mRNA_C-tenellus_contig1177.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1177.4.1
Unique NamemRNA_C-tenellus_contig1177.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig1177.4.1 vs. uniprot
Match: D7G501_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G501_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.660e-14
Identity = 49/112 (43.75%), Postives = 69/112 (61.61%), Query Frame = 1 
Query:  106 DPMEAEAAAWAVLALLQLSELRVLRKTLGPEVALAFLRVVPAGQA-TPYPLAARLHVGQQEAVAGAVIALQVSAPTSLSALVHLPLSYARYFPCSSQRIVVLCDIFFLLIVQ 438
            D +  E AAWA L +L    +  LR +  P VA AFLRV+ AG+A TP  L   LH G QE  AGA +AL++++P++ +AL    L+ A   P   QR+ +L D+FFLL+V+
Sbjct:  282 DALLVETAAWATLRVLHTVAMGPLRVSFAPRVAEAFLRVLVAGKAATPKHLWPSLHAGHQEVAAGAALALRLASPSATAALAPHVLAAAERVPQPRQRLALLADVFFLLLVR 393
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1177.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G501_ECTSI1.660e-1443.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1177contigC-tenellus_contig1177:12125..14465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size478
Hectar predicted targeting categoryother localisation
Exons2
Cds size474
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789194.0827267-CDS-C-tenellus_contig1177:12124..123611680789194.0827267-CDS-C-tenellus_contig1177:12124..12361Choristocarpus tenellus KU2346CDSC-tenellus_contig1177 12125..12361 +
1680789194.0932293-CDS-C-tenellus_contig1177:14226..144631680789194.0932293-CDS-C-tenellus_contig1177:14226..14463Choristocarpus tenellus KU2346CDSC-tenellus_contig1177 14227..14463 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1177.4.1prot_C-tenellus_contig1177.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1177 12125..14463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1177.4.1

>prot_C-tenellus_contig1177.4.1 ID=prot_C-tenellus_contig1177.4.1|Name=mRNA_C-tenellus_contig1177.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=158bp
NLQPSQQTLRRMRNGTRQTCLEWIEDSLRPALMSLDPMEAEAAAWAVLAL
LQLSELRVLRKTLGPEVALAFLRVVPAGQATPYPLAARLHVGQQEAVAGA
VIALQVSAPTSLSALVHLPLSYARYFPCSSQRIVVLCDIFFLLIVQSSCW
RAAGGDGR
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mRNA from alignment at C-tenellus_contig1177:12125..14465+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1177.4.1 ID=mRNA_C-tenellus_contig1177.4.1|Name=mRNA_C-tenellus_contig1177.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2341bp|location=Sequence derived from alignment at C-tenellus_contig1177:12125..14465+ (Choristocarpus tenellus KU2346)
AACCTTCAACCCAGTCAACAAACCTTGAGGAGAATGAGGAATGGAACGAG
GCAAACGTGTCTGGAATGGATTGAGGACAGTTTGCGCCCGGCGTTGATGA
GTCTGGATCCAATGGAGGCGGAGGCGGCAGCATGGGCTGTGTTAGCTCTT
CTGCAGTTGTCGGAGCTGCGTGTGTTACGGAAGACATTGGGACCGGAGGT
GGCGCTTGCCTTCCTGCGGGTTGTCCCAGCAGGACAGGTGTGTGTGTATC
TATATTTGATTTTTTGCAACAGTGTGTATACGTGTGTGAGTGAGAGATGT
ATCTATATACATACATCTCTCTCTATATATATATGTGTTACGGAGTTTCA
CCTTGCCATATAGGAGGGGGGGGTTATCTACGTATTACTGTTGAATACTT
GAAAAAACGATTTATAATTATGTATAGATGTATGTTTATTGTGGAATGGA
GTGTAGATCTATTTTGTGTGGACTTTTTTTTTGGACGCACGAATATTAGA
ATGCCCAAATGATAGTGCTGTGGGTTTCTGACTGTGGTAAGAAAGAGCCA
GCTTCATAACCGGCTCTATTTTGTACGATGGTGAGTTGTGGAAATTCTTA
TAAAAATTGTAAACATTATCATTTAAAATGAAAATTAAAACATGTTCGTT
TGTTTTTTGAGATTTTGTCAAGTGGATAAAATAGGAAAGTAGGGTGTATG
ACGTCACAGGCAGGTAGAAGGGAATGGAGGGTGGTATGATCATGGTCCCA
CATATCCAATACTTCACGTCTAGTGATAAGTACAACTGTCTTTTCCCTGA
GAAGTTCATTTGAAGGTACTCCTATTGAGGTGGTCTGATGCAGCATGTAT
TAAGTTAACTTTCTGCACAGTACGATTGCAGAAGGTTGTGTTGTTACCTC
TGTTTTTTTTTGTCAATACATTGGACTTGCCACAGAGTAACTCAAAGAGT
GGAAGGATAAACATATTGAAAAAGCAATACAGTAGAATCTCAAAGGTCTT
TTTCTGGAGTGAAAATGAATTGAGACCCCAGAGTTTATTTTTGGACAAAA
ACAAGGTATTGAAATGTTATCCAATTTGTTTTACGACTCTTCTCAGCAAT
TTGCATATGTATATATATATATATTGTTTGTCCATGTACTTGGTTGATTT
TTTATGTTATTAGATTTTTAAAATTTCCCTTTGTGTGGAAGAATGAGTTG
TATGTAACCTCCCAAACACCCCTGAGGTACAAGGACTGGACAGGGTTATT
TTGATTTGTCATTTTTTTATTTTCAGAGCTTTTAGAATTTTGGATATGGG
GTGACTCCCTTCTAATTGATTTGGGTTGAAAAGGCTCACCTCTTTCACAG
GATGTACAACTATATTAATGACATCGGTAGCTACTTTATTGCTGCATGTG
GAGGGGTGGATACCTGTCCCTAATGTTGGACGCTCCCCCTGTTCCCTTCT
ACCTATAAAAAATGTCTCCATTGATGAAAAAGTCTGGTGCTGGAGGGGTT
TCAACTCACGAAGTGTGTGTGGTTATTAGCTAAATGGTTCTGTTATTCTA
CAGCTGATTTGTATGGAGAAAGGGTGGACAGTGAAGGGACTGGCAAAGTG
AGGAGATCGCGGAGATTGCCATTTGAGAGTCCTGTCTGTATATCTGCGCA
TCTAAAATCTCTGCATGAAAATTGACTCAAATGACAATTCCATCCTCCCC
CCCAAAAAGGCTGTTTCTGTGATAGTTTTACAATGCTCTATTTTGCCCTG
CCATAGGGAAATTAATCCTAATAATTCTGTTACTAGTATACATAACTATT
GCAACAATAAAGATAAAAGACAAAAGTAGATTCTCTTCGAAACCTCTTGA
AAGATCCCTAAACTTGAACTCTACCCTAGCCCTTACCCTAACTCCCCCTA
TGGACTCTCCTTTTGAGACAGCCAATGGTGTCATCATATCACATCATGCC
CTCTTCTCCCCCCTGTATATTTTCCAAGAATATTCCCAACTTGGCAATTG
ACTTAACCAACCTACCGTACCCCCTCCCCCCCACACCATCCCCACCCCAC
AACCTCAATCTGTAATGTAATGATTGATCAACGCCGGAGAACTGTACTTC
AGGCCACTCCATATCCTTTGGCAGCACGCCTGCATGTGGGACAGCAGGAG
GCAGTGGCTGGTGCAGTCATAGCCCTGCAGGTTTCAGCCCCCACATCATT
GTCAGCCCTGGTCCATCTGCCCCTCTCATATGCCAGATATTTCCCGTGCT
CGAGTCAACGCATAGTGGTCCTCTGCGATATATTCTTCTTACTGATTGTG
CAGTCGTCTTGCTGGAGAGCGGCTGGTGGGGATGGACGGAG
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Coding sequence (CDS) from alignment at C-tenellus_contig1177:12125..14465+

>mRNA_C-tenellus_contig1177.4.1 ID=mRNA_C-tenellus_contig1177.4.1|Name=mRNA_C-tenellus_contig1177.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=474bp|location=Sequence derived from alignment at C-tenellus_contig1177:12125..14465+ (Choristocarpus tenellus KU2346)
AACCTTCAACCCAGTCAACAAACCTTGAGGAGAATGAGGAATGGAACGAG
GCAAACGTGTCTGGAATGGATTGAGGACAGTTTGCGCCCGGCGTTGATGA
GTCTGGATCCAATGGAGGCGGAGGCGGCAGCATGGGCTGTGTTAGCTCTT
CTGCAGTTGTCGGAGCTGCGTGTGTTACGGAAGACATTGGGACCGGAGGT
GGCGCTTGCCTTCCTGCGGGTTGTCCCAGCAGGACAGGCCACTCCATATC
CTTTGGCAGCACGCCTGCATGTGGGACAGCAGGAGGCAGTGGCTGGTGCA
GTCATAGCCCTGCAGGTTTCAGCCCCCACATCATTGTCAGCCCTGGTCCA
TCTGCCCCTCTCATATGCCAGATATTTCCCGTGCTCGAGTCAACGCATAG
TGGTCCTCTGCGATATATTCTTCTTACTGATTGTGCAGTCGTCTTGCTGG
AGAGCGGCTGGTGGGGATGGACGG
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