mRNA_C-tenellus_contig6683.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6683.2.1
Unique NamemRNA_C-tenellus_contig6683.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6683.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6683contigC-tenellus_contig6683:1777..2224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size360
Hectar predicted targeting categoryother localisation
Exons2
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789984.6464822-UTR-C-tenellus_contig6683:1776..18341680789984.6464822-UTR-C-tenellus_contig6683:1776..1834Choristocarpus tenellus KU2346UTRC-tenellus_contig6683 1777..1834 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789984.6583772-CDS-C-tenellus_contig6683:1834..20781680789984.6583772-CDS-C-tenellus_contig6683:1834..2078Choristocarpus tenellus KU2346CDSC-tenellus_contig6683 1835..2078 +
1680789984.672737-CDS-C-tenellus_contig6683:2168..22241680789984.672737-CDS-C-tenellus_contig6683:2168..2224Choristocarpus tenellus KU2346CDSC-tenellus_contig6683 2169..2224 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6683.2.1prot_C-tenellus_contig6683.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6683 1835..2224 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6683.2.1

>prot_C-tenellus_contig6683.2.1 ID=prot_C-tenellus_contig6683.2.1|Name=mRNA_C-tenellus_contig6683.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=100bp
MLRSMRGRGWFHVVDPTSILPCNLSPHLTLHTICKNFFADGSYFLRNLGL
SLLGFYILLRLPRSSIATVLYYEGPEPLNTSGRGILERLLEHLKRKFEEA
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mRNA from alignment at C-tenellus_contig6683:1777..2224+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6683.2.1 ID=mRNA_C-tenellus_contig6683.2.1|Name=mRNA_C-tenellus_contig6683.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=448bp|location=Sequence derived from alignment at C-tenellus_contig6683:1777..2224+ (Choristocarpus tenellus KU2346)
ATATTGAGAAAGATCGGGAGATGGATTCATACAGAAGCCTGGGAAGGCTT
CGGGGGGAATGCTCAGGTCTATGAGAGGACGAGGTTGGTTTCATGTTGTT
GACCCTACATCCATTTTGCCTTGCAATCTTTCCCCACACCTCACCCTTCA
TACAATTTGCAAGAATTTTTTCGCTGATGGATCATACTTCCTACGAAATC
TGGGACTATCGCTATTGGGCTTCTATATCCTGCTAAGGCTGCCTAGAAGT
TCCATAGCTACTGTGCTGTACTATGAGGGGCCTGAACCTCTCAACACATC
AGGTATCTATCTACTCCCTACATACCTTACGATTTTTGAGAAGATTCGTA
AAGTAAGTTGCATGAGGTAACACCAGTGATTTCCACCAACAGGCCGGGGT
ATCCTCGAGAGGCTCTTAGAGCACTTGAAGAGGAAATTCGAAGAAGCC
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Coding sequence (CDS) from alignment at C-tenellus_contig6683:1777..2224+

>mRNA_C-tenellus_contig6683.2.1 ID=mRNA_C-tenellus_contig6683.2.1|Name=mRNA_C-tenellus_contig6683.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=300bp|location=Sequence derived from alignment at C-tenellus_contig6683:1777..2224+ (Choristocarpus tenellus KU2346)
ATGCTCAGGTCTATGAGAGGACGAGGTTGGTTTCATGTTGTTGACCCTAC
ATCCATTTTGCCTTGCAATCTTTCCCCACACCTCACCCTTCATACAATTT
GCAAGAATTTTTTCGCTGATGGATCATACTTCCTACGAAATCTGGGACTA
TCGCTATTGGGCTTCTATATCCTGCTAAGGCTGCCTAGAAGTTCCATAGC
TACTGTGCTGTACTATGAGGGGCCTGAACCTCTCAACACATCAGGCCGGG
GTATCCTCGAGAGGCTCTTAGAGCACTTGAAGAGGAAATTCGAAGAAGCC
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