mRNA_C-tenellus_contig1179.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1179.1.1
Unique NamemRNA_C-tenellus_contig1179.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig1179.1.1 vs. uniprot
Match: D8LBI1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBI1_ECTSI)

HSP 1 Score: 373 bits (958), Expect = 4.420e-121
Identity = 239/490 (48.78%), Postives = 322/490 (65.71%), Query Frame = 1 
Query:    1 EDPTPDATRLAFTSTVYGKDP-DAAEQTLAQVTAAEALKKKVGHEPVRGAGPSSKTHDRRSLFDSSLSQQSEDGKHADSIKRDVSADTPNATRLAFSSGVYGKDPDTVE-LTADQAEEIAALQSKV-GNIVAPATAAPIHDQRSLFDSGMSQ-SHDDKTSDSIKRNVASDTPDATRLAFASAVYGKDPQ-AAQLTLDQAEEVEALKRKVGKQTAVSCAAPIHDERSMFDSGMSQ-MQDDKTTDSIKREVYTDTPDSTRLAFRATVYGKDPDVTAPLSVEDAAAIEALKSKAEGIIQTSTSRPAPIHDSRSLFDSDLGDDTGHTDSS-SVKREIFADTPDKTRLAFRATVYGKDPEADKLSPEGVAEVETLKRKSENTGLGQPDGGGASKVAPIHHTRSMFDSDLGDDTGH-RISSSVKRTVVADTPDTTRLSFFGSTYGDASVDEEQAAVAEELKEKSTKPRPPK------QGSKVHNTKKAMFESDYSQ 1428
            +D TP  T+LAF+S+VYGKDP    E T  +  AA  LK++      R    ++  HD R++FDSSLSQQ+EDGK + SIKRDV+ADTP+ATR+AF +  YGKDP+    L+A +AEE+ AL+++  G+ VA A AAP+HD+R++FDS ++Q +   +  D+IKR+V +DTPDATR+AF ++ YGKDPQ AA L+  +A EVEAL+ +   + A + AAP+HD RSMFDS ++Q     + +DSIKREV  DTPD+TR+AFRA+VYGKD    A LS ++AA ++ L+ +A G    S++  AP+HDSRS+FDSDL    G    S S+KR + A+TP+ TRL F  + YGKDP +   S +  AE+  L   +E  G G P    A+  APIHH RSMFDSDL +  G  R S+++KR V   TP  TRLSFFGSTYGD      +A  A+ L EK  K           Q +KVHNT+KAM + +YSQ
Sbjct:   49 DDVTPPKTKLAFSSSVYGKDPASGGEPTAEEAAAAAQLKREAEAGTAREGAAAAPVHDNRNMFDSSLSQQAEDGKESGSIKRDVAADTPDATRVAFGATAYGKDPEAAAALSAQEAEEVEALRARAKGDGVAGAAAAPLHDRRNMFDSDLTQGAGSTQAFDAIKRDVKTDTPDATRVAFRASAYGKDPQTAAALSEQEAAEVEALRMRAQGRGAAA-AAPVHDSRSMFDSDLTQGAGSTQGSDSIKREVSGDTPDATRVAFRASVYGKDGQAAAALSEQEAAEVDELRVRAHGA-GASSADAAPVHDSRSMFDSDLTQGAGAMQGSDSIKRHVAANTPEATRLVFAGSDYGKDPRSVDNSEKKKAEIAAL---AERVGAGTP----AAAAAPIHHDRSMFDSDLAEGAGAARESTAIKRHVETATPALTRLSFFGSTYGDDDPGSNKADHAQALAEKQKKGAKLARVGAGVQSAKVHNTEKAMADDEYSQ 529
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1179.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBI1_ECTSI4.420e-12148.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1179contigC-tenellus_contig1179:1045..2769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1437
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_003900.1
Cds size1437
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789195.042418-CDS-C-tenellus_contig1179:1044..13541680789195.042418-CDS-C-tenellus_contig1179:1044..1354Choristocarpus tenellus KU2346CDSC-tenellus_contig1179 1045..1354 -
1680789195.0731757-CDS-C-tenellus_contig1179:1642..27691680789195.0731757-CDS-C-tenellus_contig1179:1642..2769Choristocarpus tenellus KU2346CDSC-tenellus_contig1179 1643..2769 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1179.1.1prot_C-tenellus_contig1179.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1179 1045..2769 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1179.1.1

>prot_C-tenellus_contig1179.1.1 ID=prot_C-tenellus_contig1179.1.1|Name=mRNA_C-tenellus_contig1179.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=479bp
EDPTPDATRLAFTSTVYGKDPDAAEQTLAQVTAAEALKKKVGHEPVRGAG
PSSKTHDRRSLFDSSLSQQSEDGKHADSIKRDVSADTPNATRLAFSSGVY
GKDPDTVELTADQAEEIAALQSKVGNIVAPATAAPIHDQRSLFDSGMSQS
HDDKTSDSIKRNVASDTPDATRLAFASAVYGKDPQAAQLTLDQAEEVEAL
KRKVGKQTAVSCAAPIHDERSMFDSGMSQMQDDKTTDSIKREVYTDTPDS
TRLAFRATVYGKDPDVTAPLSVEDAAAIEALKSKAEGIIQTSTSRPAPIH
DSRSLFDSDLGDDTGHTDSSSVKREIFADTPDKTRLAFRATVYGKDPEAD
KLSPEGVAEVETLKRKSENTGLGQPDGGGASKVAPIHHTRSMFDSDLGDD
TGHRISSSVKRTVVADTPDTTRLSFFGSTYGDASVDEEQAAVAEELKEKS
TKPRPPKQGSKVHNTKKAMFESDYSQDD*
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mRNA from alignment at C-tenellus_contig1179:1045..2769-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1179.1.1 ID=mRNA_C-tenellus_contig1179.1.1|Name=mRNA_C-tenellus_contig1179.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1725bp|location=Sequence derived from alignment at C-tenellus_contig1179:1045..2769- (Choristocarpus tenellus KU2346)
GAAGACCCTACCCCAGATGCCACCCGATTGGCCTTCACTTCTACAGTATA
CGGTAAAGACCCCGATGCAGCAGAGCAAACCTTAGCGCAGGTCACTGCAG
CGGAGGCACTCAAGAAAAAGGTGGGGCACGAGCCCGTTAGGGGGGCAGGG
CCTTCTTCGAAAACCCACGACAGACGATCCTTGTTTGACTCCAGTCTCTC
GCAGCAATCGGAGGATGGTAAGCATGCTGACTCGATCAAGCGCGACGTCA
GTGCTGACACCCCGAATGCTACGAGGCTAGCCTTTTCCTCAGGGGTGTAT
GGCAAGGACCCGGACACGGTTGAGCTGACAGCAGACCAGGCAGAGGAGAT
TGCTGCCCTCCAAAGCAAGGTTGGGAATATTGTGGCTCCCGCTACAGCAG
CCCCCATCCATGATCAGAGATCACTATTCGACTCGGGCATGTCCCAGTCC
CATGACGATAAGACATCGGACTCGATCAAGCGCAACGTCGCCTCCGATAC
CCCAGACGCAACACGGTTAGCATTCGCGTCCGCGGTGTATGGCAAGGACC
CTCAAGCAGCACAACTGACCCTGGACCAGGCAGAAGAGGTTGAGGCACTC
AAACGAAAAGTAGGCAAGCAAACTGCAGTTAGTTGTGCGGCACCAATCCA
TGATGAAAGATCAATGTTCGACTCCGGAATGTCCCAAATGCAAGACGACA
AGACGACTGACTCGATCAAACGCGAAGTCTACACCGACACACCGGACTCT
ACTCGGCTGGCTTTCAGAGCGACAGTCTACGGAAAAGATCCGGACGTTAC
AGCTCCATTGTCAGTGGAGGATGCTGCCGCTATTGAGGCCCTCAAGAGCA
AGGCCGAGGGAATAATTCAAACGTCGACAAGTCGCCCTGCTCCCATCCAT
GACAGTCGATCTCTGTTCGATTCTGACTTGGGAGATGATACTGGGCACAC
CGACTCTAGCTCTGTAAAGCGCGAAATCTTCGCTGACACCCCTGACAAAA
CCCGCCTGGCGTTTAGGGCAACTGTCTACGGCAAAGACCCCGAGGCTGAC
AAGCTGAGTCCAGAGGGTGTAGCAGAGGTGGAGACTCTCAAGAGAAAATC
GGAGAACACAGGATTGGGACAGCCTGAGTCAGGAAAGGGAAATGGCAATA
CTTCCACTGCCGCCCCTATCCATCACAGTCGCTCTTTGTTTGACTCTGAC
TTGGGAGATGACACTGGACATGGGGGCTCTAGCTCCGTGAAGCGCACAGT
AGCTGCTGACACCCCGGACTCTACCCGTCTTGCATTCAGGGCTACAGTGT
ATGGCAAAGACCCGGAGGCAGACCAGCTGAGTGTGAAGGCGGCGGCAGAG
GTTGAGGCTCTCAAGGGAAAGGCAAGTGAGGGTGGATTGGCACAACAGCA
ACCAGGTGGAGGAAGTGGCGGCGGAGCGTCAAAAGTCGCCCCAATCCACC
ACACTCGATCCATGTTCGATTCTGACTTGGGAGATGACACTGGGCATAGA
ATTTCTAGCTCTGTGAAACGCACAGTGGTTGCTGACACCCCAGATACGAC
GCGTCTCAGCTTCTTTGGCAGCACGTATGGAGATGCATCAGTAGACGAAG
AACAGGCAGCTGTGGCGGAGGAGCTTAAGGAGAAATCCACAAAACCCAGG
CCTCCTAAGCAGGGATCGAAGGTCCACAACACTAAAAAGGCCATGTTTGA
AAGTGACTATTCACAGGACGACTAA
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Coding sequence (CDS) from alignment at C-tenellus_contig1179:1045..2769-

>mRNA_C-tenellus_contig1179.1.1 ID=mRNA_C-tenellus_contig1179.1.1|Name=mRNA_C-tenellus_contig1179.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1437bp|location=Sequence derived from alignment at C-tenellus_contig1179:1045..2769- (Choristocarpus tenellus KU2346)
GAAGACCCTACCCCAGATGCCACCCGATTGGCCTTCACTTCTACAGTATA
CGGTAAAGACCCCGATGCAGCAGAGCAAACCTTAGCGCAGGTCACTGCAG
CGGAGGCACTCAAGAAAAAGGTGGGGCACGAGCCCGTTAGGGGGGCAGGG
CCTTCTTCGAAAACCCACGACAGACGATCCTTGTTTGACTCCAGTCTCTC
GCAGCAATCGGAGGATGGTAAGCATGCTGACTCGATCAAGCGCGACGTCA
GTGCTGACACCCCGAATGCTACGAGGCTAGCCTTTTCCTCAGGGGTGTAT
GGCAAGGACCCGGACACGGTTGAGCTGACAGCAGACCAGGCAGAGGAGAT
TGCTGCCCTCCAAAGCAAGGTTGGGAATATTGTGGCTCCCGCTACAGCAG
CCCCCATCCATGATCAGAGATCACTATTCGACTCGGGCATGTCCCAGTCC
CATGACGATAAGACATCGGACTCGATCAAGCGCAACGTCGCCTCCGATAC
CCCAGACGCAACACGGTTAGCATTCGCGTCCGCGGTGTATGGCAAGGACC
CTCAAGCAGCACAACTGACCCTGGACCAGGCAGAAGAGGTTGAGGCACTC
AAACGAAAAGTAGGCAAGCAAACTGCAGTTAGTTGTGCGGCACCAATCCA
TGATGAAAGATCAATGTTCGACTCCGGAATGTCCCAAATGCAAGACGACA
AGACGACTGACTCGATCAAACGCGAAGTCTACACCGACACACCGGACTCT
ACTCGGCTGGCTTTCAGAGCGACAGTCTACGGAAAAGATCCGGACGTTAC
AGCTCCATTGTCAGTGGAGGATGCTGCCGCTATTGAGGCCCTCAAGAGCA
AGGCCGAGGGAATAATTCAAACGTCGACAAGTCGCCCTGCTCCCATCCAT
GACAGTCGATCTCTGTTCGATTCTGACTTGGGAGATGATACTGGGCACAC
CGACTCTAGCTCTGTAAAGCGCGAAATCTTCGCTGACACCCCTGACAAAA
CCCGCCTGGCGTTTAGGGCAACTGTCTACGGCAAAGACCCCGAGGCTGAC
AAGCTGAGTCCAGAGGGTGTAGCAGAGGTGGAGACTCTCAAGAGAAAATC
GGAGAACACAGGATTGGGACAGCCTGATGGCGGCGGAGCGTCAAAAGTCG
CCCCAATCCACCACACTCGATCCATGTTCGATTCTGACTTGGGAGATGAC
ACTGGGCATAGAATTTCTAGCTCTGTGAAACGCACAGTGGTTGCTGACAC
CCCAGATACGACGCGTCTCAGCTTCTTTGGCAGCACGTATGGAGATGCAT
CAGTAGACGAAGAACAGGCAGCTGTGGCGGAGGAGCTTAAGGAGAAATCC
ACAAAACCCAGGCCTCCTAAGCAGGGATCGAAGGTCCACAACACTAAAAA
GGCCATGTTTGAAAGTGACTATTCACAGGACGACTAA
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