTRDVSVPWVRALDDIIDPFYGPSVPRQQSGRWRDAFVGMEGGGVGTREKRSSTSSLFGPLTERHFRHSQQPESEQLEAIRKAKELVETHEGTQEDVIQGRGIDLPY 925
            G +++ VEP+ AMR    +A P+V  +EGT E IPLP +SA A++ AQ+FHW +TP  L E+HRVL PGG+L LIWN RD  V WV  L  +IDP +G   PR +SG+WR  F                 ++ F  + E HFR+                     H G  EDVI GR + + +
Sbjct:   64 GAEVIAVEPVAAMRARLSEAFPQVKALEGTAEQIPLPAQSADAIVCAQAFHWFATPAALAEMHRVLKPGGMLGLIWNVRDERVDWVARLSALIDP-HGGDAPRYRSGKWRQQFP----------------AAGFRHVGEAHFRND--------------------HVGPAEDVIVGRTLSVSF 209          
BLAST of mRNA_C-tenellus_contig6683.3.1 vs. uniprot
Match: A0A1V9UP80_9PSED (SAM-dependent methyltransferase n=1 Tax=Pseudomonas sp. Bc-h TaxID=1943632 RepID=A0A1V9UP80_9PSED)

HSP 1 Score: 133 bits (334), Expect = 3.970e-32
Identity = 79/195 (40.51%), Postives = 106/195 (54.36%), Query Frame = 2
Query:  386 IVGVEPIEAMRREFKQALPEVHIVEGTGEAIPLPHESALAVIAAQSFHWMSTPDVLKEIHRVLLPGGLLALIWNTRDVSVPWVRALDDIIDPFYGPSVPRQQSGRWRDAFVGMEGGGVG-TREKRSSTSSLFGPLTERHFRHS---QQPESEQLEAIRKAKELVETHEGTQEDVIQGRG-IDLPYDTEVYWCRKM 955
            ++GVEP+ AMR EF   LP+V IV GT ++IPLP  SA AV+ AQ+FHW +    L +IHRVL PGG L L+WN RD SV WV  +  II P+ G + PR  +G WR  F G        T    S T +    +  R    S     P +E+     + +EL+ TH       ++GR  I  PY T+ Y CR++
Sbjct:   67 LIGVEPVHAMRSEFAAHLPDVRIVPGTAQSIPLPDSSADAVVCAQAFHWFADSAALAQIHRVLKPGGKLGLVWNVRDESVDWVAEITRIITPYEGDT-PRFHTGNWRLPFDGRYFSAPEMTCFNYSHTGNAETVIMNRFLSVSFIAALPAAEKATVTEQLRELINTH-----PALRGRETIAFPYQTQAYLCRRL 255          
BLAST of mRNA_C-tenellus_contig6683.3.1 vs. uniprot
Match: T1ATE4_9ZZZZ (Methyltransferase type 11 n=1 Tax=mine drainage metagenome TaxID=410659 RepID=T1ATE4_9ZZZZ)

HSP 1 Score: 134 bits (336), Expect = 4.210e-32
Identity = 80/209 (38.28%), Postives = 107/209 (51.20%), Query Frame = 2
Query:  386 IVGVEPIEAMRREFKQALPEVHIVEGTGEAIPLPHESALAVIAAQSFHWMSTPDVLKEIHRVLLPGGLLALIWNTRDVSVPWVRALDDIIDPFYGPSVPRQQSGRWRDAFVGMEGGGVGTREKRSSTSSLFGPLTERHFRHSQ-------------------QPESEQLEAIRKAKELVETHEGTQEDVIQGRG-IDLPYDTEVYWCRK 952
            +V VEP   MR EF + +P++ +++GT EAIP        V+ AQ+FHW      L+EI RVL PGG L L+WN RD  VPW+R    I++  Y   VPR +  RWR AF   E GG+            FGPL  R F H Q                   QP +EQ +  R+ +EL+       + + +GR  ID+PY TEVYWC +
