mRNA_C-tenellus_contig11807.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11807.1.1
Unique NamemRNA_C-tenellus_contig11807.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11807.1.1 vs. uniprot
Match: A0A6H5JL12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL12_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 5.130e-8
Identity = 41/111 (36.94%), Postives = 59/111 (53.15%), Query Frame = 2 
Query:  242 QLQLTSLGICRECRETTGAHVWVAKQTPPWLW---------ENQEPDSGRL---PRVPPVRVHRLTWELPQLSPRMKVMISMG-AEGWLSDLQELTFGRDFNDKLDGLVWP 535
            +LQL S+ + + CR   G H  +A+ TP  LW           Q   SG L   PR+PP R+  +TWE        K +  +G A+  LS+L+ L +GR FN++LD +VWP
Sbjct:   60 ELQLVSVWLSQTCRTVAGCHARIARGTPRRLWCPLSTRRITRGQRRRSGSLDGSPRLPPRRLTSVTWE--------KTIRELGQAQEVLSELENLEWGRMFNERLDAVVWP 162
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11807.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JL12_9PHAE5.130e-836.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11807contigC-tenellus_contig11807:1106..2761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1656
Hectar predicted targeting categoryother localisation
Exons1
Cds size996
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789196.03178-UTR-C-tenellus_contig11807:1105..15991680789196.03178-UTR-C-tenellus_contig11807:1105..1599Choristocarpus tenellus KU2346UTRC-tenellus_contig11807 1106..1599 -
1680789196.0566373-UTR-C-tenellus_contig11807:2595..27611680789196.0566373-UTR-C-tenellus_contig11807:2595..2761Choristocarpus tenellus KU2346UTRC-tenellus_contig11807 2596..2761 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789196.044585-CDS-C-tenellus_contig11807:1599..25951680789196.044585-CDS-C-tenellus_contig11807:1599..2595Choristocarpus tenellus KU2346CDSC-tenellus_contig11807 1600..2595 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11807.1.1prot_C-tenellus_contig11807.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11807 1600..2595 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11807.1.1

>prot_C-tenellus_contig11807.1.1 ID=prot_C-tenellus_contig11807.1.1|Name=mRNA_C-tenellus_contig11807.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=332bp
MVDYQLLNVFGLVRSWGWLQTTNINQLQLTSLGICRECRETTGAHVWVAK
QTPPWLWENQEPDSGRLPRVPPVRVHRLTWELPQLSPRMKVMISMGAEGW
LSDLQELTFGRDFNDKLDGLVWPRRLQQLSFGSQFNQAIEGIKWPVDLRH
LSFGKRFDQPMDRMEWPAGLRNLVFGENFNQALDRIRWPSALKRLTFGKY
FNQSINGIILPRGLEHLTFGSRYDQPVEKVVWPTELRHLTFGEFFNQAVD
YVRWPAGLEKITFGNFFNQSIDGVKWPVNLQQLKIGDGFKHDVDGMVWPA
DFKLLIIGCCINEAVDGMLWPAGIDICNEFY*
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mRNA from alignment at C-tenellus_contig11807:1106..2761-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11807.1.1 ID=mRNA_C-tenellus_contig11807.1.1|Name=mRNA_C-tenellus_contig11807.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1656bp|location=Sequence derived from alignment at C-tenellus_contig11807:1106..2761- (Choristocarpus tenellus KU2346)
CATTGTTCTCACAATTCATCAACGACAATTCACCGTGTTCATTCCTTGTT
GGGAAGCTTGAAAGTGACGTGATTCATGAAGATGACACACACAACAACAG
