mRNA_C-tenellus_contig11771.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig11771.1.1 vs. uniprot
Match: D8LHW8_ECTSI (PPIase cyclophilin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHW8_ECTSI) HSP 1 Score: 172 bits (436), Expect = 2.560e-49 Identity = 86/132 (65.15%), Postives = 105/132 (79.55%), Query Frame = 1 Query: 1 QAKKRWEVEMRDRGLSKDEAFMVDTAAAAEIGLRHAKKKEKHKAAFGWNVFNQDALFKGYKKRLEQLPKGKGATAGVPLEEDPALYGSVDDASPAGVERLVDELLHKEERKKAFSRRRLEHEGADIDYINDR 396 +AKKRWE EM++RGLSKDEAFM++TA +A+I + KKEKHKAAFGWNVFNQDALFKGYKKRL++LPK K + +E D A YG+ DDA G++R+VDEL+ K +RK+AFSRRR EH DIDYINDR Sbjct: 295 EAKKRWEAEMKERGLSKDEAFMMETAQSADITAQQNNKKEKHKAAFGWNVFNQDALFKGYKKRLDKLPKAKAGSESARME-DTAEYGTRDDADSKGMQRVVDELVEKGKRKEAFSRRRSEHSATDIDYINDR 425
BLAST of mRNA_C-tenellus_contig11771.1.1 vs. uniprot
Match: A0A7S2FEJ2_9STRA (Pre-mRNA-splicing factor SYF2 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FEJ2_9STRA) HSP 1 Score: 128 bits (321), Expect = 1.480e-34 Identity = 64/130 (49.23%), Postives = 84/130 (64.62%), Query Frame = 1 Query: 7 KKRWEVEMRDRGLSKDEAFMVDTAAAAEIGLRHAKKKEKHKAAFGWNVFNQDALFKGYKKRLEQLPKGKGATAGVPLEEDPALYGSVDDASPAGVERLVDELLHKEERKKAFSRRRLEHEGADIDYINDR 396 K+RW EM+DRGL+ D++++ +TA AE KK+K KAAFGW+VFNQD L+K Y+KRL+QLPK + D YG V + ++R+ EL K ER K FSRRR E +GAD+DYINDR Sbjct: 57 KQRWAKEMKDRGLTTDQSYLFETAETAEQKYERKAKKDKGKAAFGWDVFNQDTLYKAYEKRLDQLPKNNSTAIVTKEDGDQLAYGQVVNDDKGAIDRMAQELNDKIERNKKFSRRRTELDGADVDYINDR 186
BLAST of mRNA_C-tenellus_contig11771.1.1 vs. uniprot
Match: A0A024UNX5_9STRA (Pre-mRNA-splicing factor SYF2 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UNX5_9STRA) HSP 1 Score: 119 bits (299), Expect = 3.190e-31 Identity = 60/118 (50.85%), Postives = 77/118 (65.25%), Query Frame = 1 Query: 43 LSKDEAFMVDTAAAAEIGLRHAKKKEKHKAAFGWNVFNQDALFKGYKKRLEQLPKGKGATAGVPLEEDPALYGSVDDASPAGVERLVDELLHKEERKKAFSRRRLEHEGADIDYINDR 396 L K++A+++DT AE+ + A+KKEK KAAFGW VFNQD+L+ YKKRL LP K E D YG D + GV+R+V EL H+ E KK FSRRR ++G DIDYIN+R Sbjct: 71 LPKEKAYLLDTVVDAELKAKKAQKKEKQKAAFGWEVFNQDSLYNAYKKRLHALPTEKNTNRATSKEYDELEYGKNDATTEEGVDRMVAELAHRAEVKKKFSRRRQHYDGEDIDYINNR 188
BLAST of mRNA_C-tenellus_contig11771.1.1 vs. uniprot
Match: W4H3R8_9STRA (Pre-mRNA-splicing factor SYF2 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H3R8_9STRA) HSP 1 Score: 115 bits (287), Expect = 2.120e-29 Identity = 58/118 (49.15%), Postives = 77/118 (65.25%), Query Frame = 1 Query: 43 LSKDEAFMVDTAAAAEIGLRHAKKKEKHKAAFGWNVFNQDALFKGYKKRLEQLPKGKGATAGVPLEEDPALYGSVDDASPAGVERLVDELLHKEERKKAFSRRRLEHEGADIDYINDR 396 + KD+A+M+DT AE+ + + KKEK KAAFGW VFNQD+L+ YKKRL LP K + E D YG D + GV+R+V EL H+ + KK FSRRR ++G D+DYIN+R Sbjct: 73 VPKDKAYMLDTVVDAELKAKKSHKKEKQKAAFGWEVFNQDSLYNAYKKRLHALPTEKVPGSTSTKEYDELEYGKNDGTTEEGVDRMVAELAHRADVKKKFSRRRQHYDGEDVDYINNR 190
BLAST of mRNA_C-tenellus_contig11771.1.1 vs. uniprot
Match: A0A485LIF3_9STRA (Pre-mRNA-splicing factor SYF2 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LIF3_9STRA) HSP 1 Score: 111 bits (277), Expect = 7.210e-28 Identity = 57/120 (47.50%), Postives = 78/120 (65.00%), Query Frame = 1 Query: 43 LSKDEAFMVDTAAAAEIGLRHAKKKEKHKAAFGWNVFNQDALFKGYKKRLEQLPKGKGATAGVPLEE--DPALYGSVDDASPAGVERLVDELLHKEERKKAFSRRRLEHEGADIDYINDR 396 L K++A++ D+ AE + +KKEK KAAFGW VFNQD+L+ YKKRL LP K AT G ++ D YG D AS G++R+V EL ++ + +K FSRRR ++G D+DYIN R Sbjct: 74 LPKEKAYLNDSVVDAEAKFKKVQKKEKQKAAFGWEVFNQDSLYNAYKKRLHTLPTEKAATGGATSDKPYDEMEYGKNDAASEEGMDRMVAELENRADARKKFSRRRQHYDGEDVDYINSR 193
BLAST of mRNA_C-tenellus_contig11771.1.1 vs. uniprot
Match: A0A1W0ACI8_9STRA (Pre-mRNA-splicing factor SYF2 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ACI8_9STRA) HSP 1 Score: 110 bits (274), Expect = 1.890e-27 Identity = 58/116 (50.00%), Postives = 76/116 (65.52%), Query Frame = 1 Query: 49 KDEAFMVDTAAAAEIGLRHAKKKEKHKAAFGWNVFNQDALFKGYKKRLEQLPKGKGATAGVPLEEDPALYGSVDDASPAGVERLVDELLHKEERKKAFSRRRLEHEGADIDYINDR 396 K +A++ DT A + A+KK+K KAAFGW+VFNQD+L+KGYKKRL LP+ K A DP YG D S GVER+V EL H+ + ++ FSRRR EG D+D+IN+R Sbjct: 75 KVKAYLNDTVLDAAGKSKKAQKKDKQKAAFGWDVFNQDSLYKGYKKRLNVLPEAKDKPAIAQEAYDPLEYGRQDKVSEEGVERMVAELEHRAQARQKFSRRRQFREGEDVDFINER 190
BLAST of mRNA_C-tenellus_contig11771.1.1 vs. uniprot
Match: A0A6G0X0R1_9STRA (Pre-mRNA-splicing factor SYF2 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0R1_9STRA) HSP 1 Score: 110 bits (274), Expect = 1.890e-27 Identity = 56/115 (48.70%), Postives = 76/115 (66.09%), Query Frame = 1 Query: 52 DEAFMVDTAAAAEIGLRHAKKKEKHKAAFGWNVFNQDALFKGYKKRLEQLPKGKGATAGVPLEEDPALYGSVDDASPAGVERLVDELLHKEERKKAFSRRRLEHEGADIDYINDR 396 +++++ DT A AE+ + + KKEK KAAFGW VFNQD+L+ YKKRL LP K A E D YG D A+ G++RLV EL ++ E +K FSRRR ++G D+DYIN+R Sbjct: 76 EKSYLNDTIADAEVKTKKSLKKEKQKAAFGWEVFNQDSLYNAYKKRLHTLPTEKTAQTAPAKEYDELEYGKNDTANEEGLDRLVAELGNRAEARKKFSRRRQHYDGEDVDYINNR 190
BLAST of mRNA_C-tenellus_contig11771.1.1 vs. uniprot
Match: D0MQW6_PHYIT (Pre-mRNA-splicing factor SYF2 n=10 Tax=Phytophthora TaxID=4783 RepID=D0MQW6_PHYIT) HSP 1 Score: 108 bits (269), Expect = 9.600e-27 Identity = 60/116 (51.72%), Postives = 74/116 (63.79%), Query Frame = 1 Query: 58 AFMVDTAAAAEIGLRHAKKKEKHKAAFGWNVFNQDALFKGYKKRLEQLPKGKG-ATAGVPLEE----DPALYGSVDDASPAGVERLVDELLHKEERKKAFSRRRLEHEGADIDYIN 390 A + +TA AE+ + A KKEK KAAFGW+VFNQD+L+KGYKKRL LP +G ATA V E D YG D A VER+ EL + + +K FSRRR +EG D+DYIN Sbjct: 69 AHLTETAEVAEMKAKKASKKEKRKAAFGWDVFNQDSLYKGYKKRLVNLPTSEGPATAVVTTSENALGDELAYGKDDKVEEANVERMAMELEERIKARKKFSRRRQHYEGEDVDYIN 184
BLAST of mRNA_C-tenellus_contig11771.1.1 vs. uniprot
Match: A0A3M6VMP1_9STRA (Pre-mRNA-splicing factor SYF2 n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VMP1_9STRA) HSP 1 Score: 106 bits (264), Expect = 5.780e-26 Identity = 58/116 (50.00%), Postives = 71/116 (61.21%), Query Frame = 1 Query: 58 AFMVDTAAAAEIGLRHAKKKEKHKAAFGWNVFNQDALFKGYKKRLEQLPKGKGATAGVPLEEDPAL-----YGSVDDASPAGVERLVDELLHKEERKKAFSRRRLEHEGADIDYIN 390 A + +TA AEI + A KKEK KAAFGW+VFNQD+L+KGYKKRL LP K A V + AL YG D VER+ EL + + +K FSRRR +EG D+DYIN Sbjct: 72 AHLYETAEVAEIKSKKAGKKEKRKAAFGWDVFNQDSLYKGYKKRLVSLPTSKETAASVASTGEDALGDELAYGKDDKVEEENVERMAQELEERIKSRKKFSRRRQHYEGEDVDYIN 187
BLAST of mRNA_C-tenellus_contig11771.1.1 vs. uniprot
Match: A0A4D9CQW4_9STRA (PPIase cyclophilin-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CQW4_9STRA) HSP 1 Score: 110 bits (275), Expect = 7.220e-26 Identity = 60/134 (44.78%), Postives = 80/134 (59.70%), Query Frame = 1 Query: 13 RWEVEMRDRGLSKDEAFMVDTAAAAEIGLRHAKKKEKHKAAFGWNVFNQDALFKGYKKRLEQLPKGKGATAGVPLEE------DPALYGSVDDASPAGVERLVDELLHKEERKKAFSRRRLEHEGADIDYINDR 396 RW E+ RG+ +EA+M +TA AA A +K K +AAFGW+VFNQDAL+K YKKRL +LP +G G +E DP YG AG+ R+ +EL +E +K FSRRR +EG D+ IN+R Sbjct: 311 RWRKEILARGMKPEEAYMFETAEAAGKKQAAAARKAKGQAAFGWDVFNQDALYKAYKKRLGKLPSAEGGARGEEEKEGRGEEPDPLAYGQAPRGEAAGLVRMTEELEERERARKNFSRRRAAYEGEDVSSINER 444 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11771.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig11771.1.1 >prot_C-tenellus_contig11771.1.1 ID=prot_C-tenellus_contig11771.1.1|Name=mRNA_C-tenellus_contig11771.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=123bp MRDRGLSKDEAFMVDTAAAAEIGLRHAKKKEKHKAAFGWNVFNQDALFKGback to top mRNA from alignment at C-tenellus_contig11771:875..4748+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig11771.1.1 ID=mRNA_C-tenellus_contig11771.1.1|Name=mRNA_C-tenellus_contig11771.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3874bp|location=Sequence derived from alignment at C-tenellus_contig11771:875..4748+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig11771:875..4748+ >mRNA_C-tenellus_contig11771.1.1 ID=mRNA_C-tenellus_contig11771.1.1|Name=mRNA_C-tenellus_contig11771.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=369bp|location=Sequence derived from alignment at C-tenellus_contig11771:875..4748+ (Choristocarpus tenellus KU2346)back to top |