Sbjct:   80 LVPVEPTRGMREEFARRIPDLPVLDGTAEAIPXXXXXXXXVLVAQAFHWFRARVALREIARVLRPGGGLGLVWNMRDERVPWMREFTQILED-YNWGVPRTRQRRWRPAF---ERGGI-----------PFGPLHHRTFHHIQWVHIPGVVARALSVSMIAVQPVAEQRKVARRIRELL-----ASDPMTRGRRLIDIPYRTEVYWCHR 268          
BLAST of mRNA_C-tenellus_contig6683.3.1 vs. uniprot
Match: A0A8J6VPN7_9CYAN (Methyltransferase domain-containing protein n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A8J6VPN7_9CYAN)

HSP 1 Score: 133 bits (334), Expect = 4.280e-32
Identity = 76/211 (36.02%), Postives = 108/211 (51.18%), Query Frame = 2
Query:  377 GLKIVGVEPIEAMRREFKQALPEVHIVEGTGEAIPLPHESALAVIAAQSFHWMSTPDVLKEIHRVLLPGGLLALIWNTRDVSVPWVRALDDIIDPFYGPSVPRQQSGRWRDAFVGMEGGGVGTREKRSSTSSLFGPLTERHFRHSQQPESE-------------------QLEAIRKAKELVETHEGTQEDVIQGRGIDLPYDTEVYWCRK 952
            G ++V +EP+E MR++F+  LP + ++ GT E+IPL   S   V  AQ+FHW      L EIHRVL PGG L LIWN RD S  WV  +  II P  G + PR ++G+WR AF                 + LF PL  + F ++ Q + +                   Q   +R+ +EL+E H  T++  I    I+ PY TEV+WC +
Sbjct:   67 GCQVVAIEPVEGMRQKFEALLPNIPVLNGTAESIPLAAASTDVVTVAQAFHWFQGEAALAEIHRVLKPGGYLGLIWNVRDESFDWVAQISAIITPHEGDA-PRYRTGQWRTAF---------------EQTDLFTPLETQIFSYAHQYDLDAAIDRVASISFIAALNAQTQQTVLRQVRELLEHHPQTRDRPI----IEHPYRTEVFWCTR 257          
BLAST of mRNA_C-tenellus_contig6683.3.1 vs. uniprot
Match: A0A2T4FP75_9PSED (Class I SAM-dependent methyltransferase n=6 Tax=Pseudomonas TaxID=286 RepID=A0A2T4FP75_9PSED)

HSP 1 Score: 132 bits (333), Expect = 5.510e-32
Identity = 75/205 (36.59%), Postives = 115/205 (56.10%), Query Frame = 2
Query:  386 IVGVEPIEAMRREFKQALPEVHIVEGTGEAIPLPHESALAVIAAQSFHWMSTPDVLKEIHRVLLPGGLLALIWNTRDVSVPWVRALDDIIDPFYGPSVPRQQSGRWRDAFVG----------MEGGGVGTREK----RSSTSSLFGPLTERHFRHSQQPESEQLEAIRKAKELVETHEGTQEDVIQGRG-IDLPYDTEVYWCRKM 955
            ++ VEP++AM  +  + LP+V +V+GT +++PL   SA AV+ AQ+FHW ST   L+EIHRVL P G L L+WN RD SV WV A+  II P+ G + PR  +GRWR+AF G               VG+ ++    R  + S    L          P++E+ +   + ++L++TH       ++GR  +  PY T+ Y CR++
Sbjct:   67 LIAVEPVQAMGAQLSKLLPDVRLVDGTADSMPLAAASADAVVCAQAFHWFSTQAALQEIHRVLKPAGRLGLVWNVRDESVAWVAAITAIITPYEGDT-PRFHTGRWREAFTGELFSAPELSCFPYSHVGSPQEVIMDRFLSVSFIAAL----------PDAEKAKVTAQLQDLIDTHPD-----LRGRDTVAFPYQTQAYVCRRL 255          
BLAST of mRNA_C-tenellus_contig6683.3.1 vs. uniprot
