|
Homology
BLAST of mRNA_C-tenellus_contig11792.1.1 vs. uniprot
Match: D7FMD2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMD2_ECTSI) HSP 1 Score: 102 bits (255), Expect = 9.820e-22 Identity = 91/249 (36.55%), Postives = 140/249 (56.22%), Query Frame = 1
Query: 1 LAETESEAEPSRRLVGRLESEKASLVMEVDTLRQEVANWKKRVTSLTLSFNAVDPEEHKQVKAEKQQLV-------ETVSSMENKAAEAEKERKMLERDRDNYVREKQRLASKVQTC*QRSAALEKATKETAIRRLEAQLTSEKERLAKALAETATVRAELQRARSTNTATTAMA--ELREQVSKLSAEKAEMTADMD----------------KKSKELE----SKERENVTNRTMYENMKEVGRRMK 660
L++ ++ P +R + + ASL E ++LR+EV NWKKRVTSLT SFNAVDP++H+ V AEK++L +T +++EN A+ + + E++RD+ K ++ +V ++S + A K A R LEA+L +E+E+ E A++R E R R++ +TTA +L EQV+K AE + + KK LE +K+RENVTNRTMY+NMK V R++K
Sbjct: 154 LSQLRAQMAPLQRAQRQQSASSASLASEKESLRKEVENWKKRVTSLTASFNAVDPKDHEDVIAEKERLAKALAEADQTKAALENAKADLTRGKAAAEKERDDANAIKAKVLPQVHEL-RKSLSASAAQKAAASRDLEAKLAAEREKXXXXXXEAASLRQENARTRASANSTTANVTKQLNEQVAKAKAEGEALRVQLRQALASKDGSGQSEMLRKKVASLEEAIRAKDRENVTNRTMYDNMKGVSRKIK 401
BLAST of mRNA_C-tenellus_contig11792.1.1 vs. uniprot
Match: A0A6H5KRL3_9PHAE (TPR_MLP1_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRL3_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 6.860e-19 Identity = 91/253 (35.97%), Postives = 138/253 (54.55%), Query Frame = 1
Query: 1 LAETESEAEPSRRLVGRLESEKASLVMEVDTLRQEVANWKKRVTSLTLSFNAVDPEEHKQVKAEKQQLVETVSSMENKAAEAEKERKML-------ERDRDNYVREKQRLASKVQTC*QRSAALEKATKETAIRRLEAQLTSEKERLAKALAETATVRAELQRARSTNTATTAMA--ELREQ----VSKLSAEKAEMTADMD----------------KKSKELE----SKERENVTNRTMYENMKEVGRRMK 660
L++ ++ P +R + + ASL E ++LR+EV +WKKRVT+LT SFNAVDP++H+ V AEK++L + ++ E A E L E++RD+ K +L +V ++S + A K R LEA+L +E+E+ +KA AE A++R E R R++ + TA +L EQ V+K AE + + KK LE +K+RENVTNRTMY+NMK V R++K
Sbjct: 856 LSQLRAQMAPLQRAQRQQSASSASLASEKESLRKEVESWKKRVTNLTASFNAVDPKDHEDVIAEKERLAKALAEAEQAKAALENAXXXLTRGKAAAEKERDDANAIKAKLLPQVHEL-RKSLSASAAQKAATSRDLEAKLAAEREKASKAAAEAASLRQENARTRASANSNTANVTKQLNEQATLVVAKAKAEGEALRVQLRQALASKDGSGQSEMLRKKVASLEEAIQAKDRENVTNRTMYDNMKGVSRKIK 1107
BLAST of mRNA_C-tenellus_contig11792.1.1 vs. uniprot
Match: A0A448ZKX7_9STRA (TPR_MLP1_2 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZKX7_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 8.330e-8 Identity = 37/89 (41.57%), Postives = 57/89 (64.04%), Query Frame = 1
Query: 1 LAETESEAEPSRRLVGRLESEKASLVMEVDTLRQEVANWKKRVTSLTLSFNAVDPEEHKQVKAEKQQLVETVSSMENKAAEAEKERKML 267
+ E++ +PS +LES+KA L+ E D+L +E+ +WK RV SL FN VDPEEH +V + ++L + V S+E K + AE+E K +
Sbjct: 1309 VEESKKALQPSADKQKQLESDKAVLLAEKDSLLREIDDWKGRVQSLVSKFNQVDPEEHLKVVKKSEELEKQVKSLEEKKSYAEEESKRI 1397
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Stop | 1 |
Start | 1 |
Seed ortholog | 2880.D7FMD2 |
PFAMs | TPR_MLP1_2 |
Model size | 660 |
Max annot lvl | 2759|Eukaryota |
KEGG ko | ko:K09291,ko:K10405,ko:K12472,ko:K20283 |
KEGG TC | 1.I.1 |
KEGG Pathway | ko03013,ko04144,ko05200,ko05216,map03013,map04144,map05200,map05216 |
KEGG Module | M00427 |
Hectar predicted targeting category | other localisation |
GOs | GO:0000003,GO:0000075,GO:0000278,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005730,GO:0005737,GO:0005829,GO:0005911,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0007049,GO:0007088,GO:0007093,GO:0007094,GO:0007275,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009506,GO:0009507,GO:0009536,GO:0009791,GO:0009892,GO:0009908,GO:0009909,GO:0009910,GO:0009987,GO:0010467,GO:0010468,GO:0010564,GO:0010605,GO:0010639,GO:0010948,GO:0010965,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016973,GO:0019222,GO:0022402,GO:0022414,GO:0030054,GO:0030071,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031503,GO:0031577,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033233,GO:0033234,GO:0034613,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0046907,GO:0048367,GO:0048437,GO:0048438,GO:0048443,GO:0048466,GO:0048519,GO:0048523,GO:0048580,GO:0048581,GO:0048608,GO:0048731,GO:0048827,GO:0048831,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0051028,GO:0051093,GO:0051128,GO:0051129,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051236,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051641,GO:0051649,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0055044,GO:0060255,GO:0060968,GO:0061458,GO:0065007,GO:0070013,GO:0070727,GO:0071166,GO:0071173,GO:0071174,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0090567,GO:0099402,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903047,GO:1903320,GO:1903321,GO:1905818,GO:1905819,GO:2000026,GO:2000241,GO:2000242,GO:2000816,GO:2001251 |
Exons | 6 |
Evalue | 1.23e-10 |
EggNOG OGs | KOG4674@1|root,KOG4674@2759|Eukaryota |
Description | spindle assembly checkpoint |
Cds size | 255 |
COG category | S |
BRITE | ko00000,ko00001,ko00002,ko03019,ko03036,ko04131,ko04812 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1680789195.245633-UTR-C-tenellus_contig11792:244..385 | 1680789195.245633-UTR-C-tenellus_contig11792:244..385 | Choristocarpus tenellus KU2346 | UTR | C-tenellus_contig11792 245..385 - |
1680789195.2645056-UTR-C-tenellus_contig11792:696..789 | 1680789195.2645056-UTR-C-tenellus_contig11792:696..789 | Choristocarpus tenellus KU2346 | UTR | C-tenellus_contig11792 697..789 - |
1680789195.2723544-UTR-C-tenellus_contig11792:2162..2207 | 1680789195.2723544-UTR-C-tenellus_contig11792:2162..2207 | Choristocarpus tenellus KU2346 | UTR | C-tenellus_contig11792 2163..2207 - |
1680789195.2798622-UTR-C-tenellus_contig11792:2830..2878 | 1680789195.2798622-UTR-C-tenellus_contig11792:2830..2878 | Choristocarpus tenellus KU2346 | UTR | C-tenellus_contig11792 2831..2878 - |
1680789195.3246167-UTR-C-tenellus_contig11792:4868..4946 | 1680789195.3246167-UTR-C-tenellus_contig11792:4868..4946 | Choristocarpus tenellus KU2346 | UTR | C-tenellus_contig11792 4869..4946 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1680789195.2877889-CDS-C-tenellus_contig11792:2878..2880 | 1680789195.2877889-CDS-C-tenellus_contig11792:2878..2880 | Choristocarpus tenellus KU2346 | CDS | C-tenellus_contig11792 2879..2880 - |
1680789195.3009725-CDS-C-tenellus_contig11792:3518..3693 | 1680789195.3009725-CDS-C-tenellus_contig11792:3518..3693 | Choristocarpus tenellus KU2346 | CDS | C-tenellus_contig11792 3519..3693 - |
1680789195.314227-CDS-C-tenellus_contig11792:4790..4868 | 1680789195.314227-CDS-C-tenellus_contig11792:4790..4868 | Choristocarpus tenellus KU2346 | CDS | C-tenellus_contig11792 4791..4868 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig11792.1.1 >prot_C-tenellus_contig11792.1.1 ID=prot_C-tenellus_contig11792.1.1|Name=mRNA_C-tenellus_contig11792.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=85bp
MEVDTLRQEVANWKKRVTSLTLSFNAVDPEEHKQVKAEKQQLVETVSSME NKAAEAEKERKMLERDRDNYVREKQRLASKVQTC* back to topmRNA from alignment at C-tenellus_contig11792:245..4946- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-tenellus_contig11792.1.1 ID=mRNA_C-tenellus_contig11792.1.1|Name=mRNA_C-tenellus_contig11792.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4702bp|location=Sequence derived from alignment at C-tenellus_contig11792:245..4946- (Choristocarpus tenellus KU2346) CTGGCAGAGACAGAGTCAGAAGCGGAGCCCTCCCGACGCCTAGTGGGCCG
ACTGGAGTCTGAGAAGGCATCACTGGTGATGGAAGTGGACACCTTGAGGC
AGGAAGTCGCAAACTGGAAGAAGAGGGTCACCAGCCTAACCCTCAGCTTT
AATGCGGTGAGGGGTATGGTTTGATATTTTTATTGTTATTATTATCATTA
TTTTTATTGTTTGTAGTTTTGTCATGGCGTGTCCATCTTCAACCATCATT
GTTACTACTTTTATTACTATTTTTATTATTGTTTTTTTTTAATGTTGCTG
TAAATGTCTTCTGTGTAGGATATGATTTGCTGCAAATGACTTGATTTTGG
TCATTGTGGTTTCTGATATCAATGACATATGTGTTTATGTTTGTGTGTGT
GTGTGTGTTTCACAGTATTGTAGTATGATGATAGATGTTTTGAAGGAGAT
ATTTGTAGTAGAAGGTAAAGGTAAGGAAGCTGTTTTTCCATCTGATAAAT
TGTGTACTTTGTGTTCGAAGTATTTTCAATGCTGTTTTGACAGTTACTGT
AGCGATACTGAAGACAGTTACTGTAGTGATACTGAAGACAGTGACTGTAG
CGATACTGAAGACAGTTACTGTAGTGATACTGAAGACAGTTACTGTAGCG
ATACTGAAGACAGTTACTGTAGTGATACTGAAGACAGTGACTGTAGCGAT
ACTGAAGACAGTGACTGTAGTGATACTGAAGACAGTGACTGTAGCGATAC
TGAAGACAGTGACTGTAGTGATACTGAAGACAGTGACTGTAGCGATACTG
AAGACAGTTACTCCTGCATTGTTAACCAAATTTTGTCAATTTTTTTTATG
CTTCCAAAGGTTAATAGTGTTTTGAGTCTTTTGTCGCTACGCTTGTTATT
TATTTTTATTTCCCTAAAAAAAATGAAAGTTATTTATGGATGCTTTTCTT
GTTACCTAGTGATGGGGAAGATTGTGGTTTTTAGGGTTAGGGTAATTGTG
ACATAAACGCCTTTAAAATACGTCATCAGTTATTTTTAAAGGTGATCATG
TGATGTACAATCGATTATTTTTATTATGTAGTATCTTTTTTTCCTTTTTT
TAGAAAGTATTGCAAAAAAGAGGTAACTATTTAACTATTTTTAGAAGGAT
GACAGTTTCAGTGTGATTGTTGAAAACAGAAAACAGATTGTGATAATTAA
TAAAACAATGTACATTTATTTTTACGGCAATAATAATAATAATAATAATT
AAGGTGGATCCGGAGGAGCACAAACAAGTTAAGGCTGAGAAGCAGCAGCT
GGTAGAGACGGTGTCGTCCATGGAGAACAAGGCAGCCGAGGCTGAGAAGG
AAAGGAAGATGCTGGAGAGGGATAGGGATAACTATGTTCGAGAAAAGCAA
CGCCTTGCATCTAAGGTACAAACCTGCTGTACTACTATTGATTGTTAAAC
CGTGCACATTTTGCATTGTGATGGGGGAGGGAGGGGGGGGGATCAGTGGT
TAATGGTTGAGGTGTAGGGTTGGCTCTATGGTGGTACTAGATTTTTTTGG
TGGGTAGGGTAGATGATCATGGGATAAGGTGGGGGAAGAGGTTAGGTTTA
GGGTTTAGTGGGGTAGTGTGGAATATGTGGGGTTTGGGTCAGTCAATGGA
TTTTCGGGGGGTGGGGAGTGGGGTTTTGTAGTCAGGAGTTTCGGAGGTTT
TGGTCCATAATTGTGTTTCTGGATACATGATTTAGTGTTGGCTATTTTTA
TTTTTTTAATAGGGGGTGATGGTGATGTGATGTTTTCGTGGTTCTCTTGT
ATACATAATAATATTGCCATTAAGAGTATGACTTATACTAGTCATATTAT
TATATTGAACATAATGGGAGTGTTACATGGTACAAGTTGTGTCATTTTAG
TAGTAATTTTAGTAATAGTTACAAATGCTGTTGGTAGCTCAGTGGTTTGT
CTCAACACCCAGGTTTTGCTTACATTCTTATTGTTGTTATTGTTATTATT
ATTGTTATTATTATTATTATTGATGTTGTCTCTCTTTGCAGGTGTCTGAT
ATGACCCAGGCAGCAGAGCAGCGCAGTGCAGCATTGGAAAAGGCCACGAA
GGAGACTGCCATTAGGGTCAGTTACTAATATTATTATTTTATCATTATTA
TTTTTGGAGGGGTTAGGGTTATAGGGTATGTGATGTCTTCACAATTCAGT
TAATTGAGGACTTGCCGTGTTTACCCTGTGTGTGTTGTCTGTGTTTTGTC
TGTGTGTGTGTGTGTGTGTTTTGCCTTAGACTTTGCTCCCTGTGCATCAT
GGTTAAGTTTCTGATATAAAAAGTTAATTTTGTTTTGAACGTTCCTTCTT
GGCTTTTTATAGTTATTTTTATAGTCCCATTACTCTCAGTGTTACCGGTA
TGTAACACAAGCAATACGTGTAACTTCATGTGCAGTAATGAAATATGATG
TTACGACAGTAATATGATGGTATGGCATGCTGTGAATTGTTTTACAGTGA
GGACAGATTACCAATCAACAGTTTTCACGCCTAGTTTGACATCAAGCAGC
AAAACACCTGCACTTATTGAAAACTGTACAAAAAATAAAAATAAAATTCA
TTTGTTTTGAAAAAAAAGTATTATCAATAATTTGTTTGTTAGTCATCAGC
GATGGCAGTGTCTCTTTTAAACGTTCCATTCCTAATGTGTTGTGTTGTGT
TATGTTATGTTATGTTATTTGCAGGCACAGTCATTGAAGCGACTTGAGGC
TCAGCTGACTTCTGAGAAGGAGAGGCTTGCTAAGGTCAGTTGAAAGAGAT
AGTTATTGTTCATTTGAATGGACCAGTTACTTCGTTACTTAGGTTACTTA
GTTTTCAAATAGTGGGATAGAACAGCCATGAAAGTCAAGTTGTAATAGGG
AGCATTGTTGACATGACCAGGTAGTCTGTTGAGTGAGTGAAAGTATCTTA
GGGTTAGGGTTAGGGTATGAGTTTTGCCCTGTTCTTGTCCGTGTGGGTCT
TACATATCCTTAGCTTCCCATGTTTTTTTCATGACATTTGCCTACTCCAA
AAATGTTTGGGAGTAGGTAAAATGTATACGTTATGAAGAGGTGTGTCCAG
AACAAGGATATTGACACTTTTTAATGATATGATAGCCAAAATTACATCAA
AATCGCAACATTGGAATTTGGCCCCCAAATGGACACAGCTCTACCCTCTA
AGATACTTTGGTTCAATGGTTAAATTGAGGATACATAAGGTTAATTTAAT
TTCTGTGAGTTAGGGTTGTGGTTGAGATAAGGTCTTGTCCTGTATGGTGC
TAGACAAAAACATAACTATGATATAGTGTTGTATATTTTATGAGGAAAAG
GATAATGATACAATATTATTGGATGAATAGGGTTAGGGTTGGCTTTAACT
CTTTGTTTTTTTGTGTTATTCCTGTTAATAATTAATTTTAAAAAGTGTTG
GTTTGAGTATTGCACTGTGTAGGTTGATGTTAACATACTGATGTTTGACT
GGGGTTAGGGTTTGTGTTTGGTGAATGAAGATGAAGGGATAGACTTGGGT
AGATTAGGTAGATTGAAGGTAAGGTGTTCAACATGTTCCAAACGACTTGA
GTTTTCATCAGTTTTCGATAGGACGAGAAGCCGGTGAATGAAATGATTGA
TTTATGTGTACGTTGGAGTGTTTATATTTTTTGATTAAAAAAAAAGAAAA
AAATTAATGGTAAAAAACAAGAGGAGTTTTATGTTATTATTTTATGTGAG
ATGACAACATTAGATGCAATGGTGTGGGGGAAGCAGGTGTTTTTGTTTGA
CCTGTCTAGTGTTTTGTTGTTATAGCGTGAAGATTTTGGTGTTTGTAGTT
GCTGGGGTGGCATATTGGCATGTTGACATCGGCATCGACGTGTATGTGAT
CAATTTGAAGAATACTAGTGGAGTGTAACTGTAGCATTTTTTTTCTATTT
TTTTGTTACTGTGTAGAAGATGTTAGTGTGCTGTTTTGATTGGTTGAACT
CCACTGAGCTCTTCTACTATGATTTTCTAGAAACATTGTCGAAGGCCTCT
GATTAATCCATGGTTGACAGACATGTGAAGTAAGTAATACTCTCTTTTTT
TTACCTCCTTCCTGTCAACACATTCACACTTAACACTTGGATGACGTTTT
ATGGCAGGCGTTGGCAGAGACTGCCACTGTCAGGGCTGAACTGCAAAGGG
CAAGGTCAACCAACACTGCTACCACTGCCATGGCAGAGCTCAGAGAGCAG
GTGTGTTATTAGTGGGATATGAGGGTGGTGATCCATACTTTCATGTTATG
ATTTTGAAGTAGTAGGTGTTTTTTTGTTTTATGTGGGGTTACTTTTGTGT
TGGTTACATGTGTGTGTATGTATTTATATTCTGGTTGAATGTGCACCTAT
GTATGTACACTTTTTTCTATGATTTTTTTCCATGTAGTATCTATGTCCCC
GTTGGTACTGACTCCCTGCACTGTAGTAGATTGTGCTGATTTGTTTGTTG
TGCATATATATTTTTTAATGTTGGGAATTAAAATTAAAAACAAAAAATAA
ATAAAAACAAGGTGAGCAAGCTGTCGGCGGAGAAGGCAGAAATGACTGCA
GATATGGACAAAAAGTCTAAGGAGCTGGAGAGCAAGGAGAGGGAGAATGT
CACCAACAGAACCATGTATGAAAACATGAAGGAGGTCGGTCGCCGTATGA
AG back to topCoding sequence (CDS) from alignment at C-tenellus_contig11792:245..4946- >mRNA_C-tenellus_contig11792.1.1 ID=mRNA_C-tenellus_contig11792.1.1|Name=mRNA_C-tenellus_contig11792.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=255bp|location=Sequence derived from alignment at C-tenellus_contig11792:245..4946- (Choristocarpus tenellus KU2346) ATGGAAGTGGACACCTTGAGGCAGGAAGTCGCAAACTGGAAGAAGAGGGT CACCAGCCTAACCCTCAGCTTTAATGCGGTGGATCCGGAGGAGCACAAAC AAGTTAAGGCTGAGAAGCAGCAGCTGGTAGAGACGGTGTCGTCCATGGAG AACAAGGCAGCCGAGGCTGAGAAGGAAAGGAAGATGCTGGAGAGGGATAG GGATAACTATGTTCGAGAAAAGCAACGCCTTGCATCTAAGGTACAAACCT GCTAG back to top
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