mRNA_C-tenellus_contig11806.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11806.1.1
Unique NamemRNA_C-tenellus_contig11806.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11806.1.1 vs. uniprot
Match: D7G435_ECTSI (Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G435_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.590e-19
Identity = 69/196 (35.20%), Postives = 106/196 (54.08%), Query Frame = 1
Query:    1 ALVHHIWNNFQPWVIDDIQMLVDTLPTGV-RQGPFIGLHIRRGDKLI--REAKLIETKVYLEEAFAYLNKSVYSHAGNLPAECSGRRTPLPA-EVLGIHVASDDLNVVEEVKELAPKFFESVV--DIVYISAGTGEFEKKMNIPTQGYIQTYWSTVYLLVDMQQLVNANLFVGIFLSSIGRMVYLLRSQNAAIGVE 570
            A+  ++W+N  PW+  D+  +    P+ V ++ PF+GLHIRRGDK+   R A +   K YLE A  +L                G  + L   ++ GI VASD+  V+ +VK++AP +  +V   DI + S G     +     T+   +TY   VY L D+QQL  A+LFVG F S++GR++ LLR    +IG++
Sbjct:  252 AMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVTHGRRASMYLCKEYLEAAVEFLE---------------GDDSQLSVGDIKGIWVASDEPKVIAKVKQIAPDYLPNVSEDDIFWASGGVEGGPEIGRTATRTDKETYADFVYTLADLQQLTAADLFVGTFSSNMGRLLVLLRE---SIGLK 429          
BLAST of mRNA_C-tenellus_contig11806.1.1 vs. uniprot
Match: A0A6H5JTL0_9PHAE (GT23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL0_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.640e-18
Identity = 68/194 (35.05%), Postives = 105/194 (54.12%), Query Frame = 1
Query:    1 ALVHHIWNNFQPWVIDDIQMLVDTLPTGV-RQGPFIGLHIRRGDKLIR-EAKLIETKVYLEEAFAYLNKSVYSHAGNLPAECSGRRTPLPAEVLGIHVASDDLNVVEEVKELAPKFFESVV--DIVYISAGTGEFEKKMNIPTQGYIQTYWSTVYLLVDMQQLVNANLFVGIFLSSIGRMVYLLRSQNAAIGVE 570
            A+  ++W+N  PW+  D+  +    P+ V ++ PF+GLHIRRGDK+ + EA +   + YLE A  +L        GN      G       ++ GI VASD+  V+ +VK++A  +  +V   DI + S G     +     T+   +TY   VY   D+QQL  A+LFVG F S+IGR++ LLR    +IG++
Sbjct:  245 AMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVSQGEASMYLCEEYLETAVEFLE-------GNDSQLSVG-------DIKGIWVASDEPKVIAKVKQIAQDYLPNVSEGDIFWASGGVEGGPEIERTATRTDQETYADFVYTFADLQQLTAADLFVGTFSSNIGRLLVLLRE---SIGLK 421          
BLAST of mRNA_C-tenellus_contig11806.1.1 vs. uniprot
Match: A0A6H5LR29_9PHAE (GT23 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LR29_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 2.640e-17
Identity = 61/180 (33.89%), Postives = 96/180 (53.33%), Query Frame = 1
Query:   16 IWNNFQPWVIDDIQMLVDTLPTGV-RQGPFIGLHIRRGDKLIR-EAKLIETKVYLEEAFAYLNKSVYSHAGNLPAECSGRRTPLPAEVLGIHVASDDLNVVEEVKELAPKFFESVVD--IVYISAGTGEFEKKMNIPTQGYIQTYWSTVYLLVDMQQLVNANLFVGIFLSSIGRMVYLLR 543
            +W N  PW+ +D++  ++     V R+ PF+GLH+RRGDK+   EA+ +ETK YL  A  + +        ++ A               I VASDD  VVEEV+ +A ++F +V+D  IV++S G        +  +QGY       V +  D++ L   +LFVG + S++ R+V LLR
Sbjct:  109 LWKNLTPWLQEDVRKALERPDLDVFRRKPFVGLHVRRGDKVGEGEAQKVETKEYLSAAARFFDNKASQDKQDIEA---------------IWVASDDHKVVEEVRAIARQYFPNVLDEDIVWVSGGARGGAVTTHTKSQGY----QGFVMVFADLKMLAAGSLFVGTYTSNVSRLVALLR 269          
BLAST of mRNA_C-tenellus_contig11806.1.1 vs. uniprot
Match: A0A820EEG8_9BILA (Hypothetical protein n=5 Tax=Rotaria TaxID=231623 RepID=A0A820EEG8_9BILA)

HSP 1 Score: 60.5 bits (145), Expect = 2.250e-6
Identity = 46/168 (27.38%), Postives = 80/168 (47.62%), Query Frame = 1
Query:  100 FIGLHIRRGDKLIREAKLIETKVYLEEAFAYLNKSVYSHAGNLPAECSGRRTPLPAEVLGIHVASDDLNVVEEVKELAP--KFFESVVDIVYISAGTGEFEKKMNIPTQGYIQTYWSTVYLLVDMQQLVNANLFVGIFLSSIGRMVYLLRSQNAAIGVEPNFREWRPT 597
            +IG+HIR+GDKL  EA  I  + +++      NK+                      +  I VASDDL V+++ + L P   FF+   +    +  TG F+ K N     + +  + T  L+ ++Q L+N+   +    S++ R++ +LR Q+ A  +  + R W PT
Sbjct:  194 YIGIHIRKGDKLKSEAPSISLEKHIKSIENIFNKT--------------------KTIQNIFVASDDLTVIKQFRHLKPIWNFFQINYNNYQHTNRTGHFQSKFN--RLSFERKLFETRLLMCELQMLLNSQYVLCSMYSNMCRLLKILRYQHPATTISLD-RSWYPT 338          
BLAST of mRNA_C-tenellus_contig11806.1.1 vs. uniprot
Match: UPI00054FC0E2 (hypothetical protein n=1 Tax=Dokdonia sp. PRO95 TaxID=1239415 RepID=UPI00054FC0E2)

HSP 1 Score: 59.7 bits (143), Expect = 3.320e-6
Identity = 49/153 (32.03%), Postives = 77/153 (50.33%), Query Frame = 1
Query:  100 FIGLHIRRGDKLIREAKLIETKVYLEEAFAYLNKSVYSHAGNLPAECSGRRTPLPAEVLGIHVASDDLNVVEEVKELAPKFFESVVDIVYIS----AGTGEFEKKMNIPTQGYIQTYWSTVYLLVDMQQLVNANLFVGIFLSSIGRMVYLLRS 546
            F G+H+RRGDKLIREA L   K YLE+     N+  +                   ++  + VASD+  V+EE++      + S ++  YIS    +  G  +K  N  T   I++    + LL++++ L     FVG F S+IGR+V+L R+
Sbjct:  173 FSGIHVRRGDKLIREAGLFIVKCYLEKG----NEKGF-------------------DMHDLFVASDNFQVLEELEN-----YNSYIE--YISYCEPSDNGHHQKSFNNQTMSNIES--QVLRLLIEIEILSLTKCFVGTFSSNIGRLVHLKRN 293          
BLAST of mRNA_C-tenellus_contig11806.1.1 vs. uniprot
Match: D8LU01_ECTSI (GT23 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU01_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.960e-5
Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = 1
Query:    4 LVHHIWNNFQPWVIDDIQMLVDTLPTG-VRQGPFIGLHIRRGDKLIREAKLIETKVYLEEAFAYLNKSVYSHAGNLPAECSGRRTPLPAEVLGIHVASDDLNVVEEV 321
            LV H+ +  QPW   DIQ ++D      +R G ++G+HIRR DK   E KL +T+VY  +   YL  S     G L A          A++ G+ +++D+++V  EV
Sbjct:  138 LVDHLHSYLQPWFKADIQRILDEPDIAEMRNGKYVGMHIRRTDKA-NETKLTKTEVYFRKVAQYLRSS----PGGLRA----------ADITGLWLSTDEVSVFNEV 229          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11806.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G435_ECTSI1.590e-1935.20Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Ta... [more]
A0A6H5JTL0_9PHAE1.640e-1835.05GT23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5LR29_9PHAE2.640e-1733.89GT23 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
A0A820EEG8_9BILA2.250e-627.38Hypothetical protein n=5 Tax=Rotaria TaxID=231623 ... [more]
UPI00054FC0E23.320e-632.03hypothetical protein n=1 Tax=Dokdonia sp. PRO95 Ta... [more]
D8LU01_ECTSI1.960e-534.58GT23 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11806contigC-tenellus_contig11806:3398..5020 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G435
Model size1355
Max annot lvl2759|Eukaryota
KEGG koko:K00717
KEGG ReactionR05988,R09319
KEGG Pathwayko00510,ko00513,ko00533,ko01100,ko05202,map00510,map00513,map00533,map01100,map05202
KEGG ModuleM00075
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.66e-16
EggNOG OGsKOG3705@1|root,KOG3705@2759|Eukaryota
EC2.4.1.68
Descriptionglycoprotein 6-alpha-L-fucosyltransferase activity
Cds size546
COG categoryM
CAZyGT23
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789195.9594338-UTR-C-tenellus_contig11806:3397..41491680789195.9594338-UTR-C-tenellus_contig11806:3397..4149Choristocarpus tenellus KU2346UTRC-tenellus_contig11806 3398..4149 -
1680789195.994524-UTR-C-tenellus_contig11806:4963..50201680789195.994524-UTR-C-tenellus_contig11806:4963..5020Choristocarpus tenellus KU2346UTRC-tenellus_contig11806 4964..5020 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789195.9722662-CDS-C-tenellus_contig11806:4149..43201680789195.9722662-CDS-C-tenellus_contig11806:4149..4320Choristocarpus tenellus KU2346CDSC-tenellus_contig11806 4150..4320 -
1680789195.9838622-CDS-C-tenellus_contig11806:4588..49631680789195.9838622-CDS-C-tenellus_contig11806:4588..4963Choristocarpus tenellus KU2346CDSC-tenellus_contig11806 4589..4963 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11806.1.1prot_C-tenellus_contig11806.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11806 4150..4963 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11806.1.1

>prot_C-tenellus_contig11806.1.1 ID=prot_C-tenellus_contig11806.1.1|Name=mRNA_C-tenellus_contig11806.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=182bp
MLVDTLPTGVRQGPFIGLHIRRGDKLIREAKLIETKVYLEEAFAYLNKSV
YSHAGNLPAECSGRRTPLPAEVLGIHVASDDLNVVEEVKELAPKFFESVV
DIVYISAGTGEFEKKMNIPTQGYIQTYWSTVYLLVDMQQLVNANLFVGIF
LSSIGRMVYLLRSQNAAIGVEPNFREWRPTH*
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mRNA from alignment at C-tenellus_contig11806:3398..5020-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11806.1.1 ID=mRNA_C-tenellus_contig11806.1.1|Name=mRNA_C-tenellus_contig11806.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1623bp|location=Sequence derived from alignment at C-tenellus_contig11806:3398..5020- (Choristocarpus tenellus KU2346)
GCTTTGGTTCATCACATCTGGAACAATTTTCAACCTTGGGTAATAGATGA TATACAGATGCTTGTGGACACCTTGCCTACTGGCGTACGCCAAGGTCCAT TCATTGGTTTGCACATCAGACGTGGGGACAAGCTAATTCGTGAAGCGAAA CTGATTGAGACCAAGGTGTACCTGGAAGAGGCATTTGCGTATCTCAATAA ATCTGTTTATAGTCATGCGGGCAATCTTCCTGCAGAATGCAGCGGAAGAC GGACTCCATTGCCTGCAGAAGTTCTAGGCATACATGTAGCCTCAGACGAC CTGAATGTGGTGGAAGAAGTCAAGGAGCTGGCCCCGAAATTCTTTGAATC TGTTGTAGATATTGTCTACATATCGGCAGGGACTGGAGAATTCGAGAAAA AAATGAACATTCCTACACAGGGTTATATTCAGGTGCGGTTGAAGTAGCAG AGTAGACCCATATTGGGCACTGTAGGACCAACTCTGTTTATTAACTAGCT TAAACAAGGCAGGTAGGTGCTGCTGGGCCTTTTACACCTTTATCTGTATG AGAGATTCAGCCCAGGGGTTGTTTGTTCACTACTCCCATCCATACACATG ACTTCTGCTTGTCTGAATTTGTAGGCTTGTGCTCTTGGATCAGTGTTAAC CTTAGTTCCGGTGCTGTATCCAAATCTAACTTCTACCTCAAAAACTGCAG ACCTACTGGAGCACTGTGTACCTCCTTGTTGATATGCAGCAGCTGGTCAA TGCAAATTTGTTTGTGGGAATTTTTTTGAGCAGCATAGGCAGGATGGTCT ATCTTTTGAGGTCACAGAATGCAGCTATTGGAGTCGAGCCCAACTTTAGA GAATGGAGACCCACTCATTGATACCAGCCTAATGGTGGTAAGTAGAGCAG TTTCAAGTTCGATCCATTTCTGAAAGAATGAAAAAAATCGAATTGTGTAC GAGGCAACAAGACCATAACAAGAGTGCAAACCACTACAAGGGAATATTTT GATCCGTGTAGAGTCTAACGCTAACACCTTCATGGACTAAGTTGTTAGTC TTGGCACGAGGGGAAATTTCCGGATGAGGAAGCGATTTTGTGATGGTTAG TAGGTGTTTAGGGTTAGGGTTAGAGTTTGGTGGCAAGGGGGTTCAGAAGT AAGGGAGCAACGAAGGCATACCTATGACATGACTTGTCTGCAACTGCAAA AGGTAGCTCTATAAATTATTGACGAAGACCGTACGGTGAAGACGATTATC TGGTGGGCAAGGCTGGACTTGGCGAAAGAGGCTTATTGAACGTCCCATTA CTGTGTGATGGAAACCAATTTTGACCTGAGGGGAGTGAGATCTCGCGCTT GTGTGCGACATGAAGATTGGAACAATTAGGGTATTTTTCTGGGTGCCCTT TCAGTTAGACTTCTTGTTTGTCTGGCAGTTGGTTTTGTCTTACCCGGTAT GTAATTTTTCATAGTCGAGTTTCAACATATTGATAGAAGAGTGGCTGTGG TTGGTGTAGGCAGAGTGTCTTCTTCATAAAATCTATTTCATGTATTCGAA TGGTAATGGATCAACCATGTCATAGAGGAGACTTCATTTTAGGAGTTATT CTATTATCACCAACTAGTTGAAT
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Coding sequence (CDS) from alignment at C-tenellus_contig11806:3398..5020-

>mRNA_C-tenellus_contig11806.1.1 ID=mRNA_C-tenellus_contig11806.1.1|Name=mRNA_C-tenellus_contig11806.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=546bp|location=Sequence derived from alignment at C-tenellus_contig11806:3398..5020- (Choristocarpus tenellus KU2346)
ATGCTTGTGGACACCTTGCCTACTGGCGTACGCCAAGGTCCATTCATTGG
TTTGCACATCAGACGTGGGGACAAGCTAATTCGTGAAGCGAAACTGATTG
AGACCAAGGTGTACCTGGAAGAGGCATTTGCGTATCTCAATAAATCTGTT
TATAGTCATGCGGGCAATCTTCCTGCAGAATGCAGCGGAAGACGGACTCC
ATTGCCTGCAGAAGTTCTAGGCATACATGTAGCCTCAGACGACCTGAATG
TGGTGGAAGAAGTCAAGGAGCTGGCCCCGAAATTCTTTGAATCTGTTGTA
GATATTGTCTACATATCGGCAGGGACTGGAGAATTCGAGAAAAAAATGAA
CATTCCTACACAGGGTTATATTCAGACCTACTGGAGCACTGTGTACCTCC
TTGTTGATATGCAGCAGCTGGTCAATGCAAATTTGTTTGTGGGAATTTTT
TTGAGCAGCATAGGCAGGATGGTCTATCTTTTGAGGTCACAGAATGCAGC
TATTGGAGTCGAGCCCAACTTTAGAGAATGGAGACCCACTCATTGA
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