Match: A0A126S4J6_PSEPU (Methyltransferase n=17 Tax=Pseudomonas TaxID=286 RepID=A0A126S4J6_PSEPU)

HSP 1 Score: 132 bits (332), Expect = 7.630e-32
Identity = 74/206 (35.92%), Postives = 109/206 (52.91%), Query Frame = 2
Query:  383 KIVGVEPIEAMRREFKQALPEVHIVEGTGEAIPLPHESALAVIAAQSFHWMSTPDVLKEIHRVLLPGGLLALIWNTRDVSVPWVRALDDIIDPFYGPSVPRQQSGRWRDAFVGM--------------EGGGVGTREKRSSTSSLFGPLTERHFRHSQQPESEQLEAIRKAKELVETHEGTQEDVIQGRG-IDLPYDTEVYWCRKM 955
            ++  VEP+ AMR  F + LPEV ++EGT + IPL   S   ++ AQ+FHW +    L+E+HRVL PGG L LIWN RD +V WV  + +II P+ G + PR  +GRWRDAF G               EG       +R  + S    L          P++EQ   + + ++LV+ H       ++GR  +  PY T+ Y C+++
Sbjct:   66 RLTAVEPVAAMRERFHERLPEVPVLEGTAQHIPLADASQQVLVCAQAFHWFADAAALREMHRVLAPGGRLGLIWNVRDETVDWVARITEIITPYEGDT-PRFHTGRWRDAFAGSRFSAPQLTTLPHVHEGNPQTVILERLRSVSFIAAL----------PQAEQDRVMARLQDLVDNH-----PALKGRERVAFPYQTQAYVCQRL 255          
BLAST of mRNA_C-tenellus_contig6683.3.1 vs. uniprot
Match: A0A538LKY4_9ACTN (Class I SAM-dependent methyltransferase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538LKY4_9ACTN)

HSP 1 Score: 132 bits (331), Expect = 8.870e-32
Identity = 80/211 (37.91%), Postives = 102/211 (48.34%), Query Frame = 2
Query:  377 GLKIVGVEPIEAMRREFKQALPEVHIVEGTGEAIPLPHESALAVIAAQSFHWMSTPDVLKEIHRVLLPGGLLALIWNTRDVSVPWVRALDDIIDPFYGPSVPRQQSGRWRDAFVGMEGGGVGTREKRSSTSSLFGPLTERHFRHSQQ-------------------PESEQLEAIRKAKELVETHEGTQEDVIQGRGIDLPYDTEVYWCRK 952
            G ++V VEP+  MR    + +P   +V+G  EA+PLP  SA AV  AQ+FHW ST + L EIHRVL PGG LAL+WN RD+  P   A D ++    G  VP  +SGRWR AF   E               LFGPL E  F H Q+                   P+ EQ  A+ + KEL            Q   I L Y T++Y C +
Sbjct:   63 GARVVAVEPVAGMRSTLARVVPLAEVVDGAAEAMPLPDGSADAVTVAQAFHWFSTGEALAEIHRVLRPGGGLALVWNRRDLDEPLQAATDRLVARHRG-DVPTHRSGRWRSAFEATE---------------LFGPLEEHLFSHGQELDRAGLVERVMSTSVMAALPDDEQRAAVAEIKELA---------ARQPEPIRLSYTTQIYLCWR 248          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6683.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001F0B79BD3.940e-3641.41class I SAM-dependent methyltransferase n=1 Tax=St... [more]
UPI0019141BBC5.620e-3640.40class I SAM-dependent methyltransferase n=1 Tax=Ps... [more]
A0A329I8R9_9PSED1.110e-3335.85SAM-dependent methyltransferase n=1 Tax=Pseudomona... [more]
