mRNA_C-tenellus_contig1175.6.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1175.6.1
Unique NamemRNA_C-tenellus_contig1175.6.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1175.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1175contigC-tenellus_contig1175:12843..13231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size389
Hectar predicted targeting categorysignal peptide
Exons1
Cds size168
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789193.038521-UTR-C-tenellus_contig1175:12842..130201680789193.038521-UTR-C-tenellus_contig1175:12842..13020Choristocarpus tenellus KU2346UTRC-tenellus_contig1175 12843..13020 -
1680789193.0712311-UTR-C-tenellus_contig1175:13188..132311680789193.0712311-UTR-C-tenellus_contig1175:13188..13231Choristocarpus tenellus KU2346UTRC-tenellus_contig1175 13189..13231 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789193.0568192-CDS-C-tenellus_contig1175:13020..131881680789193.0568192-CDS-C-tenellus_contig1175:13020..13188Choristocarpus tenellus KU2346CDSC-tenellus_contig1175 13021..13188 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1175.6.1prot_C-tenellus_contig1175.6.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1175 13021..13188 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1175.6.1

>prot_C-tenellus_contig1175.6.1 ID=prot_C-tenellus_contig1175.6.1|Name=mRNA_C-tenellus_contig1175.6.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=56bp
MRLVLFGSLPTFPLCSTIVHFPLNSKIIFPINGFTIVEQRILKLFFIELI
VTFIL*
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mRNA from alignment at C-tenellus_contig1175:12843..13231-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1175.6.1 ID=mRNA_C-tenellus_contig1175.6.1|Name=mRNA_C-tenellus_contig1175.6.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=389bp|location=Sequence derived from alignment at C-tenellus_contig1175:12843..13231- (Choristocarpus tenellus KU2346)
ACTGAGTTTATTATCACAGTTTGTTATATAGGAAAAATAAAATATGCGCC
TGGTACTTTTTGGATCTCTTCCTACTTTTCCATTGTGTTCCACAATAGTG
CATTTCCCTTTGAATAGCAAAATTATTTTTCCAATCAATGGATTTACTAT
TGTGGAACAGAGAATTCTTAAGTTATTTTTTATAGAGTTAATAGTGACAT
TTATATTATAAATAAATATAAATAACATACTTTACAGCAATGTATATCCA
AAATTTGCCAGAGGAAGATCCAAAAGAAGTGGCTATTGAGGAAGTTGTTG
GTCATGTGCTAGTTATTGTCCTCTGTGCATTACCTGTGGCTTTTGCATCC
CTAACAACTTTACTCAAACATTTTGGTGCTCTTTCTCTA
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Coding sequence (CDS) from alignment at C-tenellus_contig1175:12843..13231-

>mRNA_C-tenellus_contig1175.6.1 ID=mRNA_C-tenellus_contig1175.6.1|Name=mRNA_C-tenellus_contig1175.6.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=168bp|location=Sequence derived from alignment at C-tenellus_contig1175:12843..13231- (Choristocarpus tenellus KU2346)
ATGCGCCTGGTACTTTTTGGATCTCTTCCTACTTTTCCATTGTGTTCCAC
AATAGTGCATTTCCCTTTGAATAGCAAAATTATTTTTCCAATCAATGGAT
TTACTATTGTGGAACAGAGAATTCTTAAGTTATTTTTTATAGAGTTAATA
GTGACATTTATATTATAA
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