mRNA_C-tenellus_contig1177.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1177.2.1
Unique NamemRNA_C-tenellus_contig1177.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig1177.2.1 vs. uniprot
Match: D7G501_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G501_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 3.780e-24
Identity = 97/296 (32.77%), Postives = 137/296 (46.28%), Query Frame = 1 
Query:  298 DMFLDRLTVRLQE-DLRVRQGV-TGSLEAARAGLKLVANLPAEALCKLLGRREASVALQDCVSSQPDTSLRSFAIVSMGEAGERCWSFLDRRPFLNGGFESGVDAQRFTQKVRDWVIDLFQGLVKQCEDPSHPVAASCFLALRRPLQHHLLCQTRVDEELDSFWG---------------GHGRRGTLP-VEAGYKQAFPLQHLAEAVLKSAMPSLRRLQLRERALPRRYRP----PALCLCTILLVAALRLCRNPTQGICFRSHLLEVPSSTEGFLGF--GGIGSGRGDHTSVAD 1113
            D    RLT  L+E     +Q V + S E  +A ++LV++LP E LCK+L  RE                                                         +VRDW+ D F  L K C+DPS+ VAA+ F A+   L+ H LC+T VD+E+  FWG               G G RGT   +  G+KQAFPLQH+ E VL+SA+P +RRL  R+  +     P    PA+  C  ++VAALRL  +P+ G    + LL+ P+S + FLG     +GSG   + + A+
Sbjct:    6 DHCAGRLTRPLEELGSTCKQSVDSSSAEVEQAAVQLVSSLPEETLCKVLANRE---------------------------------------------------------RVRDWIHDFFSSLPKLCDDPSNIVAAAAFSAIEALLREHPLCETAVDKEVRGFWGLESDVQPEGKGGVKEGRGSRGTPGGMFGGHKQAFPLQHVGEIVLRSALPRIRRLLHRQSRMVVDGEPQTAAPAMRACASVMVAALRLSTSPS-GKPIENPLLQNPTSVD-FLGVKKSALGSGPSGNDAGAE 242
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1177.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G501_ECTSI3.780e-2432.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1177contigC-tenellus_contig1177:6744..11988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1124
Hectar predicted targeting categoryother localisation
Exons6
Cds size1122
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1177.2.1prot_C-tenellus_contig1177.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1177 6744..11988 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789193.9939811-CDS-C-tenellus_contig1177:6743..68941680789193.9939811-CDS-C-tenellus_contig1177:6743..6894Choristocarpus tenellus KU2346CDSC-tenellus_contig1177 6744..6894 +
1680789194.0033126-CDS-C-tenellus_contig1177:7202..74051680789194.0033126-CDS-C-tenellus_contig1177:7202..7405Choristocarpus tenellus KU2346CDSC-tenellus_contig1177 7203..7405 +
1680789194.0142765-CDS-C-tenellus_contig1177:7976..80721680789194.0142765-CDS-C-tenellus_contig1177:7976..8072Choristocarpus tenellus KU2346CDSC-tenellus_contig1177 7977..8072 +
1680789194.0253098-CDS-C-tenellus_contig1177:10002..101731680789194.0253098-CDS-C-tenellus_contig1177:10002..10173Choristocarpus tenellus KU2346CDSC-tenellus_contig1177 10003..10173 +
1680789194.0331175-CDS-C-tenellus_contig1177:10960..111731680789194.0331175-CDS-C-tenellus_contig1177:10960..11173Choristocarpus tenellus KU2346CDSC-tenellus_contig1177 10961..11173 +
1680789194.0411067-CDS-C-tenellus_contig1177:11700..119881680789194.0411067-CDS-C-tenellus_contig1177:11700..11988Choristocarpus tenellus KU2346CDSC-tenellus_contig1177 11701..11988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1177.2.1

>prot_C-tenellus_contig1177.2.1 ID=prot_C-tenellus_contig1177.2.1|Name=mRNA_C-tenellus_contig1177.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=374bp
YFVCFFGTAKQMEGASQLGSLPKGGNGVLTGCKRSSDICEKLSAGEKASD
CDIKQVLDDLADPEVAGRGAEVVYESIFLLLSGHGTGTGVGLKEEVVGGD
MFLDRLTVRLQEDLRVRQGVTGSLEAARAGLKLVANLPAEALCKLLGRRE
ASVALQDCVSSQPDTSLRSFAIVSMGEAGERCWSFLDRRPFLNGGFESGV
DAQRFTQKVRDWVIDLFQGLVKQCEDPSHPVAASCFLALRRPLQHHLLCQ
TRVDEELDSFWGGHGRRGTLPVEAGYKQAFPLQHLAEAVLKSAMPSLRRL
QLRERALPRRYRPPALCLCTILLVAALRLCRNPTQGICFRSHLLEVPSST
EGFLGFGGIGSGRGDHTSVADIWG
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mRNA from alignment at C-tenellus_contig1177:6744..11988+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1177.2.1 ID=mRNA_C-tenellus_contig1177.2.1|Name=mRNA_C-tenellus_contig1177.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=5245bp|location=Sequence derived from alignment at C-tenellus_contig1177:6744..11988+ (Choristocarpus tenellus KU2346)
TATTTTGTGTGTTTTTTTGGCACCGCGAAACAGATGGAGGGTGCCTCACA
GCTAGGCTCGCTCCCTAAAGGTGGAAATGGTGTCTTAACTGGGTGCAAGC
GCTCGTCAGACATCTGTGAAAAACTTTCTGCTGGCGAGAAAGCGTCAGAT
TGTAAGAAATACGTTCTCTCAATATCAACTTGAAAACTACGAACTTCTTT
CCCTCTACAGATTTCAAAATATATATTGCCATGAACAAATTCAGTTGCTT
GCGTTCTCTGTTTGTGGCATATGAGTGATTGAGCGAATCCGATTTTGGAA
GCATCACCAGGGTGAGGGAAAGTACTTGAGCACAGACGAATGTACCCAAT
AACAATGCCTAAAACGTTTGAACTTCAAGTATGCCGTGCATACATCTAAC
TCAAAAACGAGTTGAAACCCTACCTTACGCATTTACGTATCTCCTCTCCG
ATGTACCAGGTGACATAAAACAAGTTTTGGATGATCTGGCAGATCCTGAA
GTGGCTGGGCGAGGGGCGGAGGTGGTGTATGAGAGCATTTTCCTACTCTT
GTCTGGACATGGAACCGGTACAGGGGTTGGGCTCAAGGAGGAGGTCGTGG
GTGGGGATATGTTTCTTGATAGACTCACTGTTCGACTCCAGGAAGACCTG
CGTGTTCGTCAGGTTCGATTGGACCACCCTATCACCTATCAGGGCAGCCT
CTGTCAACGCATTTTTTTTTAACAGTTGTGGTATGATGTAGCTCTAATGA
CCGACGGTAATATCCAATAAGATGGAACTTGTAGTAGGCAGGTCCCCATC
TACCAATGCTGTTAATGTCAGCGTAACATGTTGAGCACACTCATGATTTT
TCCCGAACCTGTGAGTGGCCGTCCAGTTGAAACAAGTTGAAGGGGTAGAA
AGTAGGTCGAGGACTATGGGTGAAACTGGTTCTGTTCTTTGCGTTTATCT
TTCCTAATCCGAGCGCTTGGATCACTCTTGAACACAAAACCCGATGCTGC
TGAGATCACCTACGTCACTTAAAGGATATACTCGTTTGTTGTGCAACGCT
TTTTCGAAAGTGCTTGAGTATTGCCAACTATTGTTTGAAGACCGGTCTAG
TCTTTCCACCACGATGTGTGACAACCTTGCCTTAACTCCAGCCTACTCCA
CCTCATGACACCCCACCCGACCCTACTCTCCTCCTAAGTACATCACTACT
ATTTAATTATTTCTTACAATTTGGTGAAAACAGGGTGTTACAGGAAGCCT
GGAGGCAGCTCGAGCCGGCCTGAAGCTGGTGGCCAACCTCCCAGCTGAGG
CGCTTTGCAAGCTGTTAGGAAGGAGAGAGGTCAGTTTTTTTAATAGCCTA
GCAAAACTTCATTTTGAAGTTTGCCCTTGTCCTCTCTAGAGCGTTAAGGA
TGTGGTGGAGAAGTGTTGAAGCCACTTTAGTCAACGCTTCAATAGTACCA
TGATATCAAATGGTGCACCCACCACCGTGTCATTCATTATCCCCCTCTCT
GTGTTGCTAATGATTGTAGAAGGGTACTTTAATTTTTGCAAGGTATTTAT
CATGTCTCACTTTAACACAGACTGCTGCTCCGAAGACAGAGTGCTTTATG
ATATCCTAGTCCTATCAATGTTTCTGTGCAGTGTACCTAGTGATGTTGAT
GTTATGTGTGTTGTGCACTGTGAGGAGCAGACTCCTACATGGAAAGTGCT
TGGCGAAGGGAATCGAACGATGCAATAGGATTTGCTCACTAGTGGGCAGT
GCACCTGTTATCCTGGGGCAAGGGATGCTAATTCCGGAGCAAAATGTAGG
AGTTACATTGCCCTGTGCATGTGTCGGTGCCAAGGTATCATGGCAAAAGG
TAGTATGAGTTATTTGCGTCAATCATGAGAGGGCTGGCTTTTCTCTTTGG
ATTGAGCTCGGGTATATTTCCCCATGGTCATAAGTGGTGCAGATTGAGAG
AGAGAACCATTGGGAGATGAAACATGCATTTAATTTTTAATGGCACATTT
TTTTCGCTCCCCAGAGACGAGACTCTTGTCTCAAATGTTCACATCTTGCT
GCTTTGCAGTACAATAATACATACATATATATATATATACATTCCTCTCA
AGCTAGATAGAATATGATGAAATAATATCATCATTTAGCACGTTATGTAG
TAATGTAGTAGGTAGAATCAGGTAGCGGCAGCAGTGCTAATGAAATTGTC
ATGTTCTACATGCACATGCCTCTAGGAAGCATTTTGCTCCTATGCCAGGG
CAAGGTGATGCTACTGGTCTGGTCCAGTGTAAGAATGCCCCAGGAGGGGT
GCTTTAGAGTTAGTATTTCACTCTGTAGTGAAAAAAAATGTTTTCTTCTT
GACATTTTTCATGGCATGATATGAAGTCAAAAGTGCTCAATTTCCTGTGT
TAAACTGTACACCCAAGTGGCTTGTTGAAAGTGGCACCTGTTGTACATGC
CCAAAAATTATCTTCCTGGTCCACTTACTGTTGCCTCTTCCTTCCTATGA
TCCTTTCGTACCAAGACTTTTGAGGTACTTCATCCTTTTTCTTTACAGCT
GAAAATTAGAAAAATAAAGGTGAATTTTTGGAGGGGAAGTAGATCATGCT
CATCAACAGTGGTTGTGTTGTTTTCCTCTAGATACTTCAATCAACCTTTG
ATTGAAGGAGTGGTCATGTGCCCAACTTTTCTGAATAGAAGTTGCCGTTT
CGAGTTTATTTTTTTGTTTGAGTCCATTCCTACACTAGTATCAGTAGTAT
GTTACAACGTTTATTTTTTTATTTGAGGGAGTATCCTGCACTTCGGTTTT
ATGCTCTTGACTATGTCAGCTGAACAATGACGTGATTTGTTTCAGTATTT
GATGCCATTCCCTTCATGAGGCGAAACATTGGCTGTTTGAGGTAAGAGTG
TTGCGCATGGTGCACACCCCTGTAGTGAATTAGGTTACCAAATGCTCTTG
GGTAACCAAAGGGTTGGAGCTAGAGTTATGGTTATTTAGTTCTATATTTA
GAACTAAGAGCGACAAAAAAATGACGAGAAGAGTTTAAAAATTATTTCGA
AAACCTAGCCCTTTGTTTTTCTAAGGTGGGTTTGGTTTCCTAATCCACTG
GACACCTCCCATCTCTCCTTGAACACACGCCCCTCACGCACAGCTCAACG
CCGTGTTAAAAAAATCGTACTCCCGTGCACCCTCAGTTACCTTCCTTTCT
TCTGTTGTCCATGCTTTTTTTCCCACAATAATAAACGGTATCTATTGTTT
GTTGTCCAGGCTTCTGTGGCACTACAAGATTGTGTGTCCTCACAGCCCGA
TACCTCACTGCGATCGTTTGCCATTGTATCAATGGGGGAAGCGGGTGAGC
GCTGCTGGTCGTTCCTGGACAGGCGTCCCTTTCTCAATGGGGGTTTTGAA
TCAGGGGTAGACGCTCAGCGTTTCACGCAGGTTGGTGTATTGTACTTTGA
GTGGGTGTTGTACTGTGTGTTGTACTATGTGTCGTACTGTGTGTTGTATG
TGTGTGTGTGTGTGTGTGTGTGTGTGAGTGCACATGTGCACTCCCTAATC
CTAGCGTTTTGGACCTCTCGAGTCATCGTTTCTCCTTGAACTGTTTTGAA
CGTGTACTAAGAGTGTTGTTATAAATGCTAATGGTGTCTGCTAGTGGTGC
ACTGGTACACTTGCCCAGTTTTATTTTTGGACAGCTGTAGCCAGCTTGTT
CTGCTGTTGAGGAGAGTGTATGTCTTTTTGTGATGAGAGTGTTATGTCTT
TTTGTGATGAAACTGGACCGTGTGTTCACAACAAAAACTTGAGTTCCAAA
ATGACCTCTTTTTGATTGTCAGGGGCTCTTAGATACCACTAACTCTGCGC
CAAATGAGCACAATAGTGAATTGATGCTATCAATACCATGTCTGCTTTTG
TAGAAGTACCTAGATGATTTACACCTGATAATGCTGGGGATGAAGGAAGG
TGTGTGTTATCAAGGAATGAAATGTGACTTAGGCAGTGCTTCCACTATTA
CATAGCCTACTTCGAAGAAACTCTCCCACTGTGTGCTTGAAATATGGTGA
AAAATAATATATATATATGTTTAATTTCATGTCAACAAATGTAAAGCGAA
TCACATCATGAAACCCTAACGCCATCCAATTCCTTTCCAACCTCTGTCCA
TTCGCACCCCCCCTACCTCCCCCGCCTACCCATGAACTGTGAACTCCATT
TTTGGTCCTATGGACAGAAAGTCCGTGACTGGGTTATCGACCTCTTTCAG
GGCCTGGTGAAGCAATGTGAAGATCCGAGTCATCCCGTGGCGGCATCTTG
CTTTCTAGCGCTTCGCCGCCCGCTACAGCACCATTTACTATGCCAAACTA
GGGTGGATGAGGAGTTGGATAGCTTCTGGGGAGGGCATGGGAGAAGGGGC
ACACTGCCTGTAGAGGCTGGGTACAAGCAGGTGATGGCGGGGGGGGGAGA
GGTTGTGAGGGTATGGGTTTTGTTTCGTGTGTACTGTTGTTGGCTGCAGG
TTGTGTTATGGATGATAATGGGCGGGTAAATCAGAGGGATATAGGAGAAT
GGGATGGCAAGGTGCTACTACTGGCGTGGTGCAACCGTCACAGTATGGTG
CCTGCGGCATTGCTCTTTTGGGGAGAGGATTGTGGGTACTTGTTTGCTGT
GGCTACAACTCTTGTTTGAGGTGTTTGAGGTGTGTGAGCGTGTGAAGTCC
CACATGCTAGTAACTGGTAGTGTGCGTTGCCGCCATGGGTAAGCAATTCT
GCATGTTCAACTTGTCCATGATTATTTCCACCGCTGTCTTCAGTAACCCA
ATTTTCGCCCCCTTTAGCCCCCCTATTTTCCCCTGTGGATGCATGCCTAC
AGCTTAAATAGCGCCCCTGAAATGACCTTGTTCAGAACTGCTTATCAGTG
AGTGCCCCCATCCCTTCTCTCCCCACGTGCAACTCTGATCCATGGCGAGT
TGATCAGGCGTTTCCCTTGCAACACCTTGCAGAGGCAGTGCTCAAGTCAG
CCATGCCCTCCCTGCGGCGACTGCAGCTCCGTGAAAGGGCTCTTCCACGG
AGGTACAGGCCTCCAGCACTTTGTCTTTGCACTATCCTACTTGTCGCCGC
CCTTCGCCTCTGTAGGAACCCTACCCAAGGAATATGTTTTCGCAGTCATC
TGTTGGAAGTACCTTCCTCCACTGAGGGTTTCCTTGGGTTTGGAGGCATT
GGCAGTGGGCGTGGCGACCACACCAGTGTAGCGGATATTTGGGGC
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Coding sequence (CDS) from alignment at C-tenellus_contig1177:6744..11988+

>mRNA_C-tenellus_contig1177.2.1 ID=mRNA_C-tenellus_contig1177.2.1|Name=mRNA_C-tenellus_contig1177.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1122bp|location=Sequence derived from alignment at C-tenellus_contig1177:6744..11988+ (Choristocarpus tenellus KU2346)
TATTTTGTGTGTTTTTTTGGCACCGCGAAACAGATGGAGGGTGCCTCACA
GCTAGGCTCGCTCCCTAAAGGTGGAAATGGTGTCTTAACTGGGTGCAAGC
GCTCGTCAGACATCTGTGAAAAACTTTCTGCTGGCGAGAAAGCGTCAGAT
TGTGACATAAAACAAGTTTTGGATGATCTGGCAGATCCTGAAGTGGCTGG
GCGAGGGGCGGAGGTGGTGTATGAGAGCATTTTCCTACTCTTGTCTGGAC
ATGGAACCGGTACAGGGGTTGGGCTCAAGGAGGAGGTCGTGGGTGGGGAT
ATGTTTCTTGATAGACTCACTGTTCGACTCCAGGAAGACCTGCGTGTTCG
TCAGGGTGTTACAGGAAGCCTGGAGGCAGCTCGAGCCGGCCTGAAGCTGG
TGGCCAACCTCCCAGCTGAGGCGCTTTGCAAGCTGTTAGGAAGGAGAGAG
GCTTCTGTGGCACTACAAGATTGTGTGTCCTCACAGCCCGATACCTCACT
GCGATCGTTTGCCATTGTATCAATGGGGGAAGCGGGTGAGCGCTGCTGGT
CGTTCCTGGACAGGCGTCCCTTTCTCAATGGGGGTTTTGAATCAGGGGTA
GACGCTCAGCGTTTCACGCAGAAAGTCCGTGACTGGGTTATCGACCTCTT
TCAGGGCCTGGTGAAGCAATGTGAAGATCCGAGTCATCCCGTGGCGGCAT
CTTGCTTTCTAGCGCTTCGCCGCCCGCTACAGCACCATTTACTATGCCAA
ACTAGGGTGGATGAGGAGTTGGATAGCTTCTGGGGAGGGCATGGGAGAAG
GGGCACACTGCCTGTAGAGGCTGGGTACAAGCAGGCGTTTCCCTTGCAAC
ACCTTGCAGAGGCAGTGCTCAAGTCAGCCATGCCCTCCCTGCGGCGACTG
CAGCTCCGTGAAAGGGCTCTTCCACGGAGGTACAGGCCTCCAGCACTTTG
TCTTTGCACTATCCTACTTGTCGCCGCCCTTCGCCTCTGTAGGAACCCTA
CCCAAGGAATATGTTTTCGCAGTCATCTGTTGGAAGTACCTTCCTCCACT
GAGGGTTTCCTTGGGTTTGGAGGCATTGGCAGTGGGCGTGGCGACCACAC
CAGTGTAGCGGATATTTGGGGC
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