UPI0018F668A37.560e-3339.34class I SAM-dependent methyltransferase n=1 Tax=Sa... [more]
A0A1V9UP80_9PSED3.970e-3240.51SAM-dependent methyltransferase n=1 Tax=Pseudomona... [more]
T1ATE4_9ZZZZ4.210e-3238.28Methyltransferase type 11 n=1 Tax=mine drainage me... [more]
A0A8J6VPN7_9CYAN4.280e-3236.02Methyltransferase domain-containing protein n=4 Ta... [more]
A0A2T4FP75_9PSED5.510e-3236.59Class I SAM-dependent methyltransferase n=6 Tax=Ps... [more]
A0A126S4J6_PSEPU7.630e-3235.92Methyltransferase n=17 Tax=Pseudomonas TaxID=286 R... [more]
A0A538LKY4_9ACTN8.870e-3237.91Class I SAM-dependent methyltransferase n=1 Tax=Ac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6683contigC-tenellus_contig6683:2286..6824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1265490.JHVY01000008_gene3914
PFAMsMethyltransf_11
Model size1461
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.73e-38
EggNOG OGsCOG0500@1|root,COG2226@2|Bacteria,1R51W@1224|Proteobacteria,1SFJF@1236|Gammaproteobacteria
DescriptionMethyltransferase domain
Cds size630
COG categoryQ
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6683.3.1prot_C-tenellus_contig6683.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6683 2614..6321 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789984.777795-UTR-C-tenellus_contig6683:2285..26131680789984.777795-UTR-C-tenellus_contig6683:2285..2613Choristocarpus tenellus KU2346UTRC-tenellus_contig6683 2286..2613 +
1680789984.8496814-UTR-C-tenellus_contig6683:6321..68241680789984.8496814-UTR-C-tenellus_contig6683:6321..6824Choristocarpus tenellus KU2346UTRC-tenellus_contig6683 6322..6824 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789984.792134-CDS-C-tenellus_contig6683:2613..27461680789984.792134-CDS-C-tenellus_contig6683:2613..2746Choristocarpus tenellus KU2346CDSC-tenellus_contig6683 2614..2746 +
1680789984.8017209-CDS-C-tenellus_contig6683:3484..36591680789984.8017209-CDS-C-tenellus_contig6683:3484..3659Choristocarpus tenellus KU2346CDSC-tenellus_contig6683 3485..3659 +
1680789984.8113248-CDS-C-tenellus_contig6683:4382..45021680789984.8113248-CDS-C-tenellus_contig6683:4382..4502Choristocarpus tenellus KU2346CDSC-tenellus_contig6683 4383..4502 +
