mRNA_C-tenellus_contig11752.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11752.2.1
Unique NamemRNA_C-tenellus_contig11752.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11752.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11752contigC-tenellus_contig11752:1487..2217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size731
Hectar predicted targeting categoryother localisation
Exons1
Cds size702
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789193.1351194-CDS-C-tenellus_contig11752:1486..21881680789193.1351194-CDS-C-tenellus_contig11752:1486..2188Choristocarpus tenellus KU2346CDSC-tenellus_contig11752 1487..2188 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789193.1772468-UTR-C-tenellus_contig11752:2188..22171680789193.1772468-UTR-C-tenellus_contig11752:2188..2217Choristocarpus tenellus KU2346UTRC-tenellus_contig11752 2189..2217 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11752.2.1prot_C-tenellus_contig11752.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11752 1487..2188 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11752.2.1

>prot_C-tenellus_contig11752.2.1 ID=prot_C-tenellus_contig11752.2.1|Name=mRNA_C-tenellus_contig11752.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=234bp
MPSPNPTEGGRSGIHSEGSLATLTLEHDSTGNRDRSGSIVLSSSKKDDEE
NMGEVPDAESETMPGGDDSGRCTTIDTVGTSGDKSVYLDSTDKREMDDEI
GERSGISIHTESMGSMVMGKSFGSSLKDRPSVKKAKLGKTLTLVNKNKRS
PTAVGRVIPVEKPREKDGHEGQPTLFTYIFASASTSREMETASTDKRMGL
GDAVQDEDGDRSACGDGPAPCARPQSVHSGGPTM
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mRNA from alignment at C-tenellus_contig11752:1487..2217-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11752.2.1 ID=mRNA_C-tenellus_contig11752.2.1|Name=mRNA_C-tenellus_contig11752.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=731bp|location=Sequence derived from alignment at C-tenellus_contig11752:1487..2217- (Choristocarpus tenellus KU2346)
ACCCCGATGGTGATGAAGAGGAACAGGAGATGCCATCGCCCAACCCAACA
GAAGGTGGGAGGAGCGGGATACACTCTGAGGGCAGCTTGGCAACCCTAAC
CTTGGAACACGACTCCACTGGCAATAGAGACCGGTCTGGTTCTATTGTTT
TGTCATCTTCCAAGAAGGATGACGAGGAAAACATGGGGGAGGTGCCAGAC
GCAGAATCAGAGACCATGCCGGGGGGGGATGATTCTGGAAGGTGTACAAC
CATCGATACAGTGGGTACCAGCGGGGACAAGTCCGTGTATCTTGACTCAA
CGGATAAAAGGGAGATGGATGACGAGATTGGGGAGAGAAGTGGGATCTCC
ATCCATACTGAGTCAATGGGATCTATGGTCATGGGGAAATCATTCGGTTC
TTCTCTGAAAGACAGGCCTTCGGTGAAGAAGGCAAAACTTGGCAAGACTC
TAACTTTAGTCAATAAGAATAAGAGGTCGCCAACAGCTGTTGGACGGGTC
ATACCAGTGGAGAAGCCTCGTGAAAAGGATGGGCATGAAGGACAACCAAC
CCTTTTCACTTACATCTTCGCTTCTGCCAGTACGAGCAGAGAGATGGAAA
CAGCTTCAACAGACAAAAGAATGGGTTTAGGTGACGCGGTCCAGGATGAA
GACGGGGACCGTTCCGCATGTGGTGATGGCCCTGCGCCCTGCGCCAGACC
GCAATCAGTCCACTCCGGCGGTCCAACCATG
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Coding sequence (CDS) from alignment at C-tenellus_contig11752:1487..2217-

>mRNA_C-tenellus_contig11752.2.1 ID=mRNA_C-tenellus_contig11752.2.1|Name=mRNA_C-tenellus_contig11752.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=702bp|location=Sequence derived from alignment at C-tenellus_contig11752:1487..2217- (Choristocarpus tenellus KU2346)
ATGCCATCGCCCAACCCAACAGAAGGTGGGAGGAGCGGGATACACTCTGA
GGGCAGCTTGGCAACCCTAACCTTGGAACACGACTCCACTGGCAATAGAG
ACCGGTCTGGTTCTATTGTTTTGTCATCTTCCAAGAAGGATGACGAGGAA
AACATGGGGGAGGTGCCAGACGCAGAATCAGAGACCATGCCGGGGGGGGA
TGATTCTGGAAGGTGTACAACCATCGATACAGTGGGTACCAGCGGGGACA
AGTCCGTGTATCTTGACTCAACGGATAAAAGGGAGATGGATGACGAGATT
GGGGAGAGAAGTGGGATCTCCATCCATACTGAGTCAATGGGATCTATGGT
CATGGGGAAATCATTCGGTTCTTCTCTGAAAGACAGGCCTTCGGTGAAGA
AGGCAAAACTTGGCAAGACTCTAACTTTAGTCAATAAGAATAAGAGGTCG
CCAACAGCTGTTGGACGGGTCATACCAGTGGAGAAGCCTCGTGAAAAGGA
TGGGCATGAAGGACAACCAACCCTTTTCACTTACATCTTCGCTTCTGCCA
GTACGAGCAGAGAGATGGAAACAGCTTCAACAGACAAAAGAATGGGTTTA
GGTGACGCGGTCCAGGATGAAGACGGGGACCGTTCCGCATGTGGTGATGG
CCCTGCGCCCTGCGCCAGACCGCAATCAGTCCACTCCGGCGGTCCAACCA
TG
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