mRNA_C-tenellus_contig11774.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11774.1.1
Unique NamemRNA_C-tenellus_contig11774.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11774.1.1 vs. uniprot
Match: A0A6H5KM06_9PHAE (DUF4455 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM06_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 2.060e-31
Identity = 69/129 (53.49%), Postives = 90/129 (69.77%), Query Frame = 1 
Query:    1 KRERDIVALRDFQASLAVISDNMEGEVLAASCKLRDDLNVVEEEVKSALEELGQDEGLVQQLMPYLEDMWLKLEGMCSNRSAYVKQFGDRLEGVERQRSEAVGLKLRGLVDEMIAIAFRLPEEVEHVAE 387
            +RERD  A+  F+A ++ IS++ME  VL AS  LRD L   EE V + L ELG D+ LVQ  M Y+E+MW KLE  C  RS+ +++F   LE VE  RSEAVG +LR LVD+MIAIAFR+P+E+E +AE
Sbjct:  110 RRERDARAIETFEAGVSAISEDMEQRVLEASYALRDGLEEAEEAVATILAELGVDDQLVQGDMAYVEEMWSKLEAQCDRRSSRIQEFRKGLERVEILRSEAVGGELRRLVDDMIAIAFRMPDEIERIAE 238
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BLAST of mRNA_C-tenellus_contig11774.1.1 vs. uniprot
Match: D7FNW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW1_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 1.160e-30
Identity = 67/129 (51.94%), Postives = 91/129 (70.54%), Query Frame = 1 
Query:    1 KRERDIVALRDFQASLAVISDNMEGEVLAASCKLRDDLNVVEEEVKSALEELGQDEGLVQQLMPYLEDMWLKLEGMCSNRSAYVKQFGDRLEGVERQRSEAVGLKLRGLVDEMIAIAFRLPEEVEHVAE 387
            +RERD  A+  F+A ++ IS++ME  VL AS  LRD L   EE V +   ELG D+ LVQ  M Y+E++W KLE  C+ RS+ +++F + LE VE  RSEAVG +LR LVD+MIAIAFR+P+E+E +AE
Sbjct:  142 RRERDARAIETFEAGVSAISEDMEQRVLEASYALRDGLEEAEEAVATIRAELGADDQLVQGDMAYVEEIWSKLEAQCNRRSSRIQEFREGLERVEILRSEAVGGELRRLVDDMIAIAFRMPDEIERIAE 270
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11774.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KM06_9PHAE2.060e-3153.49DUF4455 domain-containing protein n=1 Tax=Ectocarp... [more]
D7FNW1_ECTSI1.160e-3051.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11774contigC-tenellus_contig11774:391..1308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FNW1
Preferred nameCCDC180
PFAMsDUF4455,DUF4456,RBP_receptor
Model size417
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.91e-31
EggNOG OGs2CN0H@1|root,2QT47@2759|Eukaryota
DescriptionDomain of unknown function (DUF4455)
Cds size417
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789194.3416123-CDS-C-tenellus_contig11774:390..6061680789194.3416123-CDS-C-tenellus_contig11774:390..606Choristocarpus tenellus KU2346CDSC-tenellus_contig11774 391..606 -
1680789194.354335-CDS-C-tenellus_contig11774:1107..13081680789194.354335-CDS-C-tenellus_contig11774:1107..1308Choristocarpus tenellus KU2346CDSC-tenellus_contig11774 1108..1308 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11774.1.1prot_C-tenellus_contig11774.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11774 391..1308 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11774.1.1

>prot_C-tenellus_contig11774.1.1 ID=prot_C-tenellus_contig11774.1.1|Name=mRNA_C-tenellus_contig11774.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=139bp
KRERDIVALRDFQASLAVISDNMEGEVLAASCKLRDDLNVVEEEVKSALE
ELGQDEGLVQQLMPYLEDMWLKLEGMCSNRSAYVKQFGDRLEGVERQRSE
AVGLKLRGLVDEMIAIAFRLPEEVEHVAEVGKLVGETK*
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mRNA from alignment at C-tenellus_contig11774:391..1308-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11774.1.1 ID=mRNA_C-tenellus_contig11774.1.1|Name=mRNA_C-tenellus_contig11774.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=918bp|location=Sequence derived from alignment at C-tenellus_contig11774:391..1308- (Choristocarpus tenellus KU2346)
AAGCGTGAGCGGGATATTGTGGCACTTAGAGACTTCCAGGCTTCCCTAGC
CGTAATATCAGATAATATGGAAGGGGAAGTCCTTGCAGCAAGCTGCAAGC
TCCGAGATGACCTCAATGTGGTAGAGGAGGAAGTCAAGTCAGCACTAGAA
GAACTGGGGCAGGATGAGGGTTTAGTGCAACAGTTAATGCCATATCTTGA
GGTGAGAAAAACCTGGTTTAGGAGATGATACTTACTCTGTCCTCACTCCG
ATATCCTAGAGTATTGGAGTCAAGTACATGGGAGTCAGTTCATGAACAGA
TGCCGTTGTTTGATGCATCGTTCCCTTTTAGTACTGTTTAGACAACTACA
ATTATAGACTTGGGTCTGCCCAACAAGGTTAAACCTGGGGTGCTCTAACT
GTCCTCAATTCTTGCAATAACAACATTGGGTACATTTACCAGTATTCAGG
GGATTCATTCGTGAACAACCTGCCTCTCTATGTCCCTCTCATACATACTT
ATACCCACATTTGGAGTACATACACAAGTACTCCTACACCCATACCCATA
CCTGTCCCATATACCCATACCCATACACATACACATATGTTGAAAAAAGC
ATGCACACACATCAACATCTGCAGGGTTCGAAGGTTCTCTTAGCGATTAA
TGATAATTGATTACAATCAACCTCCTCCCCAAATCTATACTGATGTGCAA
AGGACATGTGGCTAAAGCTAGAGGGCATGTGCTCCAATCGCTCAGCCTAT
GTGAAGCAGTTTGGTGACAGACTGGAAGGGGTGGAGCGGCAACGGTCAGA
GGCAGTAGGATTGAAATTGCGGGGGCTTGTGGATGAAATGATTGCTATCG
CCTTTCGACTCCCAGAGGAGGTGGAACATGTGGCTGAGGTAGGGAAACTG
GTAGGAGAAACGAAGTAA
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Coding sequence (CDS) from alignment at C-tenellus_contig11774:391..1308-

>mRNA_C-tenellus_contig11774.1.1 ID=mRNA_C-tenellus_contig11774.1.1|Name=mRNA_C-tenellus_contig11774.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=417bp|location=Sequence derived from alignment at C-tenellus_contig11774:391..1308- (Choristocarpus tenellus KU2346)
AAGCGTGAGCGGGATATTGTGGCACTTAGAGACTTCCAGGCTTCCCTAGC
CGTAATATCAGATAATATGGAAGGGGAAGTCCTTGCAGCAAGCTGCAAGC
TCCGAGATGACCTCAATGTGGTAGAGGAGGAAGTCAAGTCAGCACTAGAA
GAACTGGGGCAGGATGAGGGTTTAGTGCAACAGTTAATGCCATATCTTGA
GGACATGTGGCTAAAGCTAGAGGGCATGTGCTCCAATCGCTCAGCCTATG
TGAAGCAGTTTGGTGACAGACTGGAAGGGGTGGAGCGGCAACGGTCAGAG
GCAGTAGGATTGAAATTGCGGGGGCTTGTGGATGAAATGATTGCTATCGC
CTTTCGACTCCCAGAGGAGGTGGAACATGTGGCTGAGGTAGGGAAACTGG
TAGGAGAAACGAAGTAA
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