mRNA_C-tenellus_contig11756.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11756.1.1
Unique NamemRNA_C-tenellus_contig11756.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11756.1.1 vs. uniprot
Match: D8LRJ6_ECTSI (Cyclin H n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRJ6_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.080e-21
Identity = 69/154 (44.81%), Postives = 89/154 (57.79%), Query Frame = 2 
Query:  329 MDFSVSTHRRHWLFNKSTLREMLEETTFLASEACAAGKVPEVARSVALKSSATDSSVSDTNVNEGGDSADKGTLEA--EAAAP-------------------RKAKRGLVERASPLLSVEEEGLIKQFYERKIQETCGRNAKEKDLRRSDKVQV 727
            M+F+ STHRRHWLF K TLRE+ EET  LA+EACAAG  PE +RS A+    T S+  D +        ++GTL+   E   P                   +K        A PLL+VEEE L+K +Y +KIQETCGR++ ++DLRRSDKVQ 
Sbjct:    1 MEFNSSTHRRHWLFTKGTLREVQEETAKLAAEACAAGTPPEGSRSFAV----TRSTAGDKSGGRATTDNEEGTLDVKGEGGVPATDTGEGXXXXXXXXXXSGKKRPAPTASSAEPLLTVEEECLVKNYYAKKIQETCGRDSADEDLRRSDKVQA 150
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11756.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRJ6_ECTSI1.080e-2144.81Cyclin H n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11756contigC-tenellus_contig11756:211..3764 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1152
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptioncyclin H
Ec32 orthologEc-12_000030.1
Cds size420
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11756.1.1prot_C-tenellus_contig11756.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11756 615..3436 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789193.4808588-UTR-C-tenellus_contig11756:210..6141680789193.4808588-UTR-C-tenellus_contig11756:210..614Choristocarpus tenellus KU2346UTRC-tenellus_contig11756 211..614 -
1680789193.540017-UTR-C-tenellus_contig11756:3436..37641680789193.540017-UTR-C-tenellus_contig11756:3436..3764Choristocarpus tenellus KU2346UTRC-tenellus_contig11756 3437..3764 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789193.4892752-CDS-C-tenellus_contig11756:614..7431680789193.4892752-CDS-C-tenellus_contig11756:614..743Choristocarpus tenellus KU2346CDSC-tenellus_contig11756 615..743 -
1680789193.4996219-CDS-C-tenellus_contig11756:1054..11311680789193.4996219-CDS-C-tenellus_contig11756:1054..1131Choristocarpus tenellus KU2346CDSC-tenellus_contig11756 1055..1131 -
1680789193.5096326-CDS-C-tenellus_contig11756:2603..26941680789193.5096326-CDS-C-tenellus_contig11756:2603..2694Choristocarpus tenellus KU2346CDSC-tenellus_contig11756 2604..2694 -
1680789193.5197127-CDS-C-tenellus_contig11756:3108..31731680789193.5197127-CDS-C-tenellus_contig11756:3108..3173Choristocarpus tenellus KU2346CDSC-tenellus_contig11756 3109..3173 -
1680789193.5294478-CDS-C-tenellus_contig11756:3378..34361680789193.5294478-CDS-C-tenellus_contig11756:3378..3436Choristocarpus tenellus KU2346CDSC-tenellus_contig11756 3379..3436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11756.1.1

>prot_C-tenellus_contig11756.1.1 ID=prot_C-tenellus_contig11756.1.1|Name=mRNA_C-tenellus_contig11756.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=140bp
MDFSVSTHRRHWLFNKSTLREMLEETTFLASEACAAGKVPEVARSVALKS
SATDSSVSDTNVNEGGDSADKGTLEAEAAAPRKAKRGLVERASPLLSVEE
EGLIKQFYERKIQETCGRNAKEKDLRRSDKVQVGQLGIC*
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mRNA from alignment at C-tenellus_contig11756:211..3764-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11756.1.1 ID=mRNA_C-tenellus_contig11756.1.1|Name=mRNA_C-tenellus_contig11756.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3554bp|location=Sequence derived from alignment at C-tenellus_contig11756:211..3764- (Choristocarpus tenellus KU2346)
GTGCCTTCGACGGTGTCGCCAAGGTTGGAACTCTTGTTCGCATCTCCTTG
ATCCTAAACTTCATCAAGTACTGAAAAACACCATATCCCATGATTCAAAG
GAGGATCCGCCTTTCTTAAACAATATCTCCTGCTGATACTGCCCCACAGA
AACATCTAGACGTTGAGGACAAAGTAAAACCTGCCTCAGCATTCACGAAG
AAAAAATCGTCTCTTCACCCCATTGAAGTTTTGTGGGTACTGACACAAAT
TGAATGGTAGGATCAAGGATCGACCTACACGTGCTCGATGAGAGCTTATA
GAGCAACGTCAAAGATTTAAGCTTAAGGATGGACTTCTCTGTCTCGACGC
ACCGTCGACATTGGCTTTTCAACAAATCTACCCTCAGTGAGTCTTGTGAG
GGAAGAACAAGAGGATGGCCTGCATTGGTACACTTAGACCCACCTTTCTC
TCTTCTAGCCGTGTAATTATCCAATACATCCTCTTCAGTTCGATGAACGC
CACTTCCTCGTGCGGTCCGCAGGTGCCGCCTCTCCGTTCTCACTCAACAC
CCACTCCCTCCCCTGCGACGATGTTCGTTCTGCTGTATTAGGGGAGATGC
TGGAGGAGACAACGTTTCTGGCGTCGGAGGCCTGCGCTGCAGGAAAGGTC
CCAGAGGTAATGCAAGTTAGACCCTATGGTGAGGGAGCTTGATATGTCAC
GGAGGTGTCCCCAGATCTATAAATGGTGTCATCACGAATAGTCAAACTGC
ACTCGTCTCTTAGACTTGGTTCAAAACTGCCGGTTATTGCACCAATTACA
GCTTTTCGTCTTTATCCAACCCTCTTGGATGTGTATGCTAAAACCAAGAC
CTATGAAGCAATGCTGTAGCGGTTATTCTCAGTCCTCTGCATCTATATTT
TCCAATTGCACCTCTACTTCACTCAATCAAGGCCCTTTGCAGCTTCGTTC
TTCCTGACATACATTTCTCCCCTTCCATTTCCCAATTCTTCAAGGTCACC
CCAGACATCTGGACTTGCACCTACCAACGTACATTTTGCCCGCCTCTTCC
TCTGAAACACTTCTTACAAGGTGGCCCGGAGTGTGGCCCTGAAATCTTCT
GCTACTGACTCTTCGGTGAGTGATACAAACGTCAACGAAGGGGGAGACAG
TGCTGACAAAGGTGGGTGAAAGAAGCAATGTAAGGTCCCTGGCTATGTCA
ATATTGCTTTGTCCATAGGCAGCTCCCCTCTGCTGATGGTGGCAAACCAT
GAGGGAGTGAGAAAGATTATTACAAGATTTATGTAACCCATTTATCTTCC
TTGTGATTGAATATGTGGCATTCCATTGTGTACGCTCAGTTCTTGCTCAG
AGCTCTTGTTTGTTCACCTTGGTTTCATTTGGATTGGGAAATGGTTAAAA
CAAGACTAGTAGCGTGGGTGATTTGTGGACAGTTACCAGCAGGTTGGCGG
TGACTACTATGGCAAGCTCTCTTGATGCAATGGGACATGCTGCAAGCACA
TCAAGACTTCTACAATAGGAACATAGTATATGCAAATCTTGAAACGCTCT
TCCAGCTGTCCGAATTTCATTATTTCCTTTAATGAACTCTTCACCAAAGA
TCATGATGGCGGTAGCATTTTGAGGTAGTATTGAAAATATGATAGCGTTT
GTCCTTTGTACTACTTGCAGACTATTGCATACTATCTTGTAGATGTTTTT
CCATCTACAAGAGCAGTATCGTGAAGCAGGTGCCCTGTCTGATCCATTTG
CCAGACTCAAGGCTCCTGCGGGTTAAACATAAACATGCACACAGAAGCTC
CAATGTACAATATGTTGACACACTTGTAGATAGATATCAGTCACCGCAGG
GGTACAAATATACCTCACACTGCTTTGAACATGCTTGTTGAAGGTAAGGG
AGTGTTCAGTCCATTGCTCTTTTCGACCAAATGGATGAAACGTGCGTTCC
CCATTGTTCCTGTAGTTCTCAGGCTGTTGCATAAGGGCATACATCCACCC
CCTCATGAGCAGCCGCTAACGAGGATGATATAACACTTTTAGTTGTTGGG
CAGTGTTCTCTAGCTGTTGGAAGGTATGGTGCATGGAGGGAGAGATTACC
CTAACGTAAAGAATAGCCATACTCTTTCTTGTCTTTGCCACAACCCAAAC
GGTTGGAGGCCTGCCTTCGCTGTGACTGTTGAGATTTAGGCTTCGATGCC
CGCCAAGGGGAGAATGAGGTATTTAGTGCTCATAGATATGCTCATAGAGT
TGAAATTACTGAGAGGGTTGTGTATTCTGGCTTTTTTGAGTTTCGATTGG
GGGGGGGGGAGGGGGGGGGTCAACTCTGCTTGAAGGAGATGAAGACATTC
AAGAAAGGTCGTTGATAAGAATAGCTTGCTTCTGCTGATTGGATGAACCC
ACAAGACATCAAAAATGTAATACACAGGTGGGGAATACCATGTGTCCTAA
AAAAACGTTTAATCAGAACGTCAGAGGGGCGCTTCAAACTCAATGGCATG
CATACCCCTCTTGGGTCACTTCAACTTACAAGAAGCCTTTTGCGTTCCTT
TTGCTTCTTCCTTCCTGTGCCTCTGGTCTTGTTAATTGTCTACGGTATTT
TGAATTGGGATGTACTGATGCCTTCCACAATAGGGACGCTGGAGGCTGAA
GCTGCTGCTCCCCGCAAAGCAAAGAGGGGCCTGGTGGAGAGGGCATCGCC
ACTACTGTCGGTTAGCAGTTTGTTAGTATTAGTACTAATGATATTAATGC
AGTGTCACACTTGCAAGTGTCTTGAATATGATGATAAGTGGCCCTTTGAT
GTACCAAGTGACTTGCTTGCGCCGTTCAGCTTTTTTTTTTAAGTCTTACT
TCAACATCAGTGCTGATAACTCTGGAAAACAAAGGTCTACAAAAAGAAGT
GAGTGCATGGAGGAATGGGTGTTACTGTAGTAATCTTGATTCATGTCTGA
CTGATGGGCTTTGAACCAGGGCATTTTTGTGTGTATGTTTGTATTATGTT
TGTGTGTGTGTGTGTGTCTAGGTGGAGGAAGAAGGACTGATCAAACAGTT
TTATGAGAGGAAGATCCAGGAGACATGTGGAAGGAATGCTAAGGAAAAGG
ATCTCAGACGATCAGACAAGGTCCAGGTAGGACAGCTCGGAATCTGTTGA
GGGGGTGGTATTTAATGGGGGGAGGGCGAGTTGAATCGTGTGCTCTTGTG
TAGGGTTAGGGTTAGGGTCACAAATAAGCGCAATGTTGTATTTGCATACT
CCACCCTTCAGATGTCATGGCGGGGTAAGGTGTGGGGAATTGGGCTCTGT
GGTGCCCGGTGCCACCACATAGTGTTGGAGGGTCGTGGGGTCGCCAGTGA
ATTGTAATGGACGAGTAGAGTGCGCATAGAGGAATCAGGAATGTTACAGA
CTGCGTTGGGCCCAACAATGTGGTACAGTTGATATCATTCATCTGTTGTG
ACATTGTCTATTGTGACCTGTACGCTTGGGAGGGTACACTGCAGGAGAGT
TTCCTTTCTGTGACAGTTTAAGGCATAGCACACGTGCTGAGTCTCCTAGG
AAAG
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Coding sequence (CDS) from alignment at C-tenellus_contig11756:211..3764-

>mRNA_C-tenellus_contig11756.1.1 ID=mRNA_C-tenellus_contig11756.1.1|Name=mRNA_C-tenellus_contig11756.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=420bp|location=Sequence derived from alignment at C-tenellus_contig11756:211..3764- (Choristocarpus tenellus KU2346)
ATGGACTTCTCTGTCTCGACGCACCGTCGACATTGGCTTTTCAACAAATC
TACCCTCAGGGAGATGCTGGAGGAGACAACGTTTCTGGCGTCGGAGGCCT
GCGCTGCAGGAAAGGTCCCAGAGGTGGCCCGGAGTGTGGCCCTGAAATCT
TCTGCTACTGACTCTTCGGTGAGTGATACAAACGTCAACGAAGGGGGAGA
CAGTGCTGACAAAGGGACGCTGGAGGCTGAAGCTGCTGCTCCCCGCAAAG
CAAAGAGGGGCCTGGTGGAGAGGGCATCGCCACTACTGTCGGTGGAGGAA
GAAGGACTGATCAAACAGTTTTATGAGAGGAAGATCCAGGAGACATGTGG
AAGGAATGCTAAGGAAAAGGATCTCAGACGATCAGACAAGGTCCAGGTAG
GACAGCTCGGAATCTGTTGA
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