mRNA_C-tenellus_contig11759.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11759.1.2
Unique NamemRNA_C-tenellus_contig11759.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig11759.1.2 vs. uniprot
Match: D8LKL8_ECTSI (GPA2, alpha subunit of a heterotrimeric G protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL8_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 1.010e-41
Identity = 79/111 (71.17%), Postives = 89/111 (80.18%), Query Frame = 1
Query:  289 NVFRMGEAIELFREICLNPYFERSSIILFLNKKDLFAEKIPVKDISTVPEWSDFRGPCTFDKGVNYFLEKFLSSNITSKTVYHHVTCATDSENIRVVFNSCKDTILRNNLR 621
            N  RM EA+ LF+ IC N YF+RSSIILFLNKKDLFAEK+    I+   EWSDF+G CTFD+GV+YFLEKF ++N   KTVYHHVTCATDSENI VVFNSCKDTILR N R
Sbjct:  236 NTNRMTEAVNLFQGICSNSYFKRSSIILFLNKKDLFAEKLATNPINHTKEWSDFKGACTFDRGVSYFLEKFNAANTAKKTVYHHVTCATDSENIEVVFNSCKDTILRINFR 346          
BLAST of mRNA_C-tenellus_contig11759.1.2 vs. uniprot
Match: A0A6S9GNU7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GNU7_HETAK)

HSP 1 Score: 141 bits (355), Expect = 4.760e-35
Identity = 71/116 (61.21%), Postives = 86/116 (74.14%), Query Frame = 1
Query:  298 RMGEAIELFREICLNPYFERSSIILFLNKKDLFAEKIPVKDISTVPEWSDFRGPC-TFDKGVNYFLEKFLSSNIT-SKTVYHHVTCATDSENIRVVFNSCKDTILRNNLRTSGFMD 639
            RM EAI+LF EIC N YF  SS+ILFLNK+DLFAEKI +KDI  V  ++DF G    F+ GV YFL  FL  N    + +YHHVTCATD++N++VVFN+CKD ILR NL+ SGFMD
Sbjct:   53 RMVEAIDLFAEICNNRYFHNSSMILFLNKRDLFAEKIMIKDIKAVMHFNDFPGGLGDFELGVQYFLNLFLKVNQNPERVIYHHVTCATDTQNVQVVFNACKDIILRGNLKDSGFMD 168          
BLAST of mRNA_C-tenellus_contig11759.1.2 vs. uniprot
Match: A0A7S2XUR0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUR0_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.890e-33
Identity = 73/116 (62.93%), Postives = 86/116 (74.14%), Query Frame = 1
Query:  298 RMGEAIELFREICLNPYFERSSIILFLNKKDLFAEKIPVKDISTVPEWSDFRGPC-TFDKGVNYFLEKFLSSNIT-SKTVYHHVTCATDSENIRVVFNSCKDTILRNNLRTSGFMD 639
            RM EAIELF EIC N YF  SS+ILFLNK+DLFAEKI VKDI  V  ++DF G    F+ GV YFL  FL  N    + +YHHVTCATD++N++VVFN+CKD ILR NL+ SGFMD
Sbjct:  241 RMVEAIELFAEICNNRYFHNSSMILFLNKRDLFAEKIMVKDIKQVSHFNDFPGGLGDFELGVQYFLNLFLKVNQNPDRVIYHHVTCATDTQNVQVVFNACKDIILRGNLKDSGFMD 356          
BLAST of mRNA_C-tenellus_contig11759.1.2 vs. uniprot
Match: W7U751_9STRA (G-protein complex alpha subunit n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U751_9STRA)

HSP 1 Score: 136 bits (343), Expect = 2.390e-31
Identity = 70/117 (59.83%), Postives = 88/117 (75.21%), Query Frame = 1
Query:  298 RMGEAIELFREICLNPYFERSSIILFLNKKDLFAEKIPVKDISTVPEWSDFRGPCT--FDKGVNYFLEKFLSSNI--TSKTVYHHVTCATDSENIRVVFNSCKDTILRNNLRTSGFM 636
            RM EAI+LF+EIC N +F  SS++LFLNKKDLFAEKI VKDI  VP++SD++G C   FD GV+YF+  FL  N     K +Y+HVTCATD++N+ VV N+CKD I R NL+ SGFM
Sbjct:  240 RMIEAIQLFKEICNNKFFANSSMLLFLNKKDLFAEKIWVKDIKGVPQFSDYKG-CLGDFDAGVDYFVNLFLGVNDRPNEKIIYNHVTCATDTKNVEVVMNACKDIITRGNLKDSGFM 355          
BLAST of mRNA_C-tenellus_contig11759.1.2 vs. uniprot
Match: A0A7S2BI98_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BI98_9STRA)

HSP 1 Score: 131 bits (329), Expect = 2.570e-31
Identity = 58/113 (51.33%), Postives = 83/113 (73.45%), Query Frame = 1
Query:  298 RMGEAIELFREICLNPYFERSSIILFLNKKDLFAEKIPVKDISTVPEWSDFRGPCTFDKGVNYFLEKFLSSNITSKTVYHHVTCATDSENIRVVFNSCKDTILRNNLRTSGFM 636
            RM EA++L+ E+  N YFE+SS++LFLNKKDLF EKI    I   P+++D+ G   +  G +YF+EKF   N T +  Y+H+TCATD+ N+++VFN+CKD IL+NNL+ SGF+
Sbjct:   74 RMKEALDLYDEVSNNRYFEKSSMLLFLNKKDLFEEKIAKVPIQDTPDFADYTGGADYKAGCDYFIEKFRQLNKTDREFYYHLTCATDTSNVKMVFNTCKDIILKNNLKDSGFL 186          
BLAST of mRNA_C-tenellus_contig11759.1.2 vs. uniprot
Match: D7FP05_ECTSI (GPA1, alpha subunit of a heterotrimeric G protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP05_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 1.070e-30
Identity = 69/115 (60.00%), Postives = 83/115 (72.17%), Query Frame = 1
Query:  298 RMGEAIELFREICLNPYFERSSIILFLNKKDLFAEKIPVKDISTVPEWSDFRG-PCTFDKGVNYFLEKFLSSNIT-SKTVYHHVTCATDSENIRVVFNSCKDTILRNNLRTSGFM 636
            RM EA++LF EIC N +F  SS+ILFLNKKDLFAEKI   DI +V +W+DF G P   + G  YFL  FL  N    + VYHHVTCATD+EN+  VFNSCKD ILR+NL+ SGF+
Sbjct:  240 RMTEAMDLFNEICNNRFFSESSMILFLNKKDLFAEKIQRVDIKSVEKWADFTGEPRDEEAGKAYFLSLFLKVNQNPEREVYHHVTCATDTENVNFVFNSCKDVILRSNLKDSGFV 354          
BLAST of mRNA_C-tenellus_contig11759.1.2 vs. uniprot
Match: A0A812ZWS0_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812ZWS0_SYMMI)

HSP 1 Score: 129 bits (325), Expect = 1.150e-30
Identity = 65/117 (55.56%), Postives = 85/117 (72.65%), Query Frame = 1
Query:  298 RMGEAIELFREICLNPYFERSSIILFLNKKDLFAEKIPVKDISTVPEWSDFRGPC-TFDKGVNYFLEKFLSSNITSKT--VYHHVTCATDSENIRVVFNSCKDTILRNNLRTSGFMD 639
            RM EA++LF EI  N +F +SSIILFLNK+DLF  KI    IS    ++D+ GP   +D GV YFL+KF++ N +     +YHHVTCATD++N+RVVF++CKD ILR NL+ SGFMD
Sbjct:   79 RMVEALDLFDEIINNAFFRKSSIILFLNKRDLFEMKIKTTPISDTAFFADYSGPPGDYDSGVEYFLKKFMARNKSGADHQIYHHVTCATDTKNVRVVFDACKDIILRENLKNSGFMD 195          
BLAST of mRNA_C-tenellus_contig11759.1.2 vs. uniprot
Match: A0A485L3B6_9STRA (Aste57867_14988 protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A485L3B6_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.180e-29
Identity = 68/115 (59.13%), Postives = 82/115 (71.30%), Query Frame = 1
Query:  298 RMGEAIELFREICLNPYFERSSIILFLNKKDLFAEKIPVKDISTVPEWSDFRGPC-TFDKGVNYFLEKFLSSNIT-SKTVYHHVTCATDSENIRVVFNSCKDTILRNNLRTSGFM 636
            RM EAI LF EI  N +F  S++ILFLNKKDLF EK+   DI ++  + DF G    FDKGV YFL KFL  N    K +YHHVTCATDS+N++VVFN+CKD IL+ N+R SGFM
Sbjct:  239 RMIEAITLFDEIVNNRFFSNSAMILFLNKKDLFEEKVKKIDIKSIEVFKDFPGGLGDFDKGVTYFLSKFLEMNRQPEKEIYHHVTCATDSQNVQVVFNACKDIILKQNIRGSGFM 353          
BLAST of mRNA_C-tenellus_contig11759.1.2 vs. uniprot
Match: A0A7S2BLN2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BLN2_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.410e-29
Identity = 58/113 (51.33%), Postives = 83/113 (73.45%), Query Frame = 1
Query:  298 RMGEAIELFREICLNPYFERSSIILFLNKKDLFAEKIPVKDISTVPEWSDFRGPCTFDKGVNYFLEKFLSSNITSKTVYHHVTCATDSENIRVVFNSCKDTILRNNLRTSGFM 636
            RM EA++L+ E+  N YFE+SS++LFLNKKDLF EKI    I   P+++D+ G   +  G +YF+EKF   N T +  Y+H+TCATD+ N+++VFN+CKD IL+NNL+ SGF+
Sbjct:  235 RMKEALDLYDEVSNNRYFEKSSMLLFLNKKDLFEEKIAKVPIQDTPDFADYTGGADYKAGCDYFIEKFRQLNKTDREFYYHLTCATDTSNVKMVFNTCKDIILKNNLKDSGFL 347          
BLAST of mRNA_C-tenellus_contig11759.1.2 vs. uniprot
Match: T0QTL4_SAPDV (Uncharacterized protein n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0QTL4_SAPDV)

HSP 1 Score: 130 bits (328), Expect = 2.200e-29
Identity = 69/115 (60.00%), Postives = 83/115 (72.17%), Query Frame = 1
Query:  298 RMGEAIELFREICLNPYFERSSIILFLNKKDLFAEKIPVKDISTVPEWSDFRGPC-TFDKGVNYFLEKFLSSNIT-SKTVYHHVTCATDSENIRVVFNSCKDTILRNNLRTSGFM 636
            RM EAI LF EI  N +F  S++ILFLNKKDLF EKI   DI +V  + DF+G    F+KGV YFL KFL  N    K +YHHVTCATDS+N++VVFN+CKD IL+ N+R SGFM
Sbjct:  240 RMIEAITLFDEIVNNRFFGNSAMILFLNKKDLFEEKIRKIDIKSVEVFKDFQGGLGDFEKGVTYFLSKFLEMNRQPEKEIYHHVTCATDSQNVQVVFNACKDIILKQNIRGSGFM 354          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11759.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKL8_ECTSI1.010e-4171.17GPA2, alpha subunit of a heterotrimeric G protein ... [more]
A0A6S9GNU7_HETAK4.760e-3561.21Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2XUR0_9STRA1.890e-3362.93Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7U751_9STRA2.390e-3159.83G-protein complex alpha subunit n=1 Tax=Nannochlor... [more]
A0A7S2BI98_9STRA2.570e-3151.33Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
D7FP05_ECTSI1.070e-3060.00GPA1, alpha subunit of a heterotrimeric G protein ... [more]
A0A812ZWS0_SYMMI1.150e-3055.56Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A485L3B6_9STRA1.180e-2959.13Aste57867_14988 protein n=6 Tax=Aphanomyces TaxID=... [more]
A0A7S2BLN2_9STRA1.410e-2951.33Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
T0QTL4_SAPDV2.200e-2960.00Uncharacterized protein n=2 Tax=Saprolegniaceae Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11759contigC-tenellus_contig11759:621..5001 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LKL8
PFAMsG-alpha
Model size2555
Max annot lvl2759|Eukaryota
KEGG koko:K04630
KEGG Pathwayko04015,ko04022,ko04024,ko04062,ko04071,ko04261,ko04360,ko04371,ko04540,ko04611,ko04670,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04730,ko04914,ko04915,ko04916,ko04921,ko04923,ko04924,ko04926,ko04934,ko04971,ko05012,ko05030,ko05032,ko05034,ko05133,ko05142,ko05145,ko05200,map04015,map04022,map04024,map04062,map04071,map04261,map04360,map04371,map04540,map04611,map04670,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04730,map04914,map04915,map04916,map04921,map04923,map04924,map04926,map04934,map04971,map05012,map05030,map05032,map05034,map05133,map05142,map05145,map05200
KEGG ModuleM00695
Hectar predicted targeting categoryother localisation
Exons4
Evalue4.7e-48
EggNOG OGsKOG0082@1|root,KOG0082@2759|Eukaryota
Ec32 ortholog descriptionGPA1, alpha subunit of a heterotrimeric G protein
Ec32 orthologEc-05_001890.1
DescriptionG-protein beta/gamma-subunit complex binding
Cds size450
COG categoryV
BRITEko00000,ko00001,ko00002,ko04031,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11759.1.2prot_C-tenellus_contig11759.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11759 2534..4809 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789193.5771518-UTR-C-tenellus_contig11759:620..25331680789193.5771518-UTR-C-tenellus_contig11759:620..2533Choristocarpus tenellus KU2346UTRC-tenellus_contig11759 621..2533 -
1680789193.630576-UTR-C-tenellus_contig11759:4809..50011680789193.630576-UTR-C-tenellus_contig11759:4809..5001Choristocarpus tenellus KU2346UTRC-tenellus_contig11759 4810..5001 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789193.5895483-CDS-C-tenellus_contig11759:2533..25551680789193.5895483-CDS-C-tenellus_contig11759:2533..2555Choristocarpus tenellus KU2346CDSC-tenellus_contig11759 2534..2555 -
1680789193.6033056-CDS-C-tenellus_contig11759:3077..31991680789193.6033056-CDS-C-tenellus_contig11759:3077..3199Choristocarpus tenellus KU2346CDSC-tenellus_contig11759 3078..3199 -
1680789193.611682-CDS-C-tenellus_contig11759:3672..37591680789193.611682-CDS-C-tenellus_contig11759:3672..3759Choristocarpus tenellus KU2346CDSC-tenellus_contig11759 3673..3759 -
1680789193.619877-CDS-C-tenellus_contig11759:4590..48091680789193.619877-CDS-C-tenellus_contig11759:4590..4809Choristocarpus tenellus KU2346CDSC-tenellus_contig11759 4591..4809 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11759.1.2

>prot_C-tenellus_contig11759.1.2 ID=prot_C-tenellus_contig11759.1.2|Name=mRNA_C-tenellus_contig11759.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=150bp
MHSLTDILRQLGNFIHTHAATLLSCPSTGWMVNVFRMGEAIELFREICLN
PYFERSSIILFLNKKDLFAEKIPVKDISTVPEWSDFRGPCTFDKGVNYFL
EKFLSSNITSKTVYHHVTCATDSENIRVVFNSCKDTILRNNLRTSGFMD*
back to top

mRNA from alignment at C-tenellus_contig11759:621..5001-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11759.1.2 ID=mRNA_C-tenellus_contig11759.1.2|Name=mRNA_C-tenellus_contig11759.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4381bp|location=Sequence derived from alignment at C-tenellus_contig11759:621..5001- (Choristocarpus tenellus KU2346)
CTGAGGATGTTTTTGCTGCCGAAGTGGTGGCGTTTGGTGGGGAAGAGTGA TAGTGTCTGATAGTTGCTGTGGTAGAGGAGAGGACTTTGTTACTTTGTTT GAGAAGTGTGCTAGACAACCTCTTCGCAAGAAAAATGTGGAAAGCTGGTG CTTCATGAGAATAAAGGAACCCACCCTACAACCCCAGGTATCATGCATTC GTTAACTGATATCCTGAGACAATTGGGCAACTTCATACACACGCACGCTG CTACCCTCTTATCTTGTCCTTCAACTGGATGGATGGTTAATGTTTTCAGG ATGGGCGAGGCAATAGAGCTCTTCCGTGAGATATGTCTTAACCCCTACTT CGAGAGGTCGAGCATCATCCTTTTCCTCAACAAGAAGGACCTGTTTGCAG AGAAAATTCCTGTGAGAAACTCCCCACTGCCCCTGTCATTGATGAATGTC CTCAATGCAAACTCCATCTGGTTGAACTTTTTTTGCTGAGGGGAGTCGAA GCAATTAAGATACCCTCCACAACAGCACGATACGATAAAGTTCTGATTTT GTGCCAGTGTCTTTTATTTTTTCAATGTGTTTTTTTCTTCTTACGATGCA GTAGAATTTTATTTTGATTGCCCCCAAGCATTCTGCGTGCAGTTTTTTTT TCCTCTGCGGAAAAGGGTTTGAGAGAAATGGACTTGCAAGAAAAAAAATA ATGAAATTTGATATCGGTGGTGTCATGCCTTTTCATTGGGGTGTGATATA CTCTCTCCTCACCCCCCAATGAAAAGGTATGACACCACCGATATTAAGAG AGAGAGAGAGAGAGAGAGTATGGAGAGAGTATGCAGGTAATGTCTGTAAT TGCTTATTCTCATGGCTTTTCGTCTGTGAAGGGAACTGTTTATGGCCTGG TTCACCCACTTGGCCGACCCATCATCTTCTGACATGATGGTCCAGGGGCT TCAGACATTTCAGTGAGATTGAACTAGTCGGTCTTTTTTTTTTTTACTTC AATGAATATATTATTTCAATATCATTTTGAAACCTACATGAATTTAGTAC AATTCAGGGGTTGACCTGATGTGTTTTGAACAGGTGAACTAACCAAGTGA TGTCTCTGTCAGGGTTGGCCCACGGCTGCCAAAGTAGTTCAATGAGGCTG GGCCTCGAATTGGTTATTCTCTTGGGTTTTGCTTCTGTTGGCTGGGATGA AGTCGACCAACCATTGGAGGCGTTTAACCCCTACCCTTACAGGTAAAGGA TATTTCGACTGTGCCAGAGTGGTCTGACTTTAGGGGCCCATGTACCTTCG ACAAAGGTGTCAACTACTTTCTGGAAAAGGTGGGTGGTTTTTTAGGAGTG GGGTGGACAGATGGGGGCAATTACAGCTGTTAATTGTTGCTAGTTAATAG CAACGGTGATTTCAAGTACTTTTTTTTATGGATTGTGAAAGACTGACTGG TAATGTTTGTATTATCGGGTTTTTTGTTTGAATGCATTTGACTTTCAGCA ACACTCTGTCCCATGACCGTCAATGTTTTATGATTCAACATTTTAGGGTT GGTATCACATTGGTTCTCCAGCACAGGGGTTACGTGCTGCCTTCCTCCTG TATGGGATTGTAGTCTGAGGCAACTTGAGTTATTTATGTCAGGCTGGAAT CTGGAAGCCTTTCCCTTATCCGTCCCCTTCACAAATACCTCCTCTTATCC AAGTGAGCTTGGATGTCTTCCTAAACTGAGCCAGCCTGCGTGTAACGCTC TCCACATTGCGGGTGCCGCTGTTTATTTCCAATGTTGCATTATGCTATGC AGTTTTTAAGCAGCAATATCACCTCCAAGACTGTGTACCACCACGTGACA TGTGCCACTGACAGTGAGAACATCCGTGTGGTGTTCAACTCTTGTAAGGA CACCATACTTCGCAACAACCTCAGGTTAGAAATGTAGGTCACCCTTTCCC CTTCCCCCCATGCTGATGATGTCTTGTTCTGCTTATGTTCTATAATGATG CTGGGGGGGAAGGGGAGAGGGGTGGGTCACGTGTGTGGGCTTGGTCTGTT TTAAATGGGAAGTGTTTCAGCAGAAGAATGCACTCTAAGGATGCTGAGGG GGAGGGGAGAGGGGGGGGTTAAGGTGTGTGGGTTTGTTTTAAACGGGAAG TGTTTATATAATGCACACTCTGTCCCCTTGTGTGAGAACTGATAGCTGTA ATATCCGTGCTAAAATTGCTCTTGTGCTGGTATGACGTGAAGCTTCACTT TATGCTGTAGAAGTTTTGATCAGAGGTTAGTTACTTTCAATTATTGTTAC AATTTTTGTATTTTTTTTTATGGCACTTTTTTGAGGAGGAAATGGGGCAG ACTTTAGAGTATGCCAAGTGTAACCTTTCTTTTCTTCTCCTTGCCTTGTC ACCCAATTATATTCTTGCTCTACACTGATTGGACGAATTCATGCAGGACA AGTGGGTTCATGGACTAATCATGAGCATGGTTTTAGATACCTTGCAGAGG AGGAAGAGTGGCAGGGGAAGAGGGTGGGTGTTTGTATGTGGAGAGGAGCA AGAGGTTCTATGGAAAAAAGATTATGGGGAATATTGGAGGAGATGGGTCC AGAGAGACGAGAAAGGAGCTGATTACTGTAGTCAGAGGAATTCGATGTTT GAGCTGAGGCAGGAGGGCCTTAAGGCAGTAAGGAGTAAGACTGCAGTGGT GTGTGGCTGGAGAAGTATTTTCCTGGATGGTTGATCAAGGGGAAGGGAGA GGGACAATTTTTTTTGCCAGAACAAAGTTATGTTTGAGTGGAGGGGTTCA GATCATGTTACTCCTGGAGACTCCAAAATTGGAAACGTTATGAATCTATG GAACAGCTGCCAGCTGGCTGCGCATGGATCAGACTTTCCTGATTGTTTCT GTGCAAATGTTTTCATGTCCTTTTGTTGCTATTGACTTTCCCTTCAAGTG GTGTCTGCCCTTTTCATTGGCTTGTTGGTATTACTGCCTACGTATGGAGC ACCTTCTCACTTAGCAATGTGGTAGTTTGTTGAAGCTATTTCATTTGCGG TTTGATCTACACAGCCCTTTGGGATGGAAAAGTAGAGTGCACTCCGCCAC TGTTTTCTGAAAGGGGGTAGTTTAGTGAGTCATTGTGAGCTTTGACAGCA TTGGCTGGGTTCAAGACCTGACCAACCTTTTTTTGACATGGTCTTTTGTA CTTTTATGGTAGTTGTGTGGGAGGGTACTTGTTCTGGTTTGTTTTGTATA TTGTACCTGTTGGTGTGTACCTTTGATGTTTTGTTGTATTCTGATTACGT TTGCTGTCCTTTCGTACATCCAATGCGTTACCTCGTCCTTAGCGTTCCCT ACGCATTGTCTTACCTCTTGCTTTTTGTTTGCCCTGATTGGCATGCACGG ACAGGGGGTGGGGGTTGTAGTTGGGCTGTGTCTGCTGAAATGTTCGTGGG ATAAAAGGGAGAGGGGGAGAGGTATGTGGAAGAAATTGACCATTATTTGT ATCTTTGTGGCATTTCACAATCTTTTTTCTGTTCTACAAGTAGGATACTT GCATGATGCAAAGAAGCAAAGAAAGGCTTTAGTTAGAGGGCCAGTTTGCC TTTTATTGGCAGAGCGTCAGATAGGCTATTATTTTCCCCTCCTTTTTTTC ATCTCTTTCTTTGCCTGGAAGGCCATACTGTGGACATTGGGAATGTAGTC ATGTGGTATGCTAGGCAGCTTGATTTGGGGATGAACACAAACTGCATCAG GATACGTGCCCCCCAGTCACTATTCCTTCCTGATCATCACCCTTGCCCTG AGATACCAGGGCACCTGCGGGTGTACTGATGGCAACCACACTTAATTGGT AAAACTAGGTTGCAGAATGACTCGTAGATAGGTCCCTAGATGAGTCCCAA ATGTGTTACACATACTTTTTTGTGTTGAATATATGTTCTGAACAGGCCAC GATCTAAGTATGGTGTTATGATGCTGGATGGTGGCTCTTTTGTGTATGTA GGTGTGTTTTTGTTTGTTTGCGCACTTACTTACCATACTCTTACTGTAGC AAAAAGAGAGAGAGAGAAACAAGAATGCAGCTGCTCCCCAAGGTGCATTT CCTTCCCCACACACCTCTGCTCCATATCTCATTCACCCTCCAAGTATCAC CATTCCTCGGACAGGAACGAGCGAACCAAGTTTTATACTTGAAAGTACAG TAAGAGAATAAGTAGTTCATTTGAGCTGTCTTTTTTTCTTCTGTTATTGG TTAGCATTTTGTCGGGTAATGCCTAAGAACCCATTTGCCCTGAAACATTC ATTGTCGAAAACTCCTTTGGTCATTTGCTCAAATAATTTCCTTTGAAGCA ACCAACTTTATCAAGTAATATTGTTTTGCAC
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig11759:621..5001-

>mRNA_C-tenellus_contig11759.1.2 ID=mRNA_C-tenellus_contig11759.1.2|Name=mRNA_C-tenellus_contig11759.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=450bp|location=Sequence derived from alignment at C-tenellus_contig11759:621..5001- (Choristocarpus tenellus KU2346)
ATGCATTCGTTAACTGATATCCTGAGACAATTGGGCAACTTCATACACAC
GCACGCTGCTACCCTCTTATCTTGTCCTTCAACTGGATGGATGGTTAATG
TTTTCAGGATGGGCGAGGCAATAGAGCTCTTCCGTGAGATATGTCTTAAC
CCCTACTTCGAGAGGTCGAGCATCATCCTTTTCCTCAACAAGAAGGACCT
GTTTGCAGAGAAAATTCCTGTAAAGGATATTTCGACTGTGCCAGAGTGGT
CTGACTTTAGGGGCCCATGTACCTTCGACAAAGGTGTCAACTACTTTCTG
GAAAAGTTTTTAAGCAGCAATATCACCTCCAAGACTGTGTACCACCACGT
GACATGTGCCACTGACAGTGAGAACATCCGTGTGGTGTTCAACTCTTGTA
AGGACACCATACTTCGCAACAACCTCAGGACAAGTGGGTTCATGGACTAA
back to top