1680789984.8221765-CDS-C-tenellus_contig6683:5540..56001680789984.8221765-CDS-C-tenellus_contig6683:5540..5600Choristocarpus tenellus KU2346CDSC-tenellus_contig6683 5541..5600 +
1680789984.835457-CDS-C-tenellus_contig6683:6179..63211680789984.835457-CDS-C-tenellus_contig6683:6179..6321Choristocarpus tenellus KU2346CDSC-tenellus_contig6683 6180..6321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6683.3.1

>prot_C-tenellus_contig6683.3.1 ID=prot_C-tenellus_contig6683.3.1|Name=mRNA_C-tenellus_contig6683.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=210bp
MLQLYLALITCWDAMPGLKIVGVEPIEAMRREFKQALPEVHIVEGTGEAI
PLPHESALAVIAAQSFHWMSTPDVLKEIHRVLLPGGLLALIWNTRDVSVP
WVRALDDIIDPFYGPSVPRQQSGRWRDAFVGMEGGGVGTREKRSSTSSLF
GPLTERHFRHSQQPESEQLEAIRKAKELVETHEGTQEDVIQGRGIDLPYD
TEVYWCRKM*
back to top

mRNA from alignment at C-tenellus_contig6683:2286..6824+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6683.3.1 ID=mRNA_C-tenellus_contig6683.3.1|Name=mRNA_C-tenellus_contig6683.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4539bp|location=Sequence derived from alignment at C-tenellus_contig6683:2286..6824+ (Choristocarpus tenellus KU2346)
CACCCGAGATTTGCTTCCATATTCGCACGAAGAAGTTAAGTATTCGACTA TAATCACCAGGTGTTCTGTACTCTACCTTCAGGTGACCAATACAACCGGG AGAGGGTCCTCCTAACGCAGTCATGCACCCAACTGTTAACTATTTCAAAG ACATGAATGCACTCTATTTCGTGTATCACAGTCAGTGCACGTCGCACACT ATCTTAACAGCGTAATAATGGCATACTTGCAACGGCACTGTTTTGAACAA CTCGTGTGTGGCGATTATACCTCGTAGTGTAGTAACCGTCCATCCCTGGA ACTGCATAAGCTCCTGAAGGACCCACTGATGCTCCAACTGTACCTTGCGC TTATCACTTGTTGGGATGCTATGCCAGGTCTGAAAATTGTTGGCGTTGAG CCTATTGAAGCCATGCGGCGGGAGTTCAAGCAGGCGCTGCCAGAAGTACA TATTGTGGAGGGTGAGATATTGATTAGCTCCACACAGTGCTGTCTACTCT GTGCTTTGTGGTTATGAGGGGTGAGAGTAAGCAGGGGGTATATGGACTAT GCTAATATCATATTAAATGTATATTTTTGTACATATATTTATGCTCACAG GTACAACACAGTGTATAGGCTCAAAGCATCTGGGGAGGGTGGTGGCGGCT GTCCATTTGGGATCCTTTTTTTCATGTCACGATTTTTTTGTGGTTTGGTT GCATACAACGAATGGATAATGTAAATGCACTTTTCCTGATTTTGACCCAA ATAAACACCCTGGTGTAACTCCCCCCCCCCATATACTTTGAATCACATTT GTAGTACCTGGTACTCGATACCTCCCACATTAGGAGAAGAATTGTATAGT AGCCCCATCCTACACCATTAATAGTATAAAGCAGGATTTGCCGGAGATGA CAAAATATCTCTACTTCTCCATTACTGGTGTAACCTCTTGGCTTACAAGC TGACCATGAGCTTGTACTAACACAATGGTACTGAAATATTTGAACATGCC CAACGACAAAGACTGTCTATCCATACCCTCTTGACTCTTCCCTTGACTGA CTTCCCACGCCTCCCTCTTGCCACCCTCCGAACACATCACTCTCCCTAGA ACACCCAATACAACAAACTACTCCCCTATGCCAGGAATCCTTCCCCTTGC CCATACCATCTTTGATTTGTCCAAAGCCTTCGATGATGATGGAAAACAGG TACGGGAGAGGCTATACCGTTGCCCCACGAATCAGCTCTGGCTGTGATTG CTGCGCAGTCTTTCCATTGGATGTCAACCCCTGATGTATTGAAAGAGATA CACAGGGTGTTGCTGCCAGGGGGTCTGCTGGCACTCATTTGGAACACAAG AGATGTGTCGGTACCATGGGTGAGGTGAGGCCTCTATAGTGGTACTGGCA AACAAATACTTTGAGTAGAAGAAAAGGGCAAGGTGTTGAAGTGGAGGGCG ATTTTGATGCATTGCCATCAAGAGTGAGAGATAAATCAGAATCCCTGGAG ATGTGTAATGAGTTTGGTGAGTTAAGTCAGGACAGTGTAGGGTATATGGA AGAGAGGATTTGGTAGGTGAGTGTACTCAACAACAGTATGAAAGAAGTGG GATGGAAATGGACATTGAATAGAGAGGGTGAAGGAGAGGGGTGAAGGGTG ACGTTGCTTGGATAGGGGGCGATCACCATCCAGGTGTGCCTTCACAGGAA ATATAGTTAGTTATGGGGATGGAGAGTGAAAGTATTTAAGAGAGTAGGGC CGCGTCCGTTTGGGGTCATAAATCCAATGTTGCGATTTTGATTCATTTGG GCTATTGTGTTTGTTAGCAGGTGTCAATATCCTTTCTCCGGACACACCTT TTCATAGTCGTATACATTTTAGGTAACTGTGTTCAAATAGAAAACCTATT AAGGGCATAATAACACATGGGGAGTCAAGCCCTGAACGGATAAAGAGGGA AAAACTCGTACCCTCTTAAATTCTTTGGCCCTGCAGTATCCTCCAAATAT CTCGAGTAGTGTGGATAGCATGACCGTCTTCATGCTATCCACTGTAGCCT CCCTGATAAAACACTGATACTCCTTCATCAATTTTTGTACTGAACAGGGC TCTGGATGACATTATTGACCCCTTCTACGGCCCCAGTGTACCCCGACAGC AGTCTGGGCGCTGGAGAGATGCTTTTGTCGGTATGGAGGGGGGTGGGGTA GGGACCAGGGAAAAGAGGTGAGATTGGTTTATGTTTGTTATCGTCCAGTG TGCTGCTCTGGAAAGTACTCCTGAGCACTCAGACTGGCTACAGTACCAAG TATGACGTATTTTTCCATGAGGGGCAAGTTAGGCACAAGGAGGTTGGTTC TATATGCGATACATCTATGTCTGCCGCTAGGGTGAAATGTTTTCTTTACT GGTGATTGTTAGCCAGATGTATCCCATCATCTGACAGCATTGGCAAGGTG AACAATACTACACGTTTGTAGAGTATGAAGGGGAGTGATGCAGGTACCTA TTTTGTGCTTTCTTTTCCTACAGTGCTGTTGTTGGCATTGACTACCTACT TAGCTAAAGGGGAGGATCGTTCCCTTGTGATTGTTTGCATCCTCTGCTTT GATGATGCTCTTGCTTGGGTTCGATGAGGGTTAGAAATGACAGGCAACCT CCGTTAGGCATTGGTCGTGAGAGTGGCCATGATTTTGGGGTGGTCAGGGG GTGTTGCAGGGTGAATGATATAGATATTTTGCCCAGTGATTTGTGCTTAC GGATGCCATTGTTCCATTGGTGGGAATACTGCTTGTCATGTCATGTCCCC TAGCAATCTTGACATGTCCCTTGCATTATCTCTATGCAGGTAAGGCTTGT GATCGCTGCGATCCATGCCTGTAACCATACATCAATAGCACGCTGTATGT CTTGTATATAATATGCCCCTGGCAGAGTTTCAGTGGCAAGTGCTAGACTC AGCTACGGCTTAGACTTGTAGCACATAGGGACAATACCCCTGTAATGCAT AAACCTACCTCCGCCTCGTCATTTTTTTCAATGGCCTGGCCCTTGTTTGC TTGTGTGAACTGGAATGACGAGCCCTAGTATCAGGTACTCACAGGCGAGA CTCCTGACCCCAACAACTATACTTGGTGTAGCATGTACACTTGGATGCTG CCATTGTGCAACAGTTGCCCCCACCACATTGCTATTCCACCCCCGATCCC CTCCATTTTCCGACTCGAGTGTCTTGACCTCAGCAATGCCTCTACGCTTT GACAGGAGCAGCACTTCCAGTCTATTTGGACCTCTTACAGAGCGGCACTT CCGACATTCCCAGCAGTTGAGTATCCCAGAGCTGGAGGGCCGTCTACGGA GTATAAGTGCAATTGGCACTCGGTACGTGTATGCTGTTTTTTTCCCTTAA ATATTTTCACAATAACCTTTGCCCTACTCTGTGTGAATGGTACTGTTTCC CAAACATGGCTGTTCCATTCCAACTGGTGCATTCCCTCTTCAATTTCTGT TGAGCATACTGAGTGCCAAGCAATAATGCAGATAACATAGGCTGCAGTTG CTAGGTTTTGTTGCTTGTGGTAAGCTGTTTTTTGGGTGTGCATCAATCCA ATCCCCACCTTCGGGTTGTTTGTTACTATTTATAGCTCTTACCTTCGTTA TGTTCTCTTTAGCCTGGGGACTGTCCTACCCAGTGGTCAAACGCACTACA GCCTGCATTTCTGCTTCTCATGAAATATTCACTACCTGTTGCCTTACATC TGATCGCAGTTCCTTTGTTCATCCCTAGCTTCTTTGGATTTTGCACCCCA AACGGATGTGGCGCTACAGTCTTAAATGCTTTTGACTCAAAGATACTTTT CCTTCACCCCCTTACCGGTGTTGATCTATCCACCATGCCTCTAGACCTGA ATCGGAACAGTTGGAAGCCATTCGTAAGGCGAAGGAGCTTGTCGAAACTC ACGAGGGTACGCAAGAGGACGTGATCCAAGGCCGGGGCATTGATTTGCCG TACGATACGGAGGTTTATTGGTGTCGCAAAATGTAATGGTGTTTGCCTTC ATTCATATAATGTGACTATTCTTACACAATAATGTAATGGTACGTACTTT GTGGTGGGTAGTTACTAAAGTGTGAAGTGTAATAAAAGCTCTTCCTTGCT TTTTGTAACAATCGTCGAGTTTGTAGATGAAGAAATGCAACACTATTTCT AAAGGTATCTTACGAGTGGAGGTGTTCGTTCATTCCTGCTGTGGTGGGAT GTACCAAGATGTGGAACACGAGAGACTTGAGAAAGAAGAGACTCTACAGA GGCTTGACATGTTTCCGAGAAATATTTAATGCCTTGGATACGTGCACATG GCTAAGGTAACTGATGAGTGTATTTCCTCTTGCATGTGTACTCCCACCTT GCAGACAGAGGATGCTATACCAACAATTCTCATGTATGACATACTTCTTA GTTTCCTACGACCCACTGCCATACACCCAAGCGTAAGTCCACTGCTTATT CCTTGTTGTGCCTGTCGGCATGACCTGGTGATACAGGAC
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig6683:2286..6824+

>mRNA_C-tenellus_contig6683.3.1 ID=mRNA_C-tenellus_contig6683.3.1|Name=mRNA_C-tenellus_contig6683.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=630bp|location=Sequence derived from alignment at C-tenellus_contig6683:2286..6824+ (Choristocarpus tenellus KU2346)
ATGCTCCAACTGTACCTTGCGCTTATCACTTGTTGGGATGCTATGCCAGG
TCTGAAAATTGTTGGCGTTGAGCCTATTGAAGCCATGCGGCGGGAGTTCA
AGCAGGCGCTGCCAGAAGTACATATTGTGGAGGGTACGGGAGAGGCTATA
CCGTTGCCCCACGAATCAGCTCTGGCTGTGATTGCTGCGCAGTCTTTCCA
TTGGATGTCAACCCCTGATGTATTGAAAGAGATACACAGGGTGTTGCTGC
CAGGGGGTCTGCTGGCACTCATTTGGAACACAAGAGATGTGTCGGTACCA
TGGGTGAGGGCTCTGGATGACATTATTGACCCCTTCTACGGCCCCAGTGT
ACCCCGACAGCAGTCTGGGCGCTGGAGAGATGCTTTTGTCGGTATGGAGG
GGGGTGGGGTAGGGACCAGGGAAAAGAGGAGCAGCACTTCCAGTCTATTT
GGACCTCTTACAGAGCGGCACTTCCGACATTCCCAGCAACCTGAATCGGA
ACAGTTGGAAGCCATTCGTAAGGCGAAGGAGCTTGTCGAAACTCACGAGG
GTACGCAAGAGGACGTGATCCAAGGCCGGGGCATTGATTTGCCGTACGAT
ACGGAGGTTTATTGGTGTCGCAAAATGTAA
back to top