mRNA_C-tenellus_contig11769.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11769.1.1
Unique NamemRNA_C-tenellus_contig11769.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11769.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11769contigC-tenellus_contig11769:1714..4403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1972
Hectar predicted targeting categoryother localisation
Exons2
Cds size1314
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789193.9334216-UTR-C-tenellus_contig11769:1713..18201680789193.9334216-UTR-C-tenellus_contig11769:1713..1820Choristocarpus tenellus KU2346UTRC-tenellus_contig11769 1714..1820 +
1680789193.9632466-UTR-C-tenellus_contig11769:3852..44031680789193.9632466-UTR-C-tenellus_contig11769:3852..4403Choristocarpus tenellus KU2346UTRC-tenellus_contig11769 3853..4403 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789193.9419005-CDS-C-tenellus_contig11769:1820..31151680789193.9419005-CDS-C-tenellus_contig11769:1820..3115Choristocarpus tenellus KU2346CDSC-tenellus_contig11769 1821..3115 +
1680789193.9530866-CDS-C-tenellus_contig11769:3833..38521680789193.9530866-CDS-C-tenellus_contig11769:3833..3852Choristocarpus tenellus KU2346CDSC-tenellus_contig11769 3834..3852 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11769.1.1prot_C-tenellus_contig11769.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11769 1821..3852 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11769.1.1

>prot_C-tenellus_contig11769.1.1 ID=prot_C-tenellus_contig11769.1.1|Name=mRNA_C-tenellus_contig11769.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=438bp
MLVPSHQPSVKEDVDVVQPLKVAHRDRLIEAEDTTPLHRPEPRGRVKVVE
EPREGRKIQSRRTKDDDSALFIAAERGYMNVVRGLLAQGVHHETRSKIGA
TPLYVAAGCGHIDVVLELLKFGAFHSARTNDGATPISIAAQQGHVDIVEV
LLEAGADQLAKMKTGSTPLILAAFHGHVEVVRVLMLARLDGGQNSVDVNE
ALVVATLQGHVRVVQEFLGIAGVDGGVKMEDGVTPLHIASREGHLDVVRV
LLEAGMDCNERRSDGVTPLHIASCEGHLDVVRELLGAGAHHDVLNEIGAT
PLCDAILGGHALVVHELLVAGANPTQVTVWDDGSFLHPTTNCDGQLSLEP
LPDECQNLDSGDRDNEDAGFAAATNKRIEEMIIRAPSLRSSSWKWPIAID
DSSFLPKPELKVFPLMIFTEGTHARNMKSMCGYLDKS*
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mRNA from alignment at C-tenellus_contig11769:1714..4403+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11769.1.1 ID=mRNA_C-tenellus_contig11769.1.1|Name=mRNA_C-tenellus_contig11769.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2690bp|location=Sequence derived from alignment at C-tenellus_contig11769:1714..4403+ (Choristocarpus tenellus KU2346)
ATAACCCCCTACCTTTCATTGGACATCTCTGCCTATTTTCATCAGGTGGG
AGACCTATGTTCCCACTATCCTAGAGGAAATCGTCCCAGACTTATCTCCC
TCTACTGATGTTGGTCCCCTCTCATCAACCTTCTGTAAAGGAGGATGTAG
ATGTGGTGCAACCACTGAAGGTTGCACACCGAGATCGGCTGATCGAGGCT
GAAGACACCACTCCCCTTCATCGACCTGAGCCCAGAGGCCGTGTAAAAGT
GGTGGAGGAACCGCGAGAAGGAAGGAAAATTCAAAGTCGAAGGACGAAAG
ATGATGACAGCGCCCTCTTCATTGCTGCTGAAAGGGGTTATATGAATGTG
GTGCGGGGTCTTCTTGCACAGGGTGTCCATCATGAAACAAGATCGAAGAT
CGGTGCTACACCTCTCTACGTTGCTGCTGGGTGTGGGCACATAGACGTGG
TACTAGAGCTGCTCAAATTCGGCGCGTTTCATAGCGCAAGAACGAACGAT
GGAGCTACCCCTATTTCCATTGCGGCTCAGCAAGGACACGTTGATATCGT
GGAGGTCCTTCTTGAGGCTGGGGCAGACCAACTAGCAAAAATGAAAACTG
GCTCGACACCTCTCATCTTAGCCGCCTTTCATGGGCATGTGGAGGTGGTG
AGGGTGCTGATGTTGGCAAGGTTGGATGGTGGACAAAATTCGGTGGACGT
TAACGAGGCTCTCGTTGTGGCCACCTTGCAAGGGCATGTAAGGGTAGTAC
AAGAGTTCTTGGGTATTGCTGGTGTTGATGGTGGTGTAAAAATGGAGGAT
GGTGTTACCCCTTTACACATTGCATCAAGAGAAGGTCACTTGGACGTGGT
GCGCGTACTGCTAGAGGCTGGGATGGACTGCAACGAACGGAGGTCGGACG
GGGTGACCCCTCTGCATATTGCTTCGTGCGAGGGGCATTTAGATGTGGTT
CGGGAGTTGCTTGGAGCTGGGGCACACCATGATGTTTTGAACGAAATAGG
TGCCACACCCCTTTGCGATGCGATACTGGGTGGTCACGCGCTAGTGGTGC
ACGAACTGCTTGTGGCAGGAGCAAACCCGACTCAAGTGACTGTGTGGGAT
GATGGATCCTTCCTACACCCAACAACCAATTGTGACGGTCAATTGTCACT
GGAACCACTGCCTGATGAATGCCAAAACTTGGACTCTGGAGATCGTGATA
ATGAAGATGCCGGTTTCGCAGCTGCAACAAACAAACGGATCGAAGAGATG
ATAATCAGGGCTCCTTCCCTCCGTTCCAGCTCCTGGAAGTGGCCCATTGC
TATAGATGATTCTTCATTCCTCCCCAAGCCAGAGTTGAAAGTTTTTCCCT
TGATGATCTTCACGGAGGGGACCCACGCGAGGAACATGAAGAGTATGTGT
GGGTGAGTTCTTACGATATGATAGGGTGCAATTGCTCGATATGTACGCAA
TATTTGATATTGCGCCCCTCTCTGTTATGTTGTAGACCAACCCAATAATA
ATATTTCGATTGGGTGGAGAAATACTGAGGTTCAGGGCTACTTGTCACTA
CATTGTACAGTCGTTTGTGGAACCTTTTTTTTAACGTCCTCCGCCCAAAA
TGTTGTTACTGAGCTGCTGATCAAAGTAATATGCTATTCTGTTGTGTTTA
TGCCATTGATCAGTAGAACATGTCAAAATTGGACACTGCTGGTTTTGCTT
TGTTCTGACCTTCTTTCCCTCTTGCAAACAGTTATTGTGTTATTGTTTGC
ATACAAATAAAAGCATGCATTATTACCCGATTACATTTTGGAAAGAGAAC
TCTGCTACCTGTATGCTGGTTGCAAGGATGGTTGTTTGTAGACTGCAACT
AGTGAGAAGGGAAATATGGTCAACATCCTTGCATTGTTGTTATAATTTGA
ACCCTGTTAGTGTAATGTTTCCTCATTACTTGGAAGAATAATGCAATACC
TTACGACAGTAATATTTGAACTTCTCAGGTCAAAACGCTTCTCCTTTTTT
CTTAAGTTTTTTGTTGCATTGATTGCATCCATCCTGTGGTCTGTTAGATC
ATTGTAGTGTGTGACATCAGGTCTAAGATTTTCCCATATATTTGTCTTCT
AACAATGGACCCATTTACAGATATCTGGACAAGAGCTGATCGAGTTTGAG
TTTTGGTGTCACAAGGAAGGAATACTCAATCTGCACCCCCCCTGTTCATG
GCTTTGTATGGGCAAGGGTGCTGGCTGAAATACCAAGCAGCTGCATTGAC
ACCAAGGAGTTCAGCTCACCACCTTACAATAGATAAGAGTAAAGCGCAAG
GGAGCAGATCTGCTCCCATACGTCAACTCTATGTATATTGATAGGAAGTA
TATTATTTACTCATACTTGATTAATTTAACTATAGCTCTGCTGCTCAATT
GTACTTGAAGAGGAGCATGGTAGTTCTGTCGTTTTGTTACGATCATGTCG
GTAAGTGCTCAGGTTACGTTCTGGTTCTGATGCTTGGTTAGAGTTCCCAC
TCAAGCAGTCCTGCTTGTCTTGCCCAGGACTCACCAGATGTCTCCCTTTG
GTTTAGTTTCTACTTCATGCTTGTATATGCTTGACTGACCAAACCAGTGT
GTATGTTCATGCTAAGCTGGCCCACATGGGACAGCATGTTGATCTACTGC
TGCCACTATCGTAACACGCCACAAAAATGCTAGTGTCACC
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Coding sequence (CDS) from alignment at C-tenellus_contig11769:1714..4403+

>mRNA_C-tenellus_contig11769.1.1 ID=mRNA_C-tenellus_contig11769.1.1|Name=mRNA_C-tenellus_contig11769.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1314bp|location=Sequence derived from alignment at C-tenellus_contig11769:1714..4403+ (Choristocarpus tenellus KU2346)
ATGTTGGTCCCCTCTCATCAACCTTCTGTAAAGGAGGATGTAGATGTGGT
GCAACCACTGAAGGTTGCACACCGAGATCGGCTGATCGAGGCTGAAGACA
CCACTCCCCTTCATCGACCTGAGCCCAGAGGCCGTGTAAAAGTGGTGGAG
GAACCGCGAGAAGGAAGGAAAATTCAAAGTCGAAGGACGAAAGATGATGA
CAGCGCCCTCTTCATTGCTGCTGAAAGGGGTTATATGAATGTGGTGCGGG
GTCTTCTTGCACAGGGTGTCCATCATGAAACAAGATCGAAGATCGGTGCT
ACACCTCTCTACGTTGCTGCTGGGTGTGGGCACATAGACGTGGTACTAGA
GCTGCTCAAATTCGGCGCGTTTCATAGCGCAAGAACGAACGATGGAGCTA
CCCCTATTTCCATTGCGGCTCAGCAAGGACACGTTGATATCGTGGAGGTC
CTTCTTGAGGCTGGGGCAGACCAACTAGCAAAAATGAAAACTGGCTCGAC
ACCTCTCATCTTAGCCGCCTTTCATGGGCATGTGGAGGTGGTGAGGGTGC
TGATGTTGGCAAGGTTGGATGGTGGACAAAATTCGGTGGACGTTAACGAG
GCTCTCGTTGTGGCCACCTTGCAAGGGCATGTAAGGGTAGTACAAGAGTT
CTTGGGTATTGCTGGTGTTGATGGTGGTGTAAAAATGGAGGATGGTGTTA
CCCCTTTACACATTGCATCAAGAGAAGGTCACTTGGACGTGGTGCGCGTA
CTGCTAGAGGCTGGGATGGACTGCAACGAACGGAGGTCGGACGGGGTGAC
CCCTCTGCATATTGCTTCGTGCGAGGGGCATTTAGATGTGGTTCGGGAGT
TGCTTGGAGCTGGGGCACACCATGATGTTTTGAACGAAATAGGTGCCACA
CCCCTTTGCGATGCGATACTGGGTGGTCACGCGCTAGTGGTGCACGAACT
GCTTGTGGCAGGAGCAAACCCGACTCAAGTGACTGTGTGGGATGATGGAT
CCTTCCTACACCCAACAACCAATTGTGACGGTCAATTGTCACTGGAACCA
CTGCCTGATGAATGCCAAAACTTGGACTCTGGAGATCGTGATAATGAAGA
TGCCGGTTTCGCAGCTGCAACAAACAAACGGATCGAAGAGATGATAATCA
GGGCTCCTTCCCTCCGTTCCAGCTCCTGGAAGTGGCCCATTGCTATAGAT
GATTCTTCATTCCTCCCCAAGCCAGAGTTGAAAGTTTTTCCCTTGATGAT
CTTCACGGAGGGGACCCACGCGAGGAACATGAAGAGTATGTGTGGATATC
TGGACAAGAGCTGA
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