GAGCAGGAACATCTCGTACCCACTTCTACTGTTGTCTTTCCATTTCCCAG
TATCTGCACCAGGCTAATGGTGGACTATCAGCTTTTGAATGTGTTCGGGC
TGGTCAGGAGTTGGGGATGGCTTCAGACCACAAACATCAATCAGCTTCAA
CTAACGAGCTTGGGTATTTGTCGTGAGTGTCGAGAGACGACAGGAGCCCA
TGTTTGGGTGGCAAAACAAACACCACCTTGGTTATGGGAGAACCAAGAGC
CAGATAGTGGGAGGTTACCACGAGTACCTCCTGTTCGTGTCCATCGTCTC
ACTTGGGAACTCCCACAGTTGTCCCCTAGGATGAAGGTTATGATATCAAT
GGGCGCTGAGGGATGGCTGTCAGATCTCCAAGAGTTGACTTTTGGAAGAG
ACTTCAACGATAAGTTGGATGGGCTAGTATGGCCCCGTAGACTCCAGCAG
CTGTCCTTCGGATCTCAATTTAACCAGGCTATAGAGGGGATTAAGTGGCC
AGTAGACCTACGACATTTATCGTTTGGGAAGCGCTTCGACCAACCGATGG
ACCGCATGGAGTGGCCAGCAGGGCTTCGAAATTTAGTATTTGGAGAAAAC
TTCAACCAGGCCCTGGACAGGATACGATGGCCATCGGCGCTCAAGCGACT
TACCTTTGGCAAGTACTTCAACCAATCGATCAATGGGATAATCTTACCAA
GGGGACTCGAGCATCTGACCTTCGGATCTCGCTATGACCAGCCTGTGGAA
AAGGTGGTTTGGCCAACGGAGCTTAGACACCTTACTTTCGGGGAGTTCTT
TAATCAGGCAGTTGATTATGTGAGGTGGCCTGCAGGGCTTGAGAAGATTA
CGTTCGGAAACTTCTTCAACCAGAGCATTGATGGAGTAAAGTGGCCAGTC
AACCTGCAGCAGCTGAAAATCGGAGATGGCTTCAAACACGATGTGGACGG
AATGGTGTGGCCTGCCGATTTCAAACTGTTGATCATCGGGTGCTGTATCA
ATGAGGCTGTGGATGGAATGTTGTGGCCGGCAGGAATTGATATTTGCAAT
GAATTTTATTGACATGAGTATGGAGTTCGGTCGTTAGTTGTAGACAGTAT
TTTATCATAGTTGTGTTTATTATGTATTGGTCGTCTAATTGTGTGTGAAC
GTGGACGAGGCAGTGGGTGGACATTCGCAACTTAGTACCAGACTCGAGGG
ATACGCATTTGTACATAGAGCACGATTGAGACGAGTTGCTAGTGTTAGTA
TGTAAGGTATTCAGCATGTACTCTGCAGTACTTGAATTAGGAAATGTGTG
GTCTTTGTTTTTCTTCGTCTTCTTACTTTTTCACAACAACAGTTATTTAT
GTTGTCAAGTTTCAATACTCGAGAGTATTTTTTTTCAACGTTTGGTTGAT
TGCCTTGCGGGTTTGGCTCGCAAATGTCCATAGCTTATAGTCATTGTTGT
CACTTTTAGTTGAGGAGGGAGTAGCGTACAGAACACGTTTCATTGGAGAT
GCAGCTGTTTGAATTGATTCATCGAAGAACATACAAGTGTAATATTTTTT
CTTGTG
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Coding sequence (CDS) from alignment at C-tenellus_contig11807:1106..2761-

>mRNA_C-tenellus_contig11807.1.1 ID=mRNA_C-tenellus_contig11807.1.1|Name=mRNA_C-tenellus_contig11807.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=996bp|location=Sequence derived from alignment at C-tenellus_contig11807:1106..2761- (Choristocarpus tenellus KU2346)
ATGGTGGACTATCAGCTTTTGAATGTGTTCGGGCTGGTCAGGAGTTGGGG
ATGGCTTCAGACCACAAACATCAATCAGCTTCAACTAACGAGCTTGGGTA
TTTGTCGTGAGTGTCGAGAGACGACAGGAGCCCATGTTTGGGTGGCAAAA
CAAACACCACCTTGGTTATGGGAGAACCAAGAGCCAGATAGTGGGAGGTT
ACCACGAGTACCTCCTGTTCGTGTCCATCGTCTCACTTGGGAACTCCCAC
AGTTGTCCCCTAGGATGAAGGTTATGATATCAATGGGCGCTGAGGGATGG
CTGTCAGATCTCCAAGAGTTGACTTTTGGAAGAGACTTCAACGATAAGTT
GGATGGGCTAGTATGGCCCCGTAGACTCCAGCAGCTGTCCTTCGGATCTC
AATTTAACCAGGCTATAGAGGGGATTAAGTGGCCAGTAGACCTACGACAT
TTATCGTTTGGGAAGCGCTTCGACCAACCGATGGACCGCATGGAGTGGCC
AGCAGGGCTTCGAAATTTAGTATTTGGAGAAAACTTCAACCAGGCCCTGG
ACAGGATACGATGGCCATCGGCGCTCAAGCGACTTACCTTTGGCAAGTAC
TTCAACCAATCGATCAATGGGATAATCTTACCAAGGGGACTCGAGCATCT
GACCTTCGGATCTCGCTATGACCAGCCTGTGGAAAAGGTGGTTTGGCCAA
CGGAGCTTAGACACCTTACTTTCGGGGAGTTCTTTAATCAGGCAGTTGAT
TATGTGAGGTGGCCTGCAGGGCTTGAGAAGATTACGTTCGGAAACTTCTT
CAACCAGAGCATTGATGGAGTAAAGTGGCCAGTCAACCTGCAGCAGCTGA
AAATCGGAGATGGCTTCAAACACGATGTGGACGGAATGGTGTGGCCTGCC
GATTTCAAACTGTTGATCATCGGGTGCTGTATCAATGAGGCTGTGGATGG
AATGTTGTGGCCGGCAGGAATTGATATTTGCAATGAATTTTATTGA
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