mRNA_C-tenellus_contig11755.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11755.2.1
Unique NamemRNA_C-tenellus_contig11755.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11755.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11755contigC-tenellus_contig11755:3534..3972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size152
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size132
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789193.3040633-UTR-C-tenellus_contig11755:3533..35531680789193.3040633-UTR-C-tenellus_contig11755:3533..3553Choristocarpus tenellus KU2346UTRC-tenellus_contig11755 3534..3553 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789193.318791-CDS-C-tenellus_contig11755:3553..36031680789193.318791-CDS-C-tenellus_contig11755:3553..3603Choristocarpus tenellus KU2346CDSC-tenellus_contig11755 3554..3603 +
1680789193.3282437-CDS-C-tenellus_contig11755:3890..39721680789193.3282437-CDS-C-tenellus_contig11755:3890..3972Choristocarpus tenellus KU2346CDSC-tenellus_contig11755 3891..3972 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11755.2.1prot_C-tenellus_contig11755.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11755 3554..3972 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11755.2.1

>prot_C-tenellus_contig11755.2.1 ID=prot_C-tenellus_contig11755.2.1|Name=mRNA_C-tenellus_contig11755.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=44bp
MYDLDPEMQFSKLRATRDNPLPVLLGLRRGVAVISEDTISSLSK
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mRNA from alignment at C-tenellus_contig11755:3534..3972+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11755.2.1 ID=mRNA_C-tenellus_contig11755.2.1|Name=mRNA_C-tenellus_contig11755.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=439bp|location=Sequence derived from alignment at C-tenellus_contig11755:3534..3972+ (Choristocarpus tenellus KU2346)
AGCTCCCATCTCAACCGCTGATGTATGATCTGGACCCTGAGATGCAGTTC
AGCAAGCTTCGTGCCACAAGGTAAAAAGAGGAAAATGAAGAGTATTATTT
TCTAAGTTGATTTGATTTGAGACGGATCTCATGCAAATCACACCCAACTT
TCTTACTCCAAAACTTGAAGCTCTTCAGTCATCTGATCCTGCTCTTAATG
AGGTGTAACCCTTGATGGCCCTGTGCAGGGTGGTCTACGGTTTGTGGACA
ACCTTCCTTGACGTTGTCGCACAAGATAGGCCGCATACTACCACAAAACC
AGAGAAATGCAGCGATCAAAGAGATGAAGGCATCACAGAGCCTCGGCCCA
CACACAGGGACAACCCACTGCCAGTCCTCCTCGGTCTGCGCAGAGGTGTT
GCGGTCATATCAGAGGATACCATCAGCTCACTCAGCAAG
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Coding sequence (CDS) from alignment at C-tenellus_contig11755:3534..3972+

>mRNA_C-tenellus_contig11755.2.1 ID=mRNA_C-tenellus_contig11755.2.1|Name=mRNA_C-tenellus_contig11755.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=132bp|location=Sequence derived from alignment at C-tenellus_contig11755:3534..3972+ (Choristocarpus tenellus KU2346)
ATGTATGATCTGGACCCTGAGATGCAGTTCAGCAAGCTTCGTGCCACAAG
GGACAACCCACTGCCAGTCCTCCTCGGTCTGCGCAGAGGTGTTGCGGTCA
TATCAGAGGATACCATCAGCTCACTCAGCAAG
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