mRNA_C-tenellus_contig11806.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig11806.1.1 vs. uniprot
Match: D7G435_ECTSI (Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G435_ECTSI) HSP 1 Score: 101 bits (251), Expect = 1.590e-19 Identity = 69/196 (35.20%), Postives = 106/196 (54.08%), Query Frame = 1 Query: 1 ALVHHIWNNFQPWVIDDIQMLVDTLPTGV-RQGPFIGLHIRRGDKLI--REAKLIETKVYLEEAFAYLNKSVYSHAGNLPAECSGRRTPLPA-EVLGIHVASDDLNVVEEVKELAPKFFESVV--DIVYISAGTGEFEKKMNIPTQGYIQTYWSTVYLLVDMQQLVNANLFVGIFLSSIGRMVYLLRSQNAAIGVE 570 A+ ++W+N PW+ D+ + P+ V ++ PF+GLHIRRGDK+ R A + K YLE A +L G + L ++ GI VASD+ V+ +VK++AP + +V DI + S G + T+ +TY VY L D+QQL A+LFVG F S++GR++ LLR +IG++ Sbjct: 252 AMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVTHGRRASMYLCKEYLEAAVEFLE---------------GDDSQLSVGDIKGIWVASDEPKVIAKVKQIAPDYLPNVSEDDIFWASGGVEGGPEIGRTATRTDKETYADFVYTLADLQQLTAADLFVGTFSSNMGRLLVLLRE---SIGLK 429
BLAST of mRNA_C-tenellus_contig11806.1.1 vs. uniprot
Match: A0A6H5JTL0_9PHAE (GT23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL0_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 1.640e-18 Identity = 68/194 (35.05%), Postives = 105/194 (54.12%), Query Frame = 1 Query: 1 ALVHHIWNNFQPWVIDDIQMLVDTLPTGV-RQGPFIGLHIRRGDKLIR-EAKLIETKVYLEEAFAYLNKSVYSHAGNLPAECSGRRTPLPAEVLGIHVASDDLNVVEEVKELAPKFFESVV--DIVYISAGTGEFEKKMNIPTQGYIQTYWSTVYLLVDMQQLVNANLFVGIFLSSIGRMVYLLRSQNAAIGVE 570 A+ ++W+N PW+ D+ + P+ V ++ PF+GLHIRRGDK+ + EA + + YLE A +L GN G ++ GI VASD+ V+ +VK++A + +V DI + S G + T+ +TY VY D+QQL A+LFVG F S+IGR++ LLR +IG++ Sbjct: 245 AMAKYLWSNVTPWLQADVDFVTRASPSDVFQESPFLGLHIRRGDKVSQGEASMYLCEEYLETAVEFLE-------GNDSQLSVG-------DIKGIWVASDEPKVIAKVKQIAQDYLPNVSEGDIFWASGGVEGGPEIERTATRTDQETYADFVYTFADLQQLTAADLFVGTFSSNIGRLLVLLRE---SIGLK 421
BLAST of mRNA_C-tenellus_contig11806.1.1 vs. uniprot
Match: A0A6H5LR29_9PHAE (GT23 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LR29_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 2.640e-17 Identity = 61/180 (33.89%), Postives = 96/180 (53.33%), Query Frame = 1 Query: 16 IWNNFQPWVIDDIQMLVDTLPTGV-RQGPFIGLHIRRGDKLIR-EAKLIETKVYLEEAFAYLNKSVYSHAGNLPAECSGRRTPLPAEVLGIHVASDDLNVVEEVKELAPKFFESVVD--IVYISAGTGEFEKKMNIPTQGYIQTYWSTVYLLVDMQQLVNANLFVGIFLSSIGRMVYLLR 543 +W N PW+ +D++ ++ V R+ PF+GLH+RRGDK+ EA+ +ETK YL A + + ++ A I VASDD VVEEV+ +A ++F +V+D IV++S G + +QGY V + D++ L +LFVG + S++ R+V LLR Sbjct: 109 LWKNLTPWLQEDVRKALERPDLDVFRRKPFVGLHVRRGDKVGEGEAQKVETKEYLSAAARFFDNKASQDKQDIEA---------------IWVASDDHKVVEEVRAIARQYFPNVLDEDIVWVSGGARGGAVTTHTKSQGY----QGFVMVFADLKMLAAGSLFVGTYTSNVSRLVALLR 269
BLAST of mRNA_C-tenellus_contig11806.1.1 vs. uniprot
Match: A0A820EEG8_9BILA (Hypothetical protein n=5 Tax=Rotaria TaxID=231623 RepID=A0A820EEG8_9BILA) HSP 1 Score: 60.5 bits (145), Expect = 2.250e-6 Identity = 46/168 (27.38%), Postives = 80/168 (47.62%), Query Frame = 1 Query: 100 FIGLHIRRGDKLIREAKLIETKVYLEEAFAYLNKSVYSHAGNLPAECSGRRTPLPAEVLGIHVASDDLNVVEEVKELAP--KFFESVVDIVYISAGTGEFEKKMNIPTQGYIQTYWSTVYLLVDMQQLVNANLFVGIFLSSIGRMVYLLRSQNAAIGVEPNFREWRPT 597 +IG+HIR+GDKL EA I + +++ NK+ + I VASDDL V+++ + L P FF+ + + TG F+ K N + + + T L+ ++Q L+N+ + S++ R++ +LR Q+ A + + R W PT Sbjct: 194 YIGIHIRKGDKLKSEAPSISLEKHIKSIENIFNKT--------------------KTIQNIFVASDDLTVIKQFRHLKPIWNFFQINYNNYQHTNRTGHFQSKFN--RLSFERKLFETRLLMCELQMLLNSQYVLCSMYSNMCRLLKILRYQHPATTISLD-RSWYPT 338
BLAST of mRNA_C-tenellus_contig11806.1.1 vs. uniprot
Match: UPI00054FC0E2 (hypothetical protein n=1 Tax=Dokdonia sp. PRO95 TaxID=1239415 RepID=UPI00054FC0E2) HSP 1 Score: 59.7 bits (143), Expect = 3.320e-6 Identity = 49/153 (32.03%), Postives = 77/153 (50.33%), Query Frame = 1 Query: 100 FIGLHIRRGDKLIREAKLIETKVYLEEAFAYLNKSVYSHAGNLPAECSGRRTPLPAEVLGIHVASDDLNVVEEVKELAPKFFESVVDIVYIS----AGTGEFEKKMNIPTQGYIQTYWSTVYLLVDMQQLVNANLFVGIFLSSIGRMVYLLRS 546 F G+H+RRGDKLIREA L K YLE+ N+ + ++ + VASD+ V+EE++ + S ++ YIS + G +K N T I++ + LL++++ L FVG F S+IGR+V+L R+ Sbjct: 173 FSGIHVRRGDKLIREAGLFIVKCYLEKG----NEKGF-------------------DMHDLFVASDNFQVLEELEN-----YNSYIE--YISYCEPSDNGHHQKSFNNQTMSNIES--QVLRLLIEIEILSLTKCFVGTFSSNIGRLVHLKRN 293
BLAST of mRNA_C-tenellus_contig11806.1.1 vs. uniprot
Match: D8LU01_ECTSI (GT23 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU01_ECTSI) HSP 1 Score: 56.6 bits (135), Expect = 1.960e-5 Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = 1 Query: 4 LVHHIWNNFQPWVIDDIQMLVDTLPTG-VRQGPFIGLHIRRGDKLIREAKLIETKVYLEEAFAYLNKSVYSHAGNLPAECSGRRTPLPAEVLGIHVASDDLNVVEEV 321 LV H+ + QPW DIQ ++D +R G ++G+HIRR DK E KL +T+VY + YL S G L A A++ G+ +++D+++V EV Sbjct: 138 LVDHLHSYLQPWFKADIQRILDEPDIAEMRNGKYVGMHIRRTDKA-NETKLTKTEVYFRKVAQYLRSS----PGGLRA----------ADITGLWLSTDEVSVFNEV 229 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11806.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig11806.1.1 >prot_C-tenellus_contig11806.1.1 ID=prot_C-tenellus_contig11806.1.1|Name=mRNA_C-tenellus_contig11806.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=182bp MLVDTLPTGVRQGPFIGLHIRRGDKLIREAKLIETKVYLEEAFAYLNKSVback to top mRNA from alignment at C-tenellus_contig11806:3398..5020- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig11806.1.1 ID=mRNA_C-tenellus_contig11806.1.1|Name=mRNA_C-tenellus_contig11806.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1623bp|location=Sequence derived from alignment at C-tenellus_contig11806:3398..5020- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig11806:3398..5020- >mRNA_C-tenellus_contig11806.1.1 ID=mRNA_C-tenellus_contig11806.1.1|Name=mRNA_C-tenellus_contig11806.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=546bp|location=Sequence derived from alignment at C-tenellus_contig11806:3398..5020- (Choristocarpus tenellus KU2346)back to top |