mRNA_C-tenellus_contig11755.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11755.1.1
Unique NamemRNA_C-tenellus_contig11755.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11755.1.1 vs. uniprot
Match: D8LHE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE0_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 3.780e-24
Identity = 55/139 (39.57%), Postives = 80/139 (57.55%), Query Frame = 3 
Query:  345 VGRPVHAIIEENRKTELCRNWEERKECPFGENCAFAHGTQELKYRTPREMESAGRIPDASKYRCYPCLTWVAXXXXXXXXXXXXIHDPRIKGPTDAWLYSDCHPNSAPPETSEK------RPMFFFPDMELINIENGKL 743
            +G+P   ++  NRKTE+CRNW++ +       CAFAHGT EL+ ++  +ME  GRIP+ASK+RCYPCLTW+             IHDPRI+GPT A+LY      S    +         R +F++PDM   + +  ++
Sbjct:    1 MGKPSLDLVSVNRKTEICRNWQQGRCVAEAWKCAFAHGTHELRRQSLDQMEYTGRIPNASKFRCYPCLTWITTGACPYFSRCVFIHDPRIRGPTAAYLYKHNGNRSHSTRSGGSVGSPLGRDIFYWPDMPRTDADGNEI 139
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BLAST of mRNA_C-tenellus_contig11755.1.1 vs. uniprot
Match: D7FIR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIR3_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 9.790e-19
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 3 
Query:  348 GRPVHAIIEENRKTELCRNWEERKECPFGENCAFAHGTQELKYRTPREMESAGRIPDASKYRCYPCLTWVAXXXXXXXXXXXXIHDPRIKG 620
            G P  +IIE NRKTELCRN+E    C FG+ CAFAHG  ++K++T R++E  GRI DASKY+   C TWVA            IHD R+KG
Sbjct:   27 GIPSSSIIEHNRKTELCRNYENGS-CTFGDRCAFAHGLDDIKHKTLRDLEKEGRIADASKYQACLCQTWVATGTCLYGRRCVFIHDDRVKG 116
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BLAST of mRNA_C-tenellus_contig11755.1.1 vs. uniprot
Match: A0A836CEW5_9STRA (C3H1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEW5_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 5.530e-16
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 3 
Query:  366 IIEENRKTELCRNWEERKECPFGENCAFAHGTQELKYRTPREMESAGRIPDASKYRCYPCL--TWVA 560
            +IE NRKTELCRNW+    C +G  CAFAHG  EL  +T  EME AGRIP+A+++R  PC+  TWVA
Sbjct:    4 VIEANRKTELCRNWQNGT-CLYGGKCAFAHGQSELTVQTLTEMEKAGRIPNAARFRSNPCMASTWVA 69
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BLAST of mRNA_C-tenellus_contig11755.1.1 vs. uniprot
Match: A0A7S3L0M0_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L0M0_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.970e-13
Identity = 38/85 (44.71%), Postives = 48/85 (56.47%), Query Frame = 3 
Query:  384 KTELCRNWEERKECPFGENCAFAHGTQELKYRTPREMESAGRIPDASKYRCYPCLTWVAXXXXXXXXXXXXIHDPRIKGPTDAWL 638
            KTELC ++   + CPFG NC +AHG +EL+     +M  AG I D   YR  PC TWVA            IHDPR++G  D+WL
Sbjct:  207 KTELCMHYANGRPCPFGSNCTYAHGEEELQMTKLVDMHKAGLI-DMETYRTRPCWTWVATGSCPFGKRCCSIHDPRVQGEYDSWL 290
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BLAST of mRNA_C-tenellus_contig11755.1.1 vs. uniprot
Match: A0A7S3Q9Y3_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q9Y3_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 6.250e-12
Identity = 38/87 (43.68%), Postives = 49/87 (56.32%), Query Frame = 3 
Query:  384 KTELCRNWEERKECPFGENCAFAHGTQELKYRTPREMESAGRIPDASKYRCYPCLTWVAXXXXXXXXXXXXIHDPRIKGPTD--AWL 638
            KTELCRN+  R+ C FG+ C +AHG QELK     ++E AG + D   +R +PCLTWVA            +HDPR+       AWL
Sbjct:  423 KTELCRNFNTRRGCQFGDKCNYAHGAQELKLTKLMDLERAGLV-DIEIFRTHPCLTWVATGACPFDTRCIGLHDPRVTSDDHEMAWL 508
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BLAST of mRNA_C-tenellus_contig11755.1.1 vs. uniprot
Match: A0A1Z5KMK2_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KMK2_FISSO)

HSP 1 Score: 58.5 bits (140), Expect = 8.120e-6
Identity = 62/194 (31.96%), Postives = 93/194 (47.94%), Query Frame = 3 
Query:  384 KTELCRNWEERKECPFGENCAFAHGTQELKYRTPREMESAGRIPDASKYRCYPCLTWVAXXXXXXXXXXXXIHDPRIKGPTDAWLYSDCHPNSAPPETSEKRPMFFFPDMELINI--ENGKLCVLPFRRWKETIVSTLSYYSRSVCTHYISLIHQTLSQLLHRRPESIHPIFVFEISRQF*PSSLH*PDILHRY 959
            KTE+C ++   K CPFG  C +AHG +EL+     ++  AG + D   YR  P      XXXXXXXXXXXXIHDPR+ G   +WL         P   ++   M    ++E +N   +N  L   PF      +    S Y + VC   I+ +         R+ +++H I   +++ Q   SS   P+  ++Y
Sbjct:  165 KTEMCIHYMNGKMCPFGSECTYAHGEEELQMTKLWDLHEAGLV-DKDTYRIKPXXXXXXXXXXXXXXXXXXIHDPRVGGTYHSWL---------PQTETQGNTMATDINVEALNQKRQNHILMGHPFGHQFSMVNENWSDYYKLVCN--INYVKNGWVDS-RRQKKAVHAIVKLQVALQMRGSS---PEWQYKY 342
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11755.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LHE0_ECTSI3.780e-2439.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FIR3_ECTSI9.790e-1951.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CEW5_9STRA5.530e-1658.21C3H1-type domain-containing protein n=1 Tax=Tribon... [more]
A0A7S3L0M0_9STRA2.970e-1344.71Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S3Q9Y3_9STRA6.250e-1243.68Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A1Z5KMK2_FISSO8.120e-631.96Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11755contigC-tenellus_contig11755:1455..3473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LHE0
PFAMszf-CCCH
Model size987
Max annot lvl2759|Eukaryota
KEGG koko:K06236,ko:K18753
KEGG Pathwayko04151,ko04218,ko04510,ko04512,ko04611,ko04926,ko04933,ko04974,ko05146,ko05165,map04151,map04218,map04510,map04512,map04611,map04926,map04933,map04974,map05146,map05165
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005938,GO:0044424,GO:0044444,GO:0044464,GO:0071944,GO:0099568
Exons7
Evalue9.74e-26
EggNOG OGsCOG5063@1|root,KOG1677@2759|Eukaryota
Description3'-UTR-mediated mRNA destabilization
Cds size753
COG categoryK
BRITEko00000,ko00001,ko00536,ko03019,ko04516
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11755.1.1prot_C-tenellus_contig11755.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11755 1622..3406 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789193.3563778-UTR-C-tenellus_contig11755:1454..16211680789193.3563778-UTR-C-tenellus_contig11755:1454..1621Choristocarpus tenellus KU2346UTRC-tenellus_contig11755 1455..1621 +
1680789193.4477394-UTR-C-tenellus_contig11755:3406..34731680789193.4477394-UTR-C-tenellus_contig11755:3406..3473Choristocarpus tenellus KU2346UTRC-tenellus_contig11755 3407..3473 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789193.3677354-CDS-C-tenellus_contig11755:1621..18401680789193.3677354-CDS-C-tenellus_contig11755:1621..1840Choristocarpus tenellus KU2346CDSC-tenellus_contig11755 1622..1840 +
1680789193.3786845-CDS-C-tenellus_contig11755:2064..21131680789193.3786845-CDS-C-tenellus_contig11755:2064..2113Choristocarpus tenellus KU2346CDSC-tenellus_contig11755 2065..2113 +
1680789193.3894064-CDS-C-tenellus_contig11755:2261..23191680789193.3894064-CDS-C-tenellus_contig11755:2261..2319Choristocarpus tenellus KU2346CDSC-tenellus_contig11755 2262..2319 +
1680789193.4011788-CDS-C-tenellus_contig11755:2533..25881680789193.4011788-CDS-C-tenellus_contig11755:2533..2588Choristocarpus tenellus KU2346CDSC-tenellus_contig11755 2534..2588 +
1680789193.4118564-CDS-C-tenellus_contig11755:2776..28141680789193.4118564-CDS-C-tenellus_contig11755:2776..2814Choristocarpus tenellus KU2346CDSC-tenellus_contig11755 2777..2814 +
1680789193.4254673-CDS-C-tenellus_contig11755:3045..31761680789193.4254673-CDS-C-tenellus_contig11755:3045..3176Choristocarpus tenellus KU2346CDSC-tenellus_contig11755 3046..3176 +
1680789193.4363213-CDS-C-tenellus_contig11755:3203..34061680789193.4363213-CDS-C-tenellus_contig11755:3203..3406Choristocarpus tenellus KU2346CDSC-tenellus_contig11755 3204..3406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11755.1.1

>prot_C-tenellus_contig11755.1.1 ID=prot_C-tenellus_contig11755.1.1|Name=mRNA_C-tenellus_contig11755.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=251bp
MVEDRHTPKAPSHQAIFSAASIISKYTTVSNPHITPMPSSRTGKRRGTTS
QRHEDCFPRVGRPVHAIIEENRKTELCRNWEERKECPFGENCAFAHGTQE
LKYRTPREMESAGRIPDASKYRCYPCLTWVATGSCPYATRCVFIHDPRIK
GPTDAWLYSDCHPNSAPPETSEKRPMFFFPDMELINIENGKLCVLPFRRW
KETIVSTLSYYSRSVCTHYISLIHQTLSQLLHRRPESIHPIFVFEISRQF
*
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mRNA from alignment at C-tenellus_contig11755:1455..3473+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11755.1.1 ID=mRNA_C-tenellus_contig11755.1.1|Name=mRNA_C-tenellus_contig11755.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2019bp|location=Sequence derived from alignment at C-tenellus_contig11755:1455..3473+ (Choristocarpus tenellus KU2346)
GGGAGAAATACATAGTGCTGTATTATTAGGTCTCTAGAATGTAAGTGGTT
TCGTTCTGTCCAAGCTCAGGACTCCAGTCCAACTCCATCTACTACTTTTG
TCAGCACCCAATAAGAGTCAGTAATATTGGAGTCAGCAAAGTCTCCACCC
GCTCTCAATATGGAAACATGGTTGAAGATCGACACACTCCGAAGGCGCCT
AGTCATCAAGCCATTTTCTCCGCCGCATCGATCATCTCCAAATATACTAC
CGTCTCCAATCCCCACATCACACCAATGCCCTCGAGTCGTACAGGAAAGC
GCCGTGGGACCACCAGCCAAAGGCATGAGGACTGTTTCCCACGTGTTGGT
CGACCAGTTCATGCCATCATCGAGGAAAACCGTAAGGTACCAATCTTTGC
CAACCACTACATTTTTGTGTAAGACCATATCCAAGTTCCTTTCAAGTAGG
GCCCTACACAACAGTTCAGGAGCCAAGATCACCCTCACGTATTTCTTACA
CATTGCTTTGGAGAATCACATCCTATATATGGCTATCGTCATTTCCTCGT
TCCCTTTTCTCCCTTGTCTCTGGTCCATGATATTGATGGACCGTGAAACA
TGTGTTCCAGACCGAGCTTTGCCGCAACTGGGAAGAACGGAAGGAGTGCC
CCTTCGGTGGTGAGTGGCGTATGCAGATCGACCGTTCGTGACTCAGGAGA
GAAATTTACATATACCAGGCATGATCCCTTCATTTTTCCGTATACTTTTT
GTCCTTACAAGGCTTGGTTCTTCTCGGTCCCTAACTTCACTACCTTGTCC
TCCCCAGAAAACTGTGCTTTTGCTCACGGGACACAGGAGCTCAAGTACCG
CACACCACGTGAAATGTGAGTGATGAGCAGCGTTGTGTGGTGTTTTCGGG
GCAGACTATGGTCATGTTTAATTGTGCTTGCAAATATGATGGAGACACAG
TGAGCCATTCCGTTTATTAGTGTTTGGCGTGGTCGACCCATTGACACATA
TCCCCAATCTTAACGTAAATTCTCCTTTGGAACTCTTGCATATCATTTCT
TGTACTCGCCTATGTTCGTTGCCGGACAGGGAGAGTGCGGGTCGTATTCC
TGATGCCTCCAAGTACCGCTGTTATCCATGCCTGGTGAGTTTTTCATAAC
AATCCAAAACTAGAGTCAGTGTACTGCAGGAGATATCTGGTTAGATTCTG
GTTAAAGCTTGAAGTTTGCTATGCGTCCTTTTTGCAAGATAGCGTTTTAC
ATGAGCAGGCTACTCCATGTAAAACGACTGAACCCCTGAACTTCATGCAT
CCTTTCTTGTTGAATTTGTCAGACTTGGGTCGCCACGGGGAGCTGTCCAT
ACGCCACAAGGTGAGCTATTAATCATTTTAGTGTCCTCAAATGAAAATAA
CTAAGTACTACTACTGTCTATTTTTGTGAAGTAAAATGTCGCAATGCAGG
TGGCTTGGTACCAGTTCAGGGATAGACCACCAATATGGGGAATGTGGATC
ATGTTTGATTTCATCAGTTATTCGACCTCTCGTGTACACAGTACAATCCT
TTGGCCTAATCTCCATCCAATCTTCCATAACCCCACCGCAGATGTGTCTT
CATCCACGACCCACGAATTAAGGGTCCAACCGATGCCTGGTTGTACTCTG
ACTGCCATCCAAACAGTGCGCCTCCCGAAACATCTGAGAAGAGACCAATG
TTTTTCTTTCCGGACATGGAGTGTGATCCAGATAGTACAAAGGTATGAGT
AATCAATATTGAAAATGGCAAATTGTGCGTTCTGCCATTTAGGCGATGGA
AAGAAACTATAGTGTCAACACTCTCTTACTATAGCAGATCTGTATGCACG
CACTACATCTCTCTCATACATCAGACCCTATCACAACTACTGCACCGTCG
ACCTGAATCTATACACCCAATCTTTGTATTCGAGATCTCTAGACAGTTCT
GACCTTCCTCATTACACTAGCCCGACATTTTACATAGATACTTCGTCTGG
TTCAAAGACCTCTCCCAGT
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Coding sequence (CDS) from alignment at C-tenellus_contig11755:1455..3473+

>mRNA_C-tenellus_contig11755.1.1 ID=mRNA_C-tenellus_contig11755.1.1|Name=mRNA_C-tenellus_contig11755.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=753bp|location=Sequence derived from alignment at C-tenellus_contig11755:1455..3473+ (Choristocarpus tenellus KU2346)
ATGGTTGAAGATCGACACACTCCGAAGGCGCCTAGTCATCAAGCCATTTT
CTCCGCCGCATCGATCATCTCCAAATATACTACCGTCTCCAATCCCCACA
TCACACCAATGCCCTCGAGTCGTACAGGAAAGCGCCGTGGGACCACCAGC
CAAAGGCATGAGGACTGTTTCCCACGTGTTGGTCGACCAGTTCATGCCAT
CATCGAGGAAAACCGTAAGACCGAGCTTTGCCGCAACTGGGAAGAACGGA
AGGAGTGCCCCTTCGGTGAAAACTGTGCTTTTGCTCACGGGACACAGGAG
CTCAAGTACCGCACACCACGTGAAATGGAGAGTGCGGGTCGTATTCCTGA
TGCCTCCAAGTACCGCTGTTATCCATGCCTGACTTGGGTCGCCACGGGGA
GCTGTCCATACGCCACAAGATGTGTCTTCATCCACGACCCACGAATTAAG
GGTCCAACCGATGCCTGGTTGTACTCTGACTGCCATCCAAACAGTGCGCC
TCCCGAAACATCTGAGAAGAGACCAATGTTTTTCTTTCCGGACATGGAGT
TAATCAATATTGAAAATGGCAAATTGTGCGTTCTGCCATTTAGGCGATGG
AAAGAAACTATAGTGTCAACACTCTCTTACTATAGCAGATCTGTATGCAC
GCACTACATCTCTCTCATACATCAGACCCTATCACAACTACTGCACCGTC
GACCTGAATCTATACACCCAATCTTTGTATTCGAGATCTCTAGACAGTTC
